BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477093
Length=4237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79245.1 | Symbols: | pseudogene of unknown protein | chr1:... 1594 0.0
AT1G80865.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 124 6e-27
> AT1G79245.1 | Symbols: | pseudogene of unknown protein | chr1:29804735-29809514
REVERSE LENGTH=4780
Length=4780
Score = 1594 bits (863), Expect = 0.0
Identities = 1248/1424 (88%), Gaps = 66/1424 (5%)
Strand=Plus/Plus
Query 231 CTTACGCGTCTCTGATTTTTGTTTTCTTCTCTACGTTTCTTA----T-TCGTCTCGAAGG 285
|||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 318 CTTACGCGTCTCTGATTTTTGTTTTCTTCTCTACGTTTCTTATTCGTCTCGTCTCGCAGT 377
Query 286 TTTTTTGGAAGCTAATTACGATCGGATCATCGATTCTGAATTTTCGTTTCTGTTGTTGTA 345
|||||||||||||||||| |||| |||||||| | ||||| |||||||||||||
Sbjct 378 TTTTTTGGAAGCTAATTATGATCCGATCATCG---C-----TTTCGATTCTGTTGTTGTA 429
Query 346 GATTGTGGATGATGCTATGATCGATCGGTGATTG--TTTTTCTGGATTTTTGTCACGCGT 403
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 430 GAGTGTGGATGAGGCTATGATCGATCGGTGATTGTTTTTTTCTGGATTTTTGTCACGCGT 489
Query 404 TTTCTCTACGATACGTCTTCAAGCGAATTTTGATCCGATCTTCGTTCTCGCTTCTGAGTT 463
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 490 TTTCTCTAGGATACGTCTTCAAGCGAATTCTGATCCGATCTTCGTCCTCGCTTCTGAGTT 549
Query 464 TTCTCTTTTCACTGATT-ATTTATTCTTCTAGGGGTTGGTTTCTAAATTGCATCGAGTGG 522
||||||| ||||||||| ||| ||| ||||||| ||||||| |||| |||||| |||||
Sbjct 550 TTCTCTTCTCACTGATTAATTGATT-TTCTAGGTTTTGGTTTATAAACTGCATCAAGTGG 608
Query 523 TCTGTTCTAATCCATGTTATTTGCTTCTCGTTTTATTGTTGATTTAGATTTAGATTGTGG 582
||| ||||||| ||||||||||||| ||||||||| ||| || ||||||||||||||
Sbjct 609 TCT-TTCTAATTCATGTTATTTGCTCCTCGTTTTA---TTG--TT-GATTTAGATTGTGG 661
Query 583 AGGATGCTATGATTGATCGGTGATGGCTTTGATTGATCCTTGTCATGCGGTTTCTTAGGA 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 662 AGGATGCTATGATTGATCGGTGATGGCTTTGATTGATCCTTGTCACGCGGTTTCTTAGGA 721
Query 643 TCTTTTGTCT-TTCTACTCCCAATTTTTAATTCCTATGCCGAtttttt-t-CTGTATAAG 699
||||||||| ||||| ||| |||||||||||||||||||| |||||| | || ||||||
Sbjct 722 TCTTTTGTCCCTTCTATTCCAAATTTTTAATTCCTATGCCGTTTTTTTCTTCTATATAAG 781
Query 700 CGAAAAATATCATCTTTCTTTGATGCAGATCGTCAAGGCACCGGGATTGCTCTGATAAAT 759
|| ||||||||||| | || | ||||||||||| ||||||||| ||||||| |||||||
Sbjct 782 CGGTAAATATCATCTCTATTGGTTGCAGATCGTCGAGGCACCGGAATTGCTCCGATAAAT 841
