BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477089
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79220.1 | Symbols: | Mitochondrial transcription terminati... 1831 0.0
> AT1G79220.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:29798935-29800525 FORWARD
LENGTH=1591
Length=1591
Score = 1831 bits (991), Expect = 0.0
Identities = 1187/1278 (93%), Gaps = 28/1278 (2%)
Strand=Plus/Plus
Query 102 GAAAATTTGCTCCTTTATTTCTCCAGTTTCTTAGTCTCTTGATTACGACCTTGAAATGCA 161
||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||
Sbjct 238 GAAAATTTGCTCCTTTATTTCTCCAGTTTGTTAAACTCTCGATTACGCCCTTGAAATGCA 297
Query 162 TTCGACCGGGAAGAGAAATTTCTTAGCTGTTATCAGATTACTGTTTACTAGTTCGAGTTT 221
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 298 TTCGACCGGGAAGAGAAATTTCTTAGCTGTTATCAGATTATTGTTTACTAGTTCGAGCTT 357
Query 222 GATCAGAAAGGCTGGTTTTAGAAAT-TCCTTGTCTGCTACCTTTGCCACCAGGTGTTCGA 280
| ||||||||||||||| ||||||| || || |||||||||||| |||||||||||||||
Sbjct 358 GGTCAGAAAGGCTGGTTGTAGAAATCTCATT-TCTGCTACCTTTACCACCAGGTGTTCGA 416
Query 281 CGTTATGCCTGAACGACGCTGACA-AATGCATTGTGGATTCTGAGCTATCGGTTGTATCG 339
||||||||||||| || |||| | ||||||||| ||||||| | ||| |||||
Sbjct 417 CGTTATGCCTGAATGAATCTGA-AGAATGCATTGAGGATTCT--G--ATC-----TATCG 466
Query 340 TCTAGGAGAGTGAATCACA-TaaaaaaaGTTGAATG-CGTTGGTGAAAAAGAGAAAGTGA 397
||||||||| || | | | | | |||| | | ||||||||||||||||||||||
Sbjct 467 TCTAGGAGA---AA-AAAATTTGATTATGTTGGA-GAAGTTGGTGAAAAAGAGAAAGTGA 521
Query 398 GAGAGATTCCTAGTAGTCCTTTACAAGTTCTACGAAGATGGGGTTGTGATGATGATGAAA 457
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 522 GAGATATTACTAGTAGTCCTTTACAAGTTTTACGAAGATGGGGTTGTGATGATGATGAAA 581
Query 458 TATCAAAGCTTTTTACTCGTAGGCCTGCTTTGCAGAGAGCCAATGTTGCTCAGCTAGAGT 517
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 582 TATCCAAGCTTTTTACTCGTAGGCCTGCTTTGCAGAGAGCCAATGTTGCTCAGTTAGAGT 641
Query 518 TTAAGTTAAGCCTTCTTAAGCCGCTGGGGATCACGTCTTCAGATCTTGTGAAGATTCTTA 577
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 642 TTAAGTTAAGCCTTCTTAAGCCACTGGGAATCACGTCTTCAGACCTTGTGAAGATTCTTA 701
Query 578 ATTGTCGTCCGAGATTCTTTAGTTGCCGTATTCACCTTGTCCTTGATGAAAGAATCAACT 637
| |||||||| || |||||||||||||| | ||||||||||||||||| |||||||
Sbjct 702 ACTGTCGTCCTAGGTTCTTTAGTTGCCG---T---CTTGTCCTTGATGAAAGGATCAACT 755
Query 638 ACTTCATGGAGATTTTGGGGTCAAAAGAGGTGTTGCGCAGAGTCATTATCCGGAATCCGT 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ACTTCATGGAGATTTTGGGGTCAAAAGAGGTGTTGCGCAGAGTCATTATCCGGAATCCGT 815
Query 698 CACTCATGTTGTATGACCTCGATGACAAGATCAAACCCGCGATAGAGTTCTACAAAGGGC 757
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 816 CACTCATGTTGTATGACCTCGATGACAAGATCAAACCCGCGATAGAATACTACAAAGGGT 875
Query 758 TGGGCTGTAGCCAACAGGATCTTGTCGCAATGTTGATATCCCGACCCACGTTGATTCCAA 817
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 876 TGGGCTTTAGCCAACAGGATCTTGTCGCAATGTTGATATCGCGACCCACGTTGATTCCAA 935
Query 818 GAACAAACTTTAACAAAGAGAAGTTTGAATACATTCAGAAAACTGGGGTCACAAGAGAAT 877
|||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 936 GAACAAACTTTAACAATGAGAAGTTTGAATACATTGAGAAAACTGGAGTCACCAGAGAAT 995
Query 878 CCAAGATGTTTAAATATGTTGCAGCCATCATCGGGGTCTCGAGGATGGAGACAATCGACG 937
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 996 CCAAGATGTTTAAATATGTTGCAGTCATCATCGGGGTCTCGAGGATGGAGACAATCGAAG 1055
Query 938 AGAAAGTTAGAAACTTGGAAAAGTTTGGGTTCTCAGAAGAAGAGATTTGGCATCTGTGTG 997
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 1056 AGAAAGTTAGAAACTTGGAAAAGTTTGGGTTCTCGGAAGAAGAGATTTGGCACCTGTATG 1115
Query 998 GAAAATGCCCAATCCTtctctctctctcAGTTGAGAAAGTACAGAGAAACATGACTTTCA 1057
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1116 GAAAATGCCCAATCCTTCTCTCTCTCTCTGTTGAGAAAGTTCAGAGAAACATGACTTTCG 1175
Query 1058 TCATAGCCTCGATGAAACTTCCAGCTCATTCCGTGGTTAAGCACCCTTGTTTGCTTCTCC 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TCATAGCCTCGATGAAACTTCCAGCTCATTCCGTGGTTAAGCACCCTTGTTTGCTTCTCC 1235
Query 1118 TCAACCTCGAGTCTCGTCTAAAACCTCGTGCGGATCTCGTTAAGAGAGTCTTAGAAATGC 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1236 TCAACCTCGAGTCTCGTCTAAAACCTCGTGCGGATCTCGTTAAGAGAGTCTTGGAAATGC 1295
Query 1178 GTCTGAAGCCACTAATAAAAGAAGTGAACATTTTCACAGCGCTAAGGATGAGCGAGAAAC 1237
|||| |||||| | ||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1296 GTCTAAAGCCATTGATAAAAGAAGTGAGCATTTTCAGAGCGGTAAGGATGAGCGAGAAAC 1355
Query 1238 GGTTCTTGAAGGTTTATGTAATGTGTCATCCAAAAGATATTGCAGAC-GAGCTGATGGAG 1296
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1356 GGTTCTTGAAGGTTTATGTAATGTGTCATCCACAAGATATTGCA-ACCGAGCTGATGGAG 1414
Query 1297 TTTTACGAGAAATCCAAAAACATGAAACGTTTGGCTGAGAAATACAAGAAATACATCCGT 1356
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1415 TTTTACGAGAAATCCAAAAACATGAAACGTTTAGCTGAGAAATCCAAGAAATACATCCGT 1474
Query 1357 AAAGGATTCCCCTTTTGA 1374
||||||||||||||||||
Sbjct 1475 AAAGGATTCCCCTTTTGA 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5