BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477076
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1557 0.0
AT3G12970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 60.2 6e-08
> AT1G79060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G56020.1);
Has 3399 Blast hits to 980 proteins in 195 species: Archae
- 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154;
Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink).
| chr1:29741748-29743600 FORWARD LENGTH=1853
Length=1853
Score = 1557 bits (843), Expect = 0.0
Identities = 1066/1170 (91%), Gaps = 30/1170 (3%)
Strand=Plus/Plus
Query 39 CTCTCTCTTTTGGATCTGGCCGTTGATTTTTTCGGGACGGCGATAAGTAT-TTGCATGAA 97
||||||| |||||||||||||||||||||| || ||||||||||||| | |||||||||
Sbjct 58 CTCTCTCGTTTGGATCTGGCCGTTGATTTTCTCCCGACGGCGATAAGTTTGTTGCATGAA 117
Query 98 CGCCGGAGATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGAGTTTCCTACTT 157
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 118 CGCCGGTGATGGCTTCTGTTTGCGTCAACAATGTTACTGTTTCTCAGGATTTTCCTACTT 177
Query 158 ACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGAGGATGGTGGTCGGACTTCTGGAT 217
||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 178 ACGGATGTTTCAATCCACGAGCTTCTTTCAGCCGTGACGACGGTGGTCGGAGTTCTGGAT 237
Query 218 CCGCCGCATCAGAGATTCAGAAGAAGGAAACCGTAGTCGGAGCTGGTGATTTCGAGTTTA 277
||| |||||| ||||||| |||| ||||||| | ||||||||||||||||||||||||||
Sbjct 238 CCGTCGCATCGGAGATTCCGAAGGAGGAAACAGCAGTCGGAGCTGGTGATTTCGAGTTTA 297
Query 278 GGTTGGAGGAGGATCCAGTCGGAATGCTCCCAGCCGACGAGCTTTTCTCCGACGG-AAAG 336
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 298 GGTTAGAGGAGGATCCAGTCGGAATGCTCCCAGCCGATGAGCTTTTCTCCGACGGTAAA- 356
Query 337 CTCGTGACGAAGCAG---CAACAACGGACGGTGGAGACCGGCGGGAAATGCAGGAGGATG 393
||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 357 CTCGTGACGAAGCAGCAACAACAACAGACGACGGAGATCGGCGGGAAATGCAGGAGGATG 416
Query 394 GAAGTGGTGGAGATGGAGATCGCCGGTGGTGGCGATATTTGCTCGTTTTCTCCAAAGGCG 453
||||| |||||||| |||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 417 GAAGTCGTGGAGATTGAGATCTCCGGGGGTGGCGATAATTGCTCGTTTTCTCCAAAGGCG 476
Query 454 CCTCGGTGTTCGAGTAGATGGAGGGACTTGTTAGGGCTTAAACGATTCTCTCAGAAT--- 510
|| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 477 CCACGGTGTTCAAGTAGATGGAGGGACTTGTTAGGACTCAAACGATTCTCTCAGAATAGC 536
Query 511 AGCAAAGCCGCGTCGA---CGACGA-TTC--CTTCGAATCCGAGATCGTCTACTTCGTCG 564
|||||| ||||||||| |||||| | | |||||||||||||||| |||||||||
Sbjct 537 AGCAAATCCGCGTCGACTGCGACGACGACGACGACGAATCCGAGATCGTCAACTTCGTCG 596
Query 565 TTGAAACAATTCTTGCATCGTAGCTCCAGATCCTCGTCGTCCTCTTCAGATGCTTCGTTG 624
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 597 TTGAAACAGTTCTTGCATCGGAGCTCCAGGTCCTCGTCGTCCTCTTCAGATGCTTCGTTA 656
Query 625 CTCATGAGTCTTCCTCTCCTCAAGGATTCCGATTGCGAAtctgtctctatatcctcttct 684
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 657 CTCATGAGTCTTCCTCTCCTCAAAGATTCCGATTCCGAATCTGTCTCTATATCCTCTTCT 716
Query 685 cgtatgtctctctcctcttcctcctccGGCCACGACCACGAAGATATCCCAAGACTCTCT 744
|||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct 717 CGTATGTCTCTCTCCTCTTCCTCCTCTGGCCATGACCACGAAGATCTTCCAAGACTCTCT 776
Query 745 CTCGATGCAGAGAGACCTAACCATAACCA--T-A--A-CCTCAACCACAATCTCACTGCG 798
||||||||||||||||||||||| ||||| | | | ||||||||||||||||||||||
Sbjct 777 CTCGATGCAGAGAGACCTAACCAAAACCACATCATTAACCTCAACCACAATCTCACTGCG 836
Query 799 AATCCATTTGCTCCCGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAAC 858
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AATCCATTTGCTCCGGCTCGTAGCCTAAACCCAAATCCACCGAGAATGAGGTTAGTGAAC 896
Query 859 CATTCATCAGCAGGAACCGGTGGTGGGAGAGTTGGACGAAGCCCGATGCGACGTTCCGGT 918
|||||| || |||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 897 CATTCAACATCAGGAACCGGAGGAGGAAGAGTTGGACGCAGTCCGATGCGACGTTCCGGT 956
Query 919 GGAGAAACATCTCAAACGTCAGCGATTGCGAGCAGAGGAGTCTCTGTAGACAGTCCAAGA 978
||||||||||| | | | | || | | ||||||||||||||||||||||||||||
Sbjct 957 GGAGAAACATC--AGCCAT-A---AT-GA-A-CAGAGGAGTCTCTGTAGACAGTCCAAGA 1007
Query 979 CTAAACTCTTCAGGTAAAATCGTGTTTCAGAGCCTTGAACGAAGCTCAAGCAGTCCGAGT 1038
|||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 1008 CTAAACTCTTCAGGTAAAATCGTGTTCCAGAATCTAGAACGAAGCTCAAGCAGTCCGAGT 1067
Query 1039 AGCTTCAATGGTGGAACAAGCGGGTATAGACACAGGGGAATGGAGAGATCGTATAGCTCA 1098
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1068 AGCTTCAATGGTGGAACAAGCGGGTATAGACACAGAGGAATGGAGAGATCGTATAGCTCA 1127
Query 1099 AACGTTAGGGTAACTCCAGTACTAAACGTTCCCGTTTGTTCAATTAGAGGTGGTTCAGTA 1158
||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||
Sbjct 1128 AACGTTAGGGTTACTCCAGTTTTGAACGTTCCCGTTTGCTCAATCAGAGGTGGTTCAGTA 1187
Query 1159 GTATTTGGCCAGTTCTTCTCTTCCTCGTca 1188
|| ||||| ||||| |||||||||||||||
Sbjct 1188 GTCTTTGGTCAGTTTTTCTCTTCCTCGTCA 1217
Score = 433 bits (234), Expect = 3e-120
Identities = 500/614 (81%), Gaps = 76/614 (12%)
Strand=Plus/Plus
Query 1188 aacaacaacaacaacaGATCGTCGTCTCATATCAGTAGAGGCCGTAACTCCACGGATCGA 1247
||||||||||| || ||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1251 AACAACAACAATAATAGAGCGTCGTGTCACATCAGTAGAGGCCGTAACTCCACGGATCGA 1310
Query 1248 ATCTAA-CC--C-------AAT---GGTA--A-CAA---CAAC-ACAA-TCT-TGTTGAT 1285
|||||| || | ||| || | | ||| ||| |||| || | |||||
Sbjct 1311 ATCTAACCCGACTATTATAAATGAAGGAACCATCAATGGTAACAACAACACTGTATTGAT 1370
Query 1286 TCAACAGTAGCTAGCTAG----CTAGTGGTAATCATTCTGtttttt--tttattt----t 1335
|||||||||||||||||| ||||| |||||||||||||||||| ||| |||
Sbjct 1371 TCAACAGTAGCTAGCTAGTACTCTAGTAGTAATCATTCTGTTTTTTGGTTTGTTTACAAC 1430
Query 1336 tGGT-TTGTTTACAACAAATC-TTATTTGTA-ACA-G-AGTTAGAAATT-TCCTTGGACT 1389
| || ||| |||| | | || ||| || | | | | |||| |||| |||| || |
Sbjct 1431 AAATCTTATTTTTAACAGAGCTTTTTTTTTATA-AGGTA-TTAG-AATTGTCCTGGGTGT 1487
Query 1390 GTAAATAAAGAATCTGCCA-CGGTGAAGTGTAATTCTAGAGTTCATTGAC----ATAGAG 1444
||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1488 GTAAATAAAGAATCTGCCATTGGTGAAGTGTAATTCTAGGGTTCATTGACATAGATAGAG 1547
Query 1445 ACAC-AAATGTGG-AATCGGAAACTCCT-AATTGTGtttttttGGCTTGTGCTTGGGTTg 1501
|||| |||| ||| ||| ||| |||||| |||||||| ||||| ||||||||||||||||
Sbjct 1548 ACACAAAAT-TGGAAAT-GGAGACTCCTAAATTGTGTGTTTTT-GCTTGTGCTTGGGTTG 1604
Query 1502 agagag--ac--agagagagTGAGGTAGACGCGCTATAGGGAAT-CGCGTGGGTCATAAA 1556
|||||| || |||||||||||||||||||||||| |||| || ||||||||||| ||
Sbjct 1605 AGAGAGACACATAGAGAGAGTGAGGTAGACGCGCTAAAGGG-ATGCGCGTGGGTCAGAAC 1663
Query 1557 ATAGGAAACAGATTCtttttttttCTATATCATATGCTCTTCTTCTGTGTGTGTATTTGC 1616
||||||||||||||| |||| ||| |||||||||||||||||| || ||||||||||
Sbjct 1664 ATAGGAAACAGATTC--TTTTGCTCTCTATCATATGCTCTTCTTC--TGCGTGTATTTGC 1719
Query 1617 GCTCTCCCCACGTTGAAGCTTATCTAAGCTGTCTCTTTCATGTGAtttt-tttt-A-T-T 1672
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |
Sbjct 1720 GCTCTCCCCACGTTGAAGCTTATCTAAGCTGTCTCTTTCATGTGATTTTATTTTTAATGT 1779
Query 1673 AT------AT-AG-T--TTTATTTTGTCGTTTTCTGTGTTTCGGAAATGATGCAGTTTTC 1722
|| || | | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1780 ATCTTTTTATTATATAGTTTATTTTGTCGTTTTCTGTGTTTCGGAAATGATGCAGTCTTC 1839
Query 1723 AGAGACTTTACCAC 1736
||||||||||||||
Sbjct 1840 AGAGACTTTACCAC 1853
> AT3G12970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G56020.1);
Has 2408 Blast hits to 418 proteins in 91 species: Archae
- 0; Bacteria - 41; Metazoa - 198; Fungi - 63; Plants - 125;
Viruses - 13; Other Eukaryotes - 1968 (source: NCBI BLink).
| chr3:4141051-4142548 REVERSE LENGTH=1498
Length=1498
Score = 60.2 bits (32), Expect = 6e-08
Identities = 45/51 (88%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 289 GATCCAGTCGGAATGCT-CCCAGCCGACGAGCTTTTCTCCGACGGAAAGCT 338
||||| ||| |||||| || |||||||||||||||||||||||||||||
Sbjct 222 GATCCCGTCACAATGCTATCC-GCCGACGAGCTTTTCTCCGACGGAAAGCT 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85842931950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5