Query 760 ATCTC-TTCT-CGTCTATCATCGATTTAGGTTTCTTCTGATTTCTCGTGCTACAGCtttt 817
|||| |||| | ||| ||||||||||||||||| ||||||||||| || |||| || ||
Sbjct 842 CTCTCATTCTTC-TCTGTCATCGATTTAGGTTTCGTCTGATTTCTCTTGTTACATCTGTT 900
Query 818 tttATTTT-CC-C--T-ACCTCTGTTCTATCTCGTCTCTGTTTATCTTGAAGGATGTGTG 872
|| || | || | | ||||||||||||| ||||||||| | || | |||||||||| |
Sbjct 901 TT-ATCTAACCACAATTACCTCTGTTCTATTTCGTCTCTGCTAAT-T-GAAGGATGTG-G 956
Query 873 T-GATCTGTCGTCGCTCCCTTTTACCTCTGCTTCTGGCGGtttcttctttccctatgctt 931
| ||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||
Sbjct 957 TTGATCTGTCGTCGCTCCCTTTTAC-T-T--T-CTGGCGGTTTCTTCTTTCCCTTTGCTT 1011
Query 932 cctttttaggattt-ttagatgaccagatttcttttcttttctgattttttGGAGAAATT 990
||||||| ||| || |||||| ||| ||||||||||||||||||| ||| ||||||||||
Sbjct 1012 CCTTTTT-GGAGTTCTTAGATTACCTGATTTCTTTTCTTTTCTGAATTTCTGGAGAAATT 1070
Query 991 TCCA--TGTTAGGTCGT--AGATGTTCAAGGCATTGTTGGAGGGAGGATGGTTTGCGCAT 1046
|| | |||||| | || ||||||| ||||||||||||||||||||||||||| || ||
Sbjct 1071 TCTACGTGTTAGATTGTGTAGATGTTGAAGGCATTGTTGGAGGGAGGATGGTTTACGTAT 1130
Query 1047 GATTTGGTGTTTATGGTTTCTTCGCATCTATACACCTTTGTTTGCCTTCTTATTGATTTA 1106
|| ||||||||| |||||||||| | |||||||| |||| | | || |||||| ||||
Sbjct 1131 GAGTTGGTGTTTTTGGTTTCTTCTCTTCTATACAACTTT-TG-GTCTAATTATTGTTTTA 1188
Query 1107 TTTAATATTGGCTATTGTTGGTGAGGTATGATTTT-TTCCTTTGTGTCTTGTTGCGTTTT 1165
|||||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||
Sbjct 1189 TTTAATATTGGCTAATGTTGGTGAGGTATGATTTCGTTC-TCTGTGTCTTGTTGTGTTTT 1247
Query 1166 CCAGATTCTCTTCATCAATCAATTCACTTTGTTTCTCTGCCGTGTACACATTCA-AGTGA 1224
|||||||||||||||||||||||||| | ||||||||| | ||||||||||||| | |||
Sbjct 1248 CCAGATTCTCTTCATCAATCAATTCAGTCTGTTTCTCTTCTGTGTACACATTCAGA-TGA 1306
Query 1225 CAGATGATTATATATTCCTTCCAAACGAGTTTTTTCTTATATCTTGTCCtttttttAAGT 1284
|||||| ||||||||||| || |||||||||||| ||| ||||||||||||| |||||
Sbjct 1307 AAGATGAACATATATTCCTTGCAGACGAGTTTTTTCCTATCTCTTGTCCTTTTTATAAGT 1366
Query 1285 TGTTTTTCTATAGAACGACTTCAAGTTTCTCAGTAGTAAC-ATGTCTTAGCTCCTCCCAT 1343
||| |||||| ||| | ||||||||||||||||| | | ||||||||||||||| |||
Sbjct 1367 AGTTATTCTATTGAA-GTCTTCAAGTTTCTCAGTAATG-CTATGTCTTAGCTCCTCTCAT 1424
Query 1344 GTGGTTTATTCAGGTTCCGTTCCTCTTTGCCTCCGGGATCTGTTGCAGTATGTTTGTTCT 1403
|||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||
Sbjct 1425 GTGGTTTATTCAGGTTTTGTTCCTCTTTGCCTCCGGGATCTGTTGCAATCTATTTGTTCT 1484
Query 1404 AACATACTCCCTGGCTAACTGGTCTATCCCTCTTTCTCTCTGGTGATAGTGTTTGATCCT 1463
||||||| |||||| |||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1485 AACATACGCCCTGGTTAACTGGTCTATTCCTCTTTCTCTCTATTTATAGTGTTTGATCCT 1544
Query 1464 ACTGTCATATGCTTGTGACGATGtttttttttATGTTAAGTGTCCCCCTTCTTTTAGGTT 1523
||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1545 ACTCTCTTATGCTTGTGACGGTGTTTTTTTTTATGTTAAGTGTCCCA-TTCTTTTAGGTT 1603
Query 1524 TTTTGAGGATGCAAAGAAGGCTAGTTCTGTCTGAGAT-TATTTTGAAAGATGTCTTTGAT 1582
|||||| ||||||||||||||||||||||||| || | |||| |||||||| ||||||||
Sbjct 1604 TTTTGAAGATGCAAAGAAGGCTAGTTCTGTCTCAG-TGTATTCTGAAAGATATCTTTGAT 1662
Query 1583 CTGTCGTGGTTTCCTGTTACCTCTT-TGGCGGTGTCTTATCTCC 1625
||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 1663 CTGTCGTGGTT-CCTGTTACCT-TTCTGGCGGTGTCTTATCTCC 1704
Score = 1027 bits (556), Expect = 0.0
Identities = 777/878 (88%), Gaps = 38/878 (4%)
Strand=Plus/Plus
Query 1652 TTTTAGATCGTAGAGGTCAAGGCATTGTGGGAGGGAAAGATGGTATTCGTATAATTTTGT 1711
||||| |||||||||||||||||||||| |||||||| |||||||| || |||||||||
Sbjct 1758 TTTTAAATCGTAGAGGTCAAGGCATTGTTGGAGGGAAGGATGGTATGAGTTTAATTTTGT 1817
Query 1712 GTTTCTGGTTACTTCTCATCTATACACCTTTTTT-CCCCTAATTGATTTATCTAATATTG 1770
|||||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||
Sbjct 1818 GTTTCTGGTTACTTCTCATCTACACA-CTTTTTTCCCCCTAATTGTTTTATCTAATATTG 1876
Query 1771 GCTATT-TT-T-GGTGAGCTATGATTTGTCCTCTGTGTC-TGTGTTTCCCAG-ATTTTCT 1825
|||||| || | ||||| |||||||||||||||||||| | |||||||||| |||||||
Sbjct 1877 GCTATTATTGTCAGTGAGGTATGATTTGTCCTCTGTGTCTTATGTTTCCCAGAATTTTCT 1936
Query 1826 TCACAAATCACTTCACTCCGTTTCTCTGCTGTGTACACACTTGAAAGATGATCATATATT 1885
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 TCACCAATCACTTCACTACGTTTCTCTGCTGTGTACACACTTGAAAGATGATCATATATT 1996
Query 1886 CCTTCCAAACGAGTCTGTTCTTATGTCTTGTCCTATTAAGTAAGTTTTTGTACTTAACGT 1945
|||||||||||||| ||||||||| |||||||| |||||| |||||||||||| | | |
Sbjct 1997 CCTTCCAAACGAGTTTGTTCTTATACCTTGTCCTTTTAAGT-AGTTTTTGTACTGAGCAT 2055
Query 1946 TTTCAAATATCTTAGG-T-TAAATATCTGAGCTCCTCTGGTGTAGAAGGCTTGGTCTGAG 2003
|||||||||||||||| | | || |||||||||||||| || ||||||||||| |||||
Sbjct 2056 TTTCAAATATCTTAGGATATCTATCTCTGAGCTCCTCTGATGGAGAAGGCTTGGCCTGAG 2115
Query 2004 GTTTGGACTGTACCGTCAGGGAGTTTTCAACATGACTTGCTATTTGATGTTTCAGGTTAA 2063
