BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477084

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79130.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   713    0.0  


> AT1G79130.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr1:29771278-29771887 FORWARD LENGTH=610
Length=610

 Score =  713 bits (386),  Expect = 0.0
 Identities = 515/573 (90%), Gaps = 26/573 (5%)
 Strand=Plus/Plus

Query  1    CAAAGATGAAGCCTCTGATTCGACGTCTCTCACGAATCGCAGACTCATCTTCCTGCAACC  60
            |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct  37   CAAAGATGAAGCCTCTGATTCGACGTCTGTCACGAATCGCAGACTCATCCTCCTGCAACC  96

Query  61   GAAATCGCAGCAGCAG-TATCCATCATCCGACGTCGGCG---TCCTCTTCCGTTTTCTTG  116
            ||||||||||| || | ||||||||| ||||||||  ||   |||||||| |||||||||
Sbjct  97   GAAATCGCAGCGGC-GATATCCATCACCCGACGTCAACGTACTCCTCTTCAGTTTTCTTG  155

Query  117  GTCAAGAGAGCAACCGTGGCGTCGAGTGTTCCCTCCGGCCACGTCCCCGTCAACGTCGGC  176
            |||||| |||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct  156  GTCAAGCGAGCAACCGTCGCGTCGAGTGTTCCTTCCGGTCACGTTCCCGTCAACGTAGGC  215

Query  177  GAAGAGATGGAGAGGTTCGTGGTGAGTGCAGAGCTGCTGAATCATCCTGTTTTCGTTGGA  236
            ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  GAAGATAAGGAGAGGTTCGTGGTGAGTGCAGAGCTGCTGAATCATCCTGTTTTCGTTGGA  275

Query  237  TTGCTGAATCGATCAGCTCAAGAATACGGATATGCTCAGAGAGGAGTTCTTCATATTCCT  296
            ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||
Sbjct  276  TTGCTGAATCGATCAGCTCAAGAATACGGATACACTCAGAAAGGAGTTCTTCATATTCCT  335

Query  297  TGTAACGTATTCGTGTTCGAGCAAATTGTGGAGTCTCTCCGTTCTGGAATCGCTGAT-A-  354
            |||||||||||||||||||||||  |||| ||||||||||| ||||| ||||||||| | 
Sbjct  336  TGTAACGTATTCGTGTTCGAGCAGGTTGTAGAGTCTCTCCGATCTGGCATCGCTGATGAT  395

Query  355  -CATCGGAGCTCATTGCGTCGTTATCTGGTGAAGATGTATCCACAGAGTAGAAGATGCAT  413
             |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||
Sbjct  396  ACATCGGAGCTCATTGCATCGTTATCTGGTGAAGATGTATCTACAGAGTAGATGATG-AT  454

Query  414  GATTCTGttttttttttGTTCTTCGGTCTTCTCCTTTTTTATTTGACTGATCGGAGAAAT  473
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  455  GATTCTGTTTTTTTTTTGTTCTTCGATCTTCTCCTTTTTTATTTGAGTGATCGGAGAAAT  514

Query  474  T-------AT-AT--G-A-A--AA--TTGtttttttCGATTTTATCTCCAAATTATCAAT  517
            |       || ||  | | |  ||  ||||||||| |||||||||||| |||||||||||
Sbjct  515  TCGTCTTGATGATTTGGATATGAAAATTGTTTTTT-CGATTTTATCTCAAAATTATCAAT  573

Query  518  TTAATTAATAATGTGAAATAAAATTGAAGTGAC  550
            ||||||  || ||||||||||||||||||||||
Sbjct  574  TTAATTTGTACTGTGAAATAAAATTGAAGTGAC  606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5