BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477082
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79110.1 | Symbols: | zinc ion binding | chr1:29759158-2976... 1419 0.0
> AT1G79110.1 | Symbols: | zinc ion binding | chr1:29759158-29760691
FORWARD LENGTH=1369
Length=1369
Score = 1419 bits (768), Expect = 0.0
Identities = 1096/1240 (88%), Gaps = 79/1240 (6%)
Strand=Plus/Plus
Query 1 CTTCACGCACATCAAAGCACCAAAAACAAAAACCGAAACGCATGCATTTCTAATTTTCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTTCACGCACATCAAAGCACCAAAAACAAAAACCGAAACGCATGCATTTCTAATTTTCTA 121
Query 61 TCTTCTTTTTAACTTCCTTCTTCT-CCACCAtttttttCATCATCATCAACTTCTTCTCT 119
||||||||||||||||| |||||| |||||| ||| ||||||| ||||||||||
Sbjct 122 TCTTCTTTTTAACTTCC-TCTTCTCCCACCA----TTT--TCATCAT---CTTCTTCTCT 171
Query 120 AGAAGACTAGAcctctctctccttcaatggccgtcgatgctcaccatctccttctctctc 179
||| | | |||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 172 ------CTA-A--AC-CTCTCCTTCAATGGCCGTCGATGCTCACCATCTCTTTCTTTCTC 221
Query 180 ctcctcaactcttctccAACAGAGAATTAACGTTGAATAA-CACAACTATGGAACCAACT 238
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 222 CTCCTCAACTCTTCTCCAACAGAGAATTAACGATGAATAATAAC-ACTATGGAACCAACT 280
Query 239 AGTGGCGGTTTCTGCAATAACAATC-AA------AC--CGTCGTTTCACCTTTCTCCGTT 289
||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 281 AGTGGCGGTTTCTGCAATAACAATCAAACCGGTTACGGCGTCGTTTCACCTTTCTCCGTT 340
Query 290 CCTAACGAT--a-caacaacaacaacaacaacGCCTCCTCTTCTTCACATGTACGGCGGC 346
|| ||| || | |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 341 CCAAACCATACATCAACAACAACAACAGCAACGCCTCCTCTTCTTCATGTGTACGGCGGC 400
Query 347 GCTGATACTATTACGACCACCGCCGATTACTACGCCGATGGTTCTGCTAATCTCGACTGT 406
||||||||||| | |||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 401 TCTGATACTATTCCCACCACCGCCGGTTACTACGCCGATGGTGCTACTAATCTCGACTGT 460
Query 407 GAtttttttCCTATACCGACGAGAAAACGCTCCAGAGATTCTTCTAGCAGATCAAACTAT 466
|| ||||| ||| |||| |||||||||||||| ||||||||||| | ||||| || |
Sbjct 461 GAATTTTTCCCTTTACCAACGAGAAAACGCTCAAGAGATTCTTC-A--AGATC-AA--A- 513
Query 467 TatcatcatcatcttcttcttcagagccctagatcatcatcatcatcatcatG-TGTTA- 524
| | ||||||||||||||||||||| ||| ||||||||||||| | | | | || ||
Sbjct 514 T-T-ATCATCATCTTCTTCTTCAGAACCCGAGATCATCATCAT-GTGTTAACGCTGCTAC 570
Query 525 -AC-GCTGCTACTACTACTCCGTTCTCGTTTCTTGGTCAAGACATTGATATCTCCTCTCA 582
|| | |||| || |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 571 TACAACAACTACAACAACTCTGTTCTCGTTTCTTGGCCAAGACATTGATATCTCCTCTCA 630
Query 583 CATGAATCATCAACAACACGAAATCGATCGATTCGTCTCCCTT--C----AT---ATGGA 633
||||||||| |||||||||||||| |||||||||||||||||| | || |||||
Sbjct 631 CATGAATCAACAACAACACGAAATAGATCGATTCGTCTCCCTTCACTTATATCAGATGGA 690
Query 634 GAGGGTGAAATATGAGATAGAAGAGAAGAGGAAGAGGCAAGCGAGGACGATAATGGAGGC 693
||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 691 GAGAGTGAAATATGAGATAGAAGAGAAGAGGAAAAGACAAGCGAGAACGATAATGGAGGC 750
Query 694 TATAGAGCAAGGACTGGCTAAAAGGCTTCGAGTCAAAGAGGAAGAAAGAGAGAGAATCGG 753
|||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||
Sbjct 751 GATAGAGCAAGGACTGGTTAAAAGGCTTCGTGTCAAAGAAGAAGAAAGAGAGAGGATCGG 810
Query 754 CAAGATTAACCACGCGCTTGAGGAGCGAGTGAAGTCACTCTCCATGGAGAACCAAATATG 813
|||| |||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct 811 CAAGGTTAACCACGCGCTTGAGGAGCGAGTGAAGTCACTTTCTATAGAGAACCAAATCTG 870
Query 814 GAGAGACCTTGCTCAGACCAACGAAGCCACCGCTAACCACCTCCGAACCAACCTCGACCA 873
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 871 GAGAGACCTTGCTCAGACGAACGAAGCCACGGCTAACCACCTCCGAACCAACCTCGAGCA 930
Query 874 GGTTCTGGCGCAGGTTAAGGAC--AT-ACGCGGCGCAGGATTAGAGAATAACATGAACGA 930
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 931 TGTTCTGGCGCAGGTTAAGGACGTATCACGCGGCGCAGGATTAGAGAAAAACATGAACGA 990
Query 931 AGCGGACGATGCGGAGTCGTGCTGTGGAAGCAG-T-TG-TGGTG------AAGACACGGT 981
|| ||||||||||||||||||||| |||||||| | || ||||| |||| |||||
Sbjct 991 AGAGGACGATGCGGAGTCGTGCTGCGGAAGCAGCTGTGGTGGTGGTGGTGAAGAAACGGT 1050
Query 982 TAGGCGCACCGTAGG-T-AC---gg-aggcgcaggataaggcggagaggaggaggagga- 1034
||||||| ||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 1051 AAGGCGCAGGGTAGGATTAGAAAGGGAGGCGCAGGATAAGGCGGAGAGGAGGAGGAGGAG 1110
Query 1035 --tgtgtagaaactgtggggaggaggaATCGTGTGTGTTGCTGTTACCGTGCAGACACTT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATGTGTAGAAACTGTGGGGAGGAGGAATCGTGTGTGTTGCTGTTACCGTGCAGACACTT 1170
Query 1093 GTGCTTGTGTGGAGTCTGCGGGTCCAGTGTGCACACGTGTCCCATCTGTACATCTCCTAA 1152
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GTGCTTGTGTGGAGTATGCGGGTCCAGTGTGCACACGTGTCCCATCTGTACATCTCCTAA 1230
Query 1153 AAACGCTAGCGTTCATGTCAACATGTCATCTTGACCCCGT 1192
||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 AAACGCTAGCGTTCATGTCAACATGTCATCTTGACCCCGT 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5