BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477103
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79380.1 | Symbols: | Ca(2)-dependent phospholipid-binding ... 2422 0.0
> AT1G79380.1 | Symbols: | Ca(2)-dependent phospholipid-binding
protein (Copine) family | chr1:29860491-29863316 FORWARD LENGTH=1820
Length=1820
Score = 2422 bits (1311), Expect = 0.0
Identities = 1636/1779 (92%), Gaps = 78/1779 (4%)
Strand=Plus/Plus
Query 1 ATATATAGTTTCAtttttttCT-GGGTTTCG---GTACTCATGTGGGTTCAGTAAATAAA 56
||||||||||| |||||||||| || ||||| | ||||||||||||||||||||| |
Sbjct 1 ATATATAGTTTAATTTTTTTCTAGGTTTTCGTTCGAACTCATGTGGGTTCAGTAAAT--A 58
Query 57 AATGTTTATAAGTCCCCATCTGGCCGCGTCAAAAATAC-TAGAT---AACAATTAGTGGT 112
|||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 59 AATG-TT-TAAGTCCCCATCTGGCCGCGTCAAAAATACTTAGATAACAACAATTAGTGGT 116
Query 113 TGGCATAGAAAAGTAATGATTGTTGCCGCGTAGAATGAAAATAAT-AAATTAATTAAGAA 171
|| ||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||
Sbjct 117 TGACATAGAAAAGTAATGATTGTTGCCGCGTAGAATGAAATTAATAAAATT-ATAAAGAA 175
Query 172 CAGTGAAGCAATAAA--------T---GT-TT------TAGTCTTCTTAAATATTTCAG- 212
||||||||||||||| | || || ||||||||||||||||| |||
Sbjct 176 CAGTGAAGCAATAAATGTTTCCTTGGCGTCTTGAAGAGTAGTCTTCTTAAATATTCCAGC 235
Query 213 CaaaaaaaaaaaaGATTCTATCCATTATCAAG-G-a-aaaaaaaaTCTGAATTCGAATTC 269
| |||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 236 CCAAAAAAAAAAAGATTCTATCCATTATCAAGAGAAGAAAAAAAATCTGAATTCCAATTC 295
Query 270 ------G-AG--GAAGAAGAAAGGAGATGACTATGGGGAATTTCTTAAAGAGATTTGGAA 320
| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAGAAGAAGAAGAAGAAGAAAGGAGATGACTATGGGGAATTTCTTAAAGAGATTTGGAA 355
Query 321 GTGGAAAAAGCAGAAGCAGAAGCAGTAGAAGTATGACTCTGGGAACAACGTCGTCTCAAT 380
|||| || | ||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 356 GTGG---AA--A-AAGCAGAAGCAGTAGAAATATGACTCTGGGAACGACGTCGTCTCAAT 409
Query 381 CTCATGAACCATCTCCGTCGGCGGATCCTCCAGTCTCCCTTGCCGATAATATCAACGCCG 440
||||||||||||| |||| |||||||| || |||||||||||||||||| |||||||
Sbjct 410 CTCATGAACCATCACCGT---CGGATCCTTCACTCTCCCTTGCCGATAATACCAACGCCA 466
Query 441 CCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCCTCCCTCGACCAGGTATCAAAAG 500
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 467 CCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCTTCCCTCGACCAGGTATCAAAAG 526
Query 501 CTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGA 586
Query 561 GCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCCCTCGGCGAAA 620
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 587 GCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCGCTCGGCGAAA 646
Query 621 CTCCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTCGACG 680
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 647 CTTCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTTGATG 706
Query 681 AAGATAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCACGACGAGGAAGTGT 740
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 707 AAGACAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCATGACGAGGAAGTGT 766
Query 741 TCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACA 826
Query 801 GGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATG 860
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATG 886
Query 861 CTGC-GATTGACATTGTCGAGAAGAACAACGGACAATTCCATGTTCTGGTGATCGTCGCA 919
|||| | | |||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 887 CTGCTG-TCGACATTGTGGAGAAGAACAACGGACAATTCCATGTTCTGGTGATTGTTGCA 945
Query 920 GATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAA 1005
Query 980 TCAACCATCGACGCCATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGT 1039
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ACAACCATCGACGCGATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGT 1065
Query 1040 GTTGGAGACGGGCCATGGGAAGACATGAGGAAGTTTGATGACAAGATCCCTAAGCGTGAA 1099
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1066 GTTGGAGACGGACCATGGGAAGACATGAGGAAGTTCGATGATAAGATCCCTAAGCGTGAA 1125
Query 1100 TTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACCAGAAACTCACCAGAGTCT 1159
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1126 TTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACGAGAAACTCACCAGAGTCT 1185
Query 1160 GCCAAAGAAACTGCCTTTGCTCTTGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCA 1219
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1186 GCCAAAGAAACTGCTTTTGCTCTAGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCA 1245
Query 1220 GCCATCGAACTCCGCTTACTCGGGAAACAGACGGGCACAGCTAAGACAATAGTTCCGAGG 1279
|||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 1246 GCCATCGAACTCCGCTTACTCGGGAAGCAGACