BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477086
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79180.1 | Symbols: ATMYB63, MYB63 | myb domain protein 63 |... 1151 0.0
AT1G16490.1 | Symbols: ATMYB58, MYB58 | myb domain protein 58 |... 174 1e-42
> AT1G79180.1 | Symbols: ATMYB63, MYB63 | myb domain protein 63
| chr1:29786495-29787802 FORWARD LENGTH=1112
Length=1112
Score = 1151 bits (623), Expect = 0.0
Identities = 831/922 (90%), Gaps = 52/922 (6%)
Strand=Plus/Plus
Query 1 gagagagagagaATGGGGAAGGGAAGAGCACCTTGTTGTGACAAGACCAAAGTGAAGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAGAGAGAGAGAATGGGGAAGGGAAGAGCACCTTGTTGTGACAAGACCAAAGTGAAGAGA 62
Query 61 GGTCCATGGAGCCCAGAAGAAGACATAAAACTCATCTCTTTCATTCAAAAGTTTGGTCAT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 63 GGTCCATGGAGCCCAGAAGAAGACATTAAACTCATCTCTTTCATTCAAAAGTTTGGTCAT 122
Query 121 GAGAACTGGAGATCTCTCCCCAAACAATCTGGGCTACTGAGGTGTGGGAAGAGCTGTCGT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 123 GAGAACTGGAGATCTCTCCCCAAACAATCTGGGCTATTGAGGTGTGGGAAGAGTTGTCGT 182
Query 181 CTAAGGTGGATTAACTACCTTAGGCCAGATCTGAAGCGTGGCAACTTCACTTTAGAGGAG 240
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 183 CTAAGGTGGATTAACTATCTTAGGCCAGATCTGAAGCGTGGCAACTTCACTTCAGAGGAG 242
Query 241 GAAGAAACAATCATTAAGCTTCACCACAACTATGGGAACAAGTGGTCGAAAATCGCTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAAGAAACAATCATTAAGCTTCACCACAACTATGGGAACAAGTGGTCGAAAATCGCTTCT 302
Query 301 CAACTTCCAGG-ACGAACAGATAACGAGATCAAGAATGTGTGGCACACTCATCTAAAGAA 359
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CAACTTCCAGGTA-GAACAGATAACGAGATCAAGAATGTGTGGCACACTCATCTAAAGAA 361
Query 360 AAGACTGGTTCAGAGCTCAGGAACTGCAGATGAACCGGCCTCGCCTTGTTCGAGTGGTTC 419
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 AAGACTGGCTCAGAGCTCAGGAACTGCAGATGAACCGGCCTCGCCTTGTTCGAGTGATTC 421
Query 420 TGTTTCCCGTGGGAAAGACGATAAGTCGTCTCAAGTAGAAGATTATTTGAACAGAGAGAA 479
|||||| ||||||||||| |||||||| ||||| |||||||||| ||||||||||||||
Sbjct 422 TGTTTCTCGTGGGAAAGATGATAAGTCATCTCACGTAGAAGATTCTTTGAACAGAGAGAC 481
Query 480 TAATCA--GGA--G--T---CTACATCTCTGTCTTCTGGTGGTTCCAACCATTCAA-ACC 529
|||||| ||| | | |||||||| |||||||||| ||||||||||| ||| |
Sbjct 482 TAATCATAGGAATGAGTTGTCTACATCTATGTCTTCTGGGGGTTCCAACCAA-CAAGATG 540
Query 530 AAC-AA-GAT-GATCCAAAGATCACGTTTGAGTATATAGAAGAAGCTTATAGTGAATTTA 586
| | || ||| || | || ||| ||||||||||||||||||||||||||| || ||||
Sbjct 541 ATCCAAAGATAGA-CGAAC--TCAGGTTTGAGTATATAGAAGAAGCTTATAGCGAGTTTA 597
Query 587 ACGACATTATT---CAAGAGGTAGACAAACCCGATCTGCTGGAGATACCTTTTGATTCAG 643
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 ACGACATTATTATTCAAGAGGTAGACAAACCCGATCTGCTGGAGATACCATTTGATTCAG 657
Query 644 ATCCTGACATTTGGAGTTTCTTAGATACTTCAAACTC----CA-C--T-----GCAAATG 691
||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct 658 ATCCTGACATTTGGAGTTTCTTAGATACTTCAAACTCATTTCAACAATCCACTGCAAATG 717
Query 692 AGAACAGCTCAGGTTCAAGA--A-CAACAGAAGAAGAGTCTGATGAGGAAGAGGTTAAGA 748
||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 718 AGAACAGCTCAGGCTCAAGAGCAACAACAGAAGAAGAGTCTGATGAGGATGAGGTTAAGA 777
Query 749 AATGGTTCAAGCACCTGGAAAGCGAACTCGGGTTAGAAGAAGATGATGATCAGCAACAAC 808
|||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 778 AATGGTTCAAGCACCTAGAAAGCGAACTCGGGTTAGAAGAAGACGATAATCAACAACAA- 836
Query 809 ATAAACAGGGAACACAACACAAAGAAGAAGAATCATCATCGTCACTGTTGAAGACCTACG 868
|| || || | | |||||| ||||||||| ||||| ||||||| |||||
Sbjct 837 -TA--CA---AAGA-A-------GAAGAATCATCATCATCATCACTCTTGAAGAACTACG 882
Query 869 AGCTCATGATACATTAATGAAA 890
||||||||||||||| || |||
Sbjct 883 AGCTCATGATACATTGATAAAA 904
> AT1G16490.1 | Symbols: ATMYB58, MYB58 | myb domain protein 58
| chr1:5629655-5630995 REVERSE LENGTH=1180
Length=1180
Score = 174 bits (94), Expect = 1e-42
Identities = 232/296 (78%), Gaps = 20/296 (7%)
Strand=Plus/Plus
Query 598 CAAGAGGTAGACAAACCCGATCTGCTGGAGATACCTTTTGATTCAGATCCTGACATTTGG 657
||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct 701 CAAGAGGTAGACAAACCAGAGCTGCTGGAGATGCCTTTTGATTTAGATCCTGACATTTGG 760
Query 658 AGTTTCTTAGATACTTCAAACTCCACTGCAAATGAGAACAGCTCAGGTTCAAGAACAACA 717
|||||| ||||| |||| ||| || | | || | | ||| | | | ||| | |
Sbjct 761 AGTTTCATAGATGGTTCAGACT-CA-TTCCAA-CA-ACCAG---A-GAAC-AGAGC-TC- 809
Query 718 GAAGAAGAGTCTGATGAGGAAGAGGTTAAGAAATGGTTCAAGCACCTGGAAAGCGAACTC 777
|||||||||| || || || ||| | |||||||| |||||||||||||||||||||
Sbjct 810 -TTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTTAAGCACCTGGAAAGCGAACTC 868
Query 778 GGGTTAGAAGAAGATGATGATCAGCAACAACATA-AACAGGG-AACACAACACAA-AGAA 834
|||||||||||| | ||| | || |||||||| | ||||| || ||| || ||||
Sbjct 869 GGGTTAGAAGAAAACGATAACCAACAACAACA-ACAACAGCATAA-ACAGGG-AACAGAA 925
Query 835 GAAGAATCAT-CATCGTCACTGTTGAAGACCTACGAGCTCATGATACATTAATGAA 889
|| ||| ||| |||| ||||| ||| ||| ||||||||| | |||||||||||||
Sbjct 926 GATGAA-CATTCATCATCACTCTTGGAGAGTTACGAGCTCCTCATACATTAATGAA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5