BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477094
Length=2477
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79270.1 | Symbols: ECT8 | evolutionarily conserved C-termin... 3661 0.0
> AT1G79270.1 | Symbols: ECT8 | evolutionarily conserved C-terminal
region 8 | chr1:29815506-29819104 FORWARD LENGTH=2531
Length=2531
Score = 3661 bits (1982), Expect = 0.0
Identities = 2357/2525 (93%), Gaps = 77/2525 (3%)
Strand=Plus/Plus
Query 1 TATAGAATTAATTGTGTTAGTTAATGCCAAATTAAGATTCTCtttttt-tAATAACTTTT 59
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 36 TATAGAATTAATTGTGTTAGTTAATGCCAAATTAAGATTCTCTTTTTTAAAATCACTTTT 95
Query 60 TGAAGAAGCACTTTGAAGAGAGTTGTGTTAAGAATAGATTCCAGATGGAAAAGTTGGCAA 119
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 TGAAGAAGCACTTACAAGAGAGTTGTGTTAAGAATAGATTCCAGATGGAAAAGTTGGCAA 155
Query 120 TAAAAGATGTTTT-AGTTTTTTGCCTTGTCGTCTAATCCAACGGTCAATCTTCGTTCATA 178
|||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 156 GAAAAGATGTTTTAAG-TTTTTGCCTTGTCGTCTAATCCAACGGTCGATCTTCGTTCATA 214
Query 179 TCAAGAATCC--ATGACGTGGACCATTCTCTTCCCTCCATCTGTACCTCTTCTCAACCTC 236
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 215 TCAAGAATCCTTATGACGTGGACCATTCTCTTCCCTCCATCTGTACCTCTTCCCAACCTC 274
Query 237 TTTTTTAATTTATTTGCATCTAAAATAAATAAGAAGGATTGCaaaagaaaaaagga-aaa 295
| |||| || |||| |||| |||||||||||||||||||||||||||||||| | |||
Sbjct 275 TATTTT--TTAATTTACATCGAAAATAAATAAGAAGGATTGCAAAAGAAAAAA-TAGAAA 331
Query 296 aaaaaaactctgttcttctttcttcttcttc-t--tcgtaagccatttaccatttcttct 352
||||| |||||||||||||||||||||||| | |||||||||| |||||||||| | |
Sbjct 332 AAAAACTCTCTGTTCTTCTTTCTTCTTCTTCTTCGTCGTAAGCCA-TTACCATTTC-T-T 388
Query 353 ctctctcgtctctctgtttttctttGTTACGTATCTGTACTTTGTTTTCAAACATAAAAA 412
||| | | |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 389 CTC-C-C-TCTCTCTGTTTTTCTTTGTTGCGTATCTGTACTTAGTTTTCAAACATAAAAA 445
Query 413 TAAAAGATATCTTTTGTTGATG-T-T-TTCTTCTTG----A-AGATTTTCTACAGCTATT 464
||||| |||||||| | ||||| | | ||||||||| | ||||||||||||||| ||
Sbjct 446 TAAAACATATCTTTAGCTGATGTTGTCTTCTTCTTGATAAACAGATTTTCTACAGCTTTT 505
Query 465 TTTCTTTTCCTAATTAAATAATTCTTGAGA-ATTTCAAAACCCTCTGCAAAACAGATAAT 523
|||| ||| |||||| |||||||||||||| ||| |||||||||||| |||||||| ||
Sbjct 506 TTTC-TTT-CTAATTTAATAATTCTTGAGACTTTTTAAAACCCTCTGCGAAACAGATGAT 563
Query 524 TCGAGttttggtttcttcatctgtgttttgattttttcgtctttt-tgtc-t--t--aac 577
||||||||||||||||||||||||||||||||||||||||||||| | || | | |||
Sbjct 564 TCGAGTTTTGGTTTCTTCATCTGTGTTTTGATTTTTTCGTCTTTTAT-TCTTAGTCAAAC 622
Query 578 acataaatttcttttACTACTTCTTCGTAGATGACTTCTCATGTTCCAAAACATCCTCGT 637
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 623 ACATAAATTTCTTTTACTAC-TCTTCGTAGATGACTTCTCATGTTCCAAAACATCCTCGT 681
Query 638 AAATCCATTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCC 697
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AAATCCTTTGAAGATATGGTGAAGAATCTTAAAGTGGATCCTCTTGCTAAGGTCACTGCC 741
Query 698 TCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGT------CAGAGCCATCA 751
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 742 TCCACCACTTCCATGGTTTCTGCAAAAGAGAATAAGAATCAGTCAGAGGCAGAGCCATCA 801