|| ||||||||||| |||||||||| ||||||||||||| | |||||| |||||||||||
Sbjct 2116 GTCTGGACTGTACCATCAGGGAGTTCTCAACATGACTTGATTTTTGATTTTTCAGGTTAA 2175
Query 2064 AAGTAGATCTTCCTAGTGATGTTGGCATTTCTGTTTTAAGCCTAAGGCCCTGTCTTTTGT 2123
| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 AGGTAGATTTTCGTAGCGATGTTGGCATTTCTGTTTTAAGCCTAAGGCCCTGTCTTTTGT 2235
Query 2124 TATAGATATTCGAGGTTCTAAAAGAGAAAAGCTTCAGGTTTACTAAATAGATTCTTTCCC 2183
||||||||||| || || |||||| |||||| |||||||||||||||| |||||||||||
Sbjct 2236 TATAGATATTCAAGCTTATAAAAGGGAAAAGGTTCAGGTTTACTAAATGGATTCTTTCCC 2295
Query 2184 CTTTATCTCTGTTGGTGTTATCTCTCATGCTACATCTATATTAGTGATGGCTTGTTTTTA 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 CTTTATCTCTGTTGGTGTTATCTCTCATGCTACATCTATATTAGTGATGGCTTGTTTTTA 2355
Query 2244 TGT--G--AAGTGCTCCTCTCCCCTTGTTTATGGGTATGTTGAGGATGCAAAGGAGGCAA 2299
||| | ||||||||| ||||||| | || || ||||||||||||||||||| |||||
Sbjct 2356 TGTATGTGAAGTGCTCCGCTCCCCTA-TATA-GG-TATGTTGAGGATGCAAAGGTGGCAA 2412
Query 2300 GTTCTGTTTTGATTTATTTTCCTCGAAATTTTCATCTACAGTCTTTGTCTTTTCCTTGAA 2359
||||| |||||| |||||| |||||||||||||||||||||| | |||||| ||| |
Sbjct 2413 GTTCTACTTTGATCTATTTTTCTCGAAATTTTCATCTACAGTCCT---CTTTTCATTGGA 2469
Query 2360 GATGTCTCTATTTCTGATTTTATGCTCT--A-------A------A--TGCTAATCACTT 2402
|||||||||||||||| || |||||||| | | | ||||||||||||
Sbjct 2470 GATGTCTCTATTTCTGGTTCTATGCTCTGCATTTTCCTATGGTTTAAATGCTAATCACTT 2529
Query 2403 CGGCTTGAGATCTTCTCTTTCTGTATGAATTCATTATCTTCATATAGGAATTTGGAAGAT 2462
||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2530 CGGCTCGAGATCTACTCTTTCTACATGAATTCATTATCTTCATATAGGAATTTGGATGAT 2589
Query 2463 GCAAGGACAAGTTCTGCTTCGACCTGTTCGCCTAGATT 2500
|| ||||| | ||||| |||||||||||||||||||||
Sbjct 2590 GCTAGGACGA-TTCTGTTTCGACCTGTTCGCCTAGATT 2626
Score = 833 bits (451), Expect = 0.0
Identities = 648/735 (88%), Gaps = 45/735 (6%)
Strand=Plus/Plus
Query 2501 GAGGTTCCATCTTTGGTT-GATTCAGGTGTCTTTTGTG--AAT-TAC-TCTGTAGGTTTA 2555
|||||||||||| ||||| |||||||||| ||||| | ||| | | |||| ||||||
Sbjct 2952 GAGGTTCCATCTCTGGTTGGATTCAGGTG--TTTTGAGCTAATCTTCTTCTG--GGTTTA 3007
Query 2556 CTTCTCTACCATACTTGTTCTACCGATTTGAAGATTTGTCTTTTGTACC-TT--TGATGA 2612
|||||||||||||| | ||||||||||||||||||||||||| |||||| || ||||||
Sbjct 3008 CTTCTCTACCATAC-T-TTCTACCGATTTGAAGATTTGTCTTCTGTACCTTTGATGATGA 3065
Query 2613 TTCTCAGTTTTGTAGCAATGTCTCAGTTTTGCGCCTTCTAGTCA-TGAA--AC--TGCCA 2667
|||||||||||| ||||||| ||||||||| ||||||||||||| | || || | |||
Sbjct 3066 TTCTCAGTTTTGCAGCAATGACTCAGTTTTTCGCCTTCTAGTCATTAAACTACTTTCCCA 3125
Query 2668 CAATGAGAT-CTTTAGTGTTTTTGTAGGTACTTTCACACTTGTTAG-AAATGT-TATGAA 2724
||||||||| | ||||||||||||||||| |||||||||||||||| || || ||||
Sbjct 3126 CAATGAGATAC-TTAGTGTTTTTGTAGGTTCTTTCACACTTGTTAGCAAGGGTATATG-- 3182
Query 2725 TTTGTTGTCGTTCTCAGAAGTTGGTAGGAATGAATCACAGATGTCATTGTTTATTTTTGA 2784
| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 3183 TATGTTGCCGTTCTCAGAATTTGGTAGGTATGAATCACAGATGTCATTGTTTATTATTGA 3242
Query 2785 TAACAT--GTGATTCTTGCTGGTAGTGTGAAATCTTGAGGGCAGGCCCATAGAAGGTGAA 2842
|||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 3243 TAACATAAGTGATTCTTGCTGGTAGTGTGACCTCTTGAGGGCAGGCTCATAGAAGATGAA 3302
Query 2843 GAGCCTCTTGGTTTTGATGATAATGCCTCCCTACTTCTGACTTCTGAGGTTTCTTTCTTC 2902
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 3303 GAGCCTCTTGGTTTTGATGATAATG-CTCCCTACTTCTGAGTTCTGAGGTTTCTTTATTC 3361
Query 2903 CTGGGTTGTAGCTGGTTTAATGGTTCTGTAGACATTTGATAATGAAGTC-CTCACTTCAT 2961
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3362 CTGGGTTGTAGCTGGTTTAATGGTTCTGTAGACATTTGATAATGAAGTCTCTCACTTCAT 3421
Query 2962 TTTGTCTGGGTGATGTAATATGTTATCAGTGGATTTCAGGTGAGGCTTAATCTCATGGAT 3021
||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 3422 TTTGTTTGGGTGATGTAAAATGTTGTCAGTGGATTTTAGGTGAGGCTTAATCTCATGGAT 3481
Query 3022 TATTCTTGTGGAATGCTCTCAGGTTAATCAGTGAAAATTGAGAAAATGACCTTACTTCTG 3081
||||||| || ||| | ||||||| |||||||||||||||||||| ||| | |||
Sbjct 3482 TATTCTTTTGAAATCCCCTCAGGTGAATCAGTGAAAATTGAGAAAGTGA--TG--TTC-- 3535
Query 3082 CTCAACTCCTCATCTCTTGAA-CCTTAATTTGCCCTGTCACACATTGAAGCCTATTTTTT 3140
|||| || ||||||| || |||| |||||| ||||||||||||||||||||||||
Sbjct 3536 ---AACTTCTTATCTCTT-AATCCTTCATTTGCTCTGTCACACATTGAAGCCTATTTTC- 3590
Query 3141 GGTTGCAGTTTGTGAAGTTTTCATGGGAAGCATTGTCTTTGGAGTTGTTCACTGAAGTTG 3200
||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 3591 GGTTGCAGTTTGTTAAGTTTTCATGGGAAGCGTTGTCTTTGGAGT-GTTC--TGAAGTTG 3647
Query 3201 ATTTTTAATCCTGAA 3215
| ||| |||||||||
Sbjct 3648 ACTTT-AATCCTGAA 3661
Score = 555 bits (300), Expect = 2e-156
Identities = 355/382 (93%), Gaps = 1/382 (0%)
Strand=Plus/Plus
Query 3857 tttt-ttttatatatgtatatatatGCAAAGATTATATCTCCGAGTTTGGAATCGTCTCT 3915
|||| || ||| ||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 4393 TTTTATTGTATGTATATATATACATACAAAGATTATATCTCCGAGTTTGGAATCGTCTCT 4452
Query 3916 CATCTTGTTTTTGTTGTTGTTGACAGGGCTTTAGAAGAATTAAGGGGTCAGAGCAATGGG 3975
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
Sbjct 4453 CATCTTGTTTTTGTTGTTGACGACTGGGCTTTAGAAGAATTAAGGAGTCAGAGCAATGAG 4512
Query 3976 AATTTGGACATGAGTATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGATGATGTTCA 4035
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4513 AATGTGGACATGAGTATTTTGTGAGAGGCCAACCTGAGCTTTTGGTGAAGATGATGTTCA 4572
Query 4036 AAACTGGGATGAAGAGGATTGAGGAACTTGCAGCCAAACGCCGAGCAAAGAAAAAGAAAG 4095
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 4573 AAACTGGGATGAAGAGGTTTGAGGAACTTGCAGTCAAACGCCGAGCAAAGAAAAAGAAAG 4632
Query 4096 CCAAAGCTGAAGCGGAAGTAGAGGATCGCTTGCAACACTTGAGAATCTGATCAAAAAATC 4155
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 4633 CTAAAGCTGAAGCGGAAGTAAAGGATCGCTTGCAACACTTGAGAATCTGATCAATAAATC 4692
Query 4156 TCTTCCTTTTTATGACTGAAATAAGCTCTTGTATTGTTTCTATCAATAACAATTTAGTCT 4215
| ||| ||| |||| | ||||||||||||||||||||| |||||||||||||||||| |
Sbjct 4693 TTTTCGATTTAATGAATTAAATAAGCTCTTGTATTGTTTGTATCAATAACAATTTAGTGT 4752
Query 4216 GTCAATAAAATTGATGGTTTTT 4237
| ||||||||||||||| ||||
Sbjct 4753 GGCAATAAAATTGATGGGTTTT 4774
Score = 283 bits (153), Expect = 9e-75
Identities = 212/238 (89%), Gaps = 14/238 (6%)
Strand=Plus/Plus
Query 1 AGTTTTCTCTACACGGTCGCTGGGGATATTCTTCTAAACGCGTCTCTGAttttttttGAA 60
|||||||||||| || ||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 37 AGTTTTCTCTACGCGTTCGCTGGTGATATTCTTCTAAACGCGTCTCTGA-TTTGTTTGAA 95
Query 61 TCGATCATCGTTCCTACTTCTGGATTTTCACTTTCCATGGATAATTT-ATTTTTCTAGGG 119
||||||||||||||| |||||||| | ||||||| ||| |||| ||||||||||||
Sbjct 96 TCGATCATCGTTCCTTCTTCTGGA---T---TTTCCATCGAT-ATTTGATTTTTCTAGGG 148
Query 120 TTTGTTTCTAAA--GCATCGATGGCTTTTTATGTTCATGCGATTTACTTTTTCCCTGTGT 177
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 149 TTTGTTTCTAAATTGCATCGATGGCTTTTTATGTTCATGCGATTTACTTTT-CCCTCTGT 207
Query 178 TATTCTAGATTGTGGTTTGATGATTTGATCGTTC-GGTGATGTCTTTTATGGATCTTA 234
||||||||||||| ||| |||||||||||||||| || |||| ||| ||||||||||
Sbjct 208 TATTCTAGATTGTTGTTCGATGATTTGATCGTTCAGG-GATGGATTTGATGGATCTTA 264
Score = 241 bits (130), Expect = 5e-62
Identities = 157/170 (92%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 3592 GTCGTGGATGATCCATCATTGGATCCAATTATCTCGTGGAGCAAGAGCAACAATAGCTTC 3651
