BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477083
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1882 0.0
> AT1G79120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:29764089-29768789 REVERSE LENGTH=2199
Length=2199
Score = 1882 bits (1019), Expect = 0.0
Identities = 1103/1145 (96%), Gaps = 0/1145 (0%)
Strand=Plus/Plus
Query 1 AGTAGATCGCAATGGACGGTTGTTCAGGTGCGACACAAGTCTGGTGGAGGAGGATGGAGA 60
||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 343 AGTAGATTGCAATGGACGTTTGTTCAGGTGAGACACAAGTCTGGTGGAGGAGGATGGAGA 402
Query 61 CCCAAGCAGAAAGTATATCACAGAGTTCATGAGCTTGATAAAGCAATAGACTTGAACAAG 120
|| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 403 CCTAAGCAGAAAGTATATCATAGAGTTCATGACCTTGATAAAGCAATTGACTTGAACAAG 462
Query 121 AAACCAGCTCTGATACTTCAGTTGAAATCTATTATTCAGGCGCAGAAACATGGAAGCCTT 180
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 463 AAACCATCTCTGATACTTCAGTTGAAATCTATTATCCAGGCGCAGAAACATGGAAGCCTT 522
Query 181 CTTCTTAGGGATCTTGAGAAGCATGTTGGGTTTGTTCACAAGTGGAACTTAATGGCTGCC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CTTCTTAGAGATCTTGAGAAGCATGTTGGGTTTGTTCACAAGTGGAACTTAATGGCTGCC 582
Query 241 ATTGAGAAATACCCTTCGATATTTTATGTTGGAGGTGGAAACAAGGAACCTCCTTTTGTT 300
|||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 583 ATTGAGAAGTACCCTACGATATTTTATGTTGGAGGTGGACACAAAGAACCTCCTTTCGTT 642
Query 301 ATGCTGACTGAGAAAGCTAATAAGATTGCAGCTGAGGAAGGTGAAGCTACAGAGTCAATG 360
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 643 ATGCTGACTGAGAAAGCTAAAAAGATTGCAGCTGAGGAAAGTGAAGCTACAGAGTCAATG 702
Query 361 GAACCTATTCTGGTTAATAATCTTAGGAAGTTATTGATGATGTCTGTTGATTGTCGAGTG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GAACCTATTCTGGTTAATAATCTTAGGAAGTTATTGATGATGTCTGTTGATTGTCGAGTT 762
Query 421 CCTTTGGAGAAGGTTGAGTTCATCCAATCTGCAATGGGTTTGCCTCAAGATTTTAAGAGT 480
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 763 CCTTTGGAGAAGGTTGAGTTTATTCAATCTGCAATGGGTTTGCCTCAAGATTTTAAGAGT 822
Query 481 ACATTGATCCCTAAGTACCCTGAATTTTTCTCTTTAAAGGTTATCAATGGAAAAGTTAAT 540
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 823 ACATTGATCCCTAAGTACACTGAATTTTTCTCTTTGAAGGTTATCAATGGAAAAGTTAAT 882
Query 541 CTTGTCTTAGAGAATTGGGATTCTTCTCTGGCAACCACGGCACGAGAGGATAGGTTATCC 600
||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 883 CTTGTTTTAGAGAATTGGGATTCTTCACTGGCAATCACTGCACGAGAGGATAGGTTATCC 942
Query 601 CGTGAAGGAGTCCCCGAGTCAGTTGGGGACAGAAAGAGGGTCAGGATAACAAAGGATGGC 660
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 943 CGTGAAGGATTCTCCGAGTCAGTTGGGGACAGAAAGAGGGTCAGGATCACAAAGGATGGC 1002
Query 661 AATTTCTTGGGACGAAATGCGTTTAAGGTTTCTTTTCCTCCTGGTTTTAGGCCTAACGCA 720
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1003 AATTTCTTGGGACGAAATGCGTTTAAGATTTCTTTTCCTCCTGGTTTTAGGCCTAACGCT 1062