Query 752 TATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGAGGCTACTATGGA 811
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 802 TATTATGAAACTCTTGAGACATATCAAGGCCTGCCTTGTCCTTATGGTGGCTACTATGGA 861
Query 812 TTCTACTATCCAGGTCTTGACGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGT 871
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 862 TACTACTATCCAGGTCTTGATGGTTCAGTTGGAGAAGCAAAGGATAATGGATACTATGGT 921
Query 872 TATGGAACAGAAGTTCAGTACCCGGTTATGCAAGGGGAAAATGGATCTTTGATCTACTTG 931
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 922 TATGGAACAGAAGTTCAGTACCCGGTAATGCAAGGGGAAAATGGGTCTGTGATCTACTTG 981
Query 932 ATGCCAGGGTTTCAATCTTATGATGCTAGTCAAACTTATATGCCTATAAGCCCGGTTGGT 991
|||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||
Sbjct 982 ATGCCAGGGTTTCAGTCTTATGATGCAAGCCAAACTTATATGCCTATAAACCCGGTTGGT 1041
Query 992 GTTTCTAGTCAAGCACTTCATTCGCCAATGTATGCAGCTCAGGGTTATTACCAGAACCAA 1051
|| || |||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1042 GTATCGAGTCAAGCACTTCATTCGCCGATGTATGCTGCTCAGGGTTATTATCAGAACCAA 1101
Query 1052 TTTGGTTATGGAGACGTTGCATCGCCGACCTATTTATGGGACCCTGTTGGAGACAAGTAT 1111
|||||||||| ||| ||| ||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1102 TTTGGTTATGCAGATGTTTCATCGCCCACATATTTATGGGACCCTGTTGGAGACAGGTAT 1161
Query 1112 GTGTATGGTGTTGCTTCAAATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCAT 1171
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GTGTATGGTGTTGCTTCATATACCCCACCCTTGAAACAGAACATATCTTCTTCAAGTCAT 1221
Query 1172 AATCACAACAATTATTACTCAAAGAGCAAGAACTCCTTCACGGGCCACGGCATGGGAGAT 1231
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1222 AACCACAACAATTATTATTCAAAGAGCAAGAACTCCTTCACGGGTCACGGCATGGGAGAT 1281
Query 1232 CGTCCTAAAACACCGCG---A--A--A-A-AACAGCTATGCCCCACTCCCACTGCATAAC 1282
||||||||||||||||| | | | | |||||||||||||||| |||||||| ||||
Sbjct 1282 CGTCCTAAAACACCGCGAAAAGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAAC 1341
Query 1283 CAAGAAAGAGGAAGAATTGCTTACCCGATGGACCCGGTAAAGAAAAAGTCTGGAGCTTTG 1342
||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1342 CAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTA 1401
Query 1343 AATCGGGATGAAACAGAGAAGGCGAAAGCGAGGAAC-AAAGAAAATGGTA-ATAGCGTAA 1400
||||||||||||||||||||||||||||||||| || ||||||||||||| | || | |
Sbjct 1402 AATCGGGATGAAACAGAGAAGGCGAAAGCGAGG-ACAAAAGAAAATGGTACA-AGTATGA 1459
Query 1401 ATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCCTGCTCGTTGG 1460
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1460 ATGACTTAGCAAACGGTCAAGATCATATTACCAATGGAGAATGTGAGTCATGTTCGTTGG 1519
Query 1461 ATGCTGAAGGGAATGAAAGGAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATA 1520
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 ATGCTGAAGGGAATGAAAGAAGCAACGGTGTTGGTTCTGTGATCAGAAGGGATCAATATA 1579
Query 1521 ACCTCACC-AGCTTTCAGACCAAATACGACGAAGCAATCTTTTTTGTGATAAAATCGTAT 1579
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1580 ACCTC-CCTAGCTTTCAGACCAAATACGAGGAAGCAATCTTTTTTGTGATAAAATCGTAT 1638
Query 1580 AGCGAAGATGACATACACAAGAGCATTAAGTACAATGTCTGGTCTAGTACTCTCAATGGG 1639
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1639 AGCGAAGACGACATACACAAGAGCATCAAGTACAATGTCTGGTCTAGTACTCTCAATGGG 1698
