BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477073
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79040.1 | Symbols: PSBR | photosystem II subunit R | chr1:2... 948 0.0
> AT1G79040.1 | Symbols: PSBR | photosystem II subunit R | chr1:29736016-29737009
FORWARD LENGTH=720
Length=720
Score = 948 bits (513), Expect = 0.0
Identities = 592/629 (94%), Gaps = 10/629 (2%)
Strand=Plus/Plus
Query 3 GAGAATAATAGTTTGATCATCTTGTGAG-AAAATAATGGCTGCTTCAGTGATGCTTTCAT 61
||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 35 GAGAAGAATAGTTTGATCATCTTGTGAGAAAAATAATGGCTGCTTCAGTGATGCTATCTT 94
Query 62 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCCAGAGGATTACCGT 121
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 95 CGGTGACATTGAAACCAGCTGGTTTCACGGTGGAGAAGACGGCGGCTAGAGGATTACCGT 154
Query 122 CGCTAACAAGAGCTCGTCCCTCCTTCAAAATCGTCGCCAGTGGCGGCAAGAAGATCAAGA 181
|||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 155 CGCTCACAAGAGCTCGTCCCTCCTTCAAAATTGTCGCCAGTGGCGTCAAGAAGATCAAGA 214
Query 182 CCGACAAGCCCTAT-GGAATCAACGGTAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 240
|||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 215 CCGACAAGCCCT-TCGGAATTAACGGCAGCATGGACTTGAGGGACGGCGTCGACGCCTCC 273
Query 241 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAATACGTCGACAAGTATGGAGCTAACGTC 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 274 GGCAGAAAGGGCAAGGGATACGGTGTTTACAAGTACGTCGACAAGTATGGAGCTAACGTC 333
Query 301 GATGGATACAGTCCTATTTACAACGAGAACGATTGGTCAGCGAGTGGTGACGTGTACAAG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 334 GATGGATACAGTCCTATTTACAACGAGAACGAGTGGTCAGCGAGTGGTGACGTGTACAAG 393
Query 361 GGAGGAGCCACCGGATTGGCTATTTGGGCGGTTACTCTCGCCGGTATTCTCGCCGGAGGA 420
||||||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 394 GGAGGAGTCACCGGATTGGCAATTTGGGCGGTAACTCTCGCCGGAATTCTTGCCGGAGGT 453
Query 421 GCTCTTCTTGTGTACAACACCAGTGCGTTGGCTCAGTAAATCTTTAAGTTGTTAGCGCAT 480
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 454 GCTCTTCTTGTGTACAACACAAGTGCTTTGGCTCAGTAAATCTTAAAGTTGTTAGCGCAT 513
Query 481 GTGTAATCATGTTTCTATAAATGTGTCGTCTGTGTTGTTGTTCTCTTTCTCTCTAATGTT 540
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 514 GTGTAATCATGTTTCTATAAATGT-T--TCTGTGTTGTT---CTCTTTCTCTCTAATGTT 567
Query 541 TTAAAACTCAGAAATACTTTCAAATTTATAAGACTTCTAGTGTTTGTATATATATTCATC 600
||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 568 GTAAAACTCAGACATACTTTGAA-TTTATAAGACTTCTAGTGTTTGTATATATATTCATC 626
Query 601 TTCCTCTTCTTTGTGATTTCGATGCACAA 629
||||| | |||| ||||||| ||||||||
Sbjct 627 TTCCTATCCTTTATGATTTCCATGCACAA 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5