Query 721 AGTTATTTAGAGGAATTTGAGAAGTGGCAGAAAATGGAATTTCCATCTCCTTATCTTAAT 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1063 AGTTATTTAGAGGAATTTGAGAAGTGGCAGAAAATGGAATTCCCATCTCCTTATCTTAAT 1122
Query 781 GCAAGAAGATTTGATGCTGCAGATCCTAAAGCTAGGAAACGAGTTGTAGCTGTGCTGCAT 840
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1123 GCGAGAAGATTTGATGCTGCAGATCCTAAAGCTAGGAAACGAGTTGTAGCTGTGCTTCAT 1182
Query 841 GAACTGCTCAGTTTAACAATGGAGAAGAGAGTGACATGCGCTCAGTTGGATGCATTCCAC 900
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1183 GAACTGCTCAGTTTAACAATGGAGAAAAGAGTGACATGCGCTCAATTGGATGCATTCCAC 1242
Query 901 TCTGAGTATCTGCTTCCGTCAAGGCTAATACTTTGCTTGATAAAGCATCAAGGGATCTTC 960
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1243 TCTGAGTATCTGCTTCCATCAAGACTAATACTTTGCTTGATAAAGCATCAAGGGATCTTC 1302
Query 961 TACATTACTAACAAAGGAGCAAGGGGTACGGTATTTCTCAAAGATGCTTATGCTGGTTCT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TACATTACTAACAAAGGAGCAAGGGGTACGGTATTTCTCAAAGATGCTTATGCTGGTTCT 1362
Query 1021 AATTTGATCGAGAAATGCCCATTGTTATTGTTCCATGATAGATTTGTTGCACTCTGTGGT 1080
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1363 AATTTGATTGAGAAATGCCCATTGCTATTGTTCCATGATAGATTTGTTGCACTCTGTGGT 1422
Query 1081 CGGAAAGAAGTCAATCTATCTAATGAAATGCAGTCTTCAAGTGTTTTCTCCTAATCTTAT 1140
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 CGGAAAGAAGTCAATTTATCTAATGAAATGCAGTCTTCAAGTGTTTTCTCCTAATCTTAC 1482
Query 1141 ATCAA 1145
|||||
Sbjct 1483 ATCAA 1487
Score = 424 bits (229), Expect = 2e-117
Identities = 282/306 (92%), Gaps = 10/306 (3%)
Strand=Plus/Plus
Query 1145 AGCAAATAAGATTAAGTTTTTAGGACCCTGAACCTGATAAGCATTTCACTGTATCATATC 1204
||||||||||||| ||||| |||||| |||||||| |||| ||||| |||||||||| ||
Sbjct 1535 AGCAAATAAGATTCAGTTTATAGGACTCTGAACCTTATAAACATTTAACTGTATCATTTC 1594
Query 1205 TTCTTACCGTCAGTGTCTTCTCATGTGAAGAAAAGAAACGTACTTGTTAAGATATTAAAG 1264
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1595 TTCTTACCGTCAGTGTCTTCTCGTGTGAAGAAATGAAACGTACTTGTTAAGATATTAAAG 1654
Query 1265 TTTCCACCAACAAACAGAAGTGTAAATAGTATGTGGTGATTGAGGATGCTAACTTTCTGA 1324
||| |||||||||||||||| ||||||| ||| ||||||||||||||||| ||
Sbjct 1655 TTTTCACCAACAAACAGAAGCGTAAATACTATCTGGTGATTGAGGATGCT--------GA 1706
Query 1325 AAGCCAGAACGTGTCACAGCGTCTG-ATATGGTACCCAAGGGAGATGTGACTGGCTTATT 1383
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1707 AAGCCAGAACGTGTCATAGCGTCTGGA-ATGGTACCCAAGGGAGATGTGACTGGCTTATT 1765
Query 1384 GACTAGGGAAAGGGGGTCCAGAACTCATGTGGCTTGTGAAGGCATCATGGGAAAAGAGCC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 GACTAGGGAAAGGGGGTCCAGAACTCATGTGGCTTGTGAAGGCATCATGGGAAAAGAGCC 1825
Query 1444 AAAGGG 1449
||||||
Sbjct 1826 AAAGGG 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5