Query 1640 AACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGA-GGATTGCAGAGAAAAGTGG 1698
|||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||
Sbjct 1699 AACAAGAAGTTAGACAGTGCATATCAAGAATCTCAGAAGAAGGCT-GCAGACAAAAGTGG 1757
Query 1699 AAAGTGCCCAGTTTTCCTATTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGC 1758
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 AAAGTGCCCGGTTTTCCTGTTCTTCTCGGTGAATGCAAGTGGCCAATTCTGCGGTGTAGC 1817
Query 1759 TGAGATGATGGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTG 1818
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 TGAGATGATTGGACGAGTTGATTATGAGAAAAGCATGGAGTTCTGGCAACAAGATAAGTG 1877
Query 1819 GACTGGCTATTTTCCGGTCAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAATTACG 1878
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1878 GACTGGCTATTTTCCGGTGAAGTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACG 1937
Query 1879 ACATATCATACTAGAGAACAATGAGAACAAGCCTGTTACCAATAGCAGAGACACACAAGA 1938
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1938 ACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGA 1997
Query 1939 GGTGAGGTTGCCACAAGGGAATGAAGTGTTGAACATCTTCAAGAACTATGCAGCAAAGAC 1998
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1998 GGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAGAACTACGCAGCTAAGAC 2057
Query 1999 ATCTATATTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAA 2058
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2058 ATCTATTTTAGATGATTTTGATTTTTATGAAAACAGAGAGAAGGTTATGGTACAGAAGAA 2117
Query 2059 GCTAAGGTTCCCTCCTGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGGTTTCAAAAC 2118
||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2118 GCTAAGGTTCCCTCCGGTATTAAAGAAGAAAGAAGAAGACTTGGTTGCTGATTTTAAAAC 2177
Query 2119 AATGGAGATATCTAATACAGTCGA-G-GG-AAACACAGAGTTA-CCGGGGACAGTGAACT 2174
||||||||| |||||||||||||| | || ||||||||||||| ||||| ||||||| ||
Sbjct 2178 AATGGAGATGTCTAATACAGTCGAAGAGGGAAACACAGAGTTAACCGGG-ACAGTGAGCT 2236
Query 2175 AACTAGAAGAACATGTAGTGTTTTGGGTTTGGtttttttGTTAAGGATCAATATAAACCG 2234
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2237 AACTAGAAGAACATGTAGTGTTTTTGGTTTGGTTTTTT----AAGGATCAATATAAACCG 2292
Query 2235 TCCGATTGTTTCGGATTGCTTTGATTTTATTACAAGCGAGTTGGCTTCTTGTTTTATTGT 2294
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 2293 TCCGATTGTTTCGGATTGCTTTGATTTTATTACAAGCGAGATGGCTTCTTCTTCTATTGT 2352
Query 2295 TTCGTTGTATGGTGTAATGTTGGGTTTTT-CTTCACCtttttttttttGGTTTTGTGAAT 2353
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
Sbjct 2353 TTCGTTGTATGGTGTAATGTTGGGTTTTTTCTTCAC-TTTTTTTTTTTGGTTTTGTG--T 2409
Query 2354 TTGTGTTTATGATATGTTTTGCAATTTGTAATCATTGGCAAAAATGATAGGGTTTGATTT 2413
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2410 T-GTGTTTATGATATGTTTTGCAATTTGTAATCATTGGCAAAAATGATAGG-TTTGATTT 2467
Query 2414 TATAGTGAAATAAGAAAACCGGGATACAAAAAGAAAAGAGGTTTAGACA-AGAAATGAGT 2472
|||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2468 TATAGTGATATAAGAAAACCGGGATACAAAAAGAAAAGAGGTTTAGACATA-AAATGAGT 2526
Query 2473 TTCTC 2477
|||||
Sbjct 2527 TTCTC 2531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122909010350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5