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 4230 GTCGTGGATGATCCATAATTGGATCCAATTATCTCGTGGAGCAAAAGCCACAATAGCTTC 4289
Query 3652 ATCGTTTGGAATCTGGAAGGGCTTCACCGAGAGGTTCTGCCGAAATCGATAGAATTTGGC 3711
|||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 4290 ATCGTT-GGAATCTGGAAGCGCTTCACCGAGAAGTTCTGCCGAAATCGATAGAATTTGGC 4348
Query 3712 AAACATTACTTGAAGTTCATGACCGAACTCAAGTTTTATGTGAGTTTTAT 3761
| |||||||||| |||| |||||||||||||| || |||| ||||||||
Sbjct 4349 AGACATTACTTGGAGTTTATGACCGAACTCAACTTACATGTAAGTTTTAT 4398
Score = 191 bits (103), Expect = 5e-47
Identities = 149/170 (88%), Gaps = 7/170 (4%)
Strand=Plus/Plus
Query 3237 TTACAGAAGTGTCTGTGCTGTTTCAGTATTCGAGGTTTGCTTTTATCTGCCAGTCGTTCC 3296
|||||| ||||||| ||| ||| |||||||||||| | ||||| ||||||||||||||||
Sbjct 3716 TTACAGGAGTGTCTATGCCGTTGCAGTATTCGAGGATCGCTTTGATCTGCCAGTCGTTCC 3775
Query 3297 TTGTTACtttttttGCTTTTG---TTCTT----ACTGGCCTTGCTTTTCTCTGGTTCATG 3349
||||||| ||||| ||||||| ||||| ||| ||||||||||||||| |||||||
Sbjct 3776 TTGTTACCTTTTTCGCTTTTGCAGTTCTTTCTTACTTGCCTTGCTTTTCTCTCGTTCATG 3835
Query 3350 TATTACTTGATGCAAGTCTTGACACTTTCCCGAGATTTGACCAAACTCTT 3399
|||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 3836 TATTACTTGATGCAAGTCTTGAAACTTTCCCGATATTGGACCAAACTCTT 3885
Score = 143 bits (77), Expect = 2e-32
Identities = 89/95 (94%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 3766 TTTGGAATCGTCTCTCATCTTGTTTTTGTTGTTGTTGACAGGGCTTTAGAAGAATTAAGG 3825
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 4438 TTTGGAATCGTCTCTCATCTTGTTTTTGTTGTTGACGACTGGGCTTTAGAAGAATTAAGG 4497
Query 3826 GGTCAGAGCAATGGGAATTTGGACATGAGTAtttt 3860
|||||||||||| |||| ||||||||||||||||
Sbjct 4498 AGTCAGAGCAATGAGAATGTGGACATGAGTATTTT 4532
> AT1G80865.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:30389538-30390557 FORWARD LENGTH=721
Length=721
Score = 124 bits (67), Expect = 6e-27
Identities = 79/85 (93%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 4024 AGATGATGTTCAAAACTGGGATGAAGAGGATTGAGGAACTTGCAGCCAAACGCCGAGCAA 4083
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 280 AGATGATGTTCAAAACTGGGATGAAGAGGATTGAGGAACTTGGAGCCAAACGCCGAGCAA 221
Query 4084 AGAAAAAGAAAGCCAAAGCTGAAGC 4108
|| ||||||| | ||||||| |||
Sbjct 220 AGGAAAAGAATTCTAAAGCTGCAGC 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 211202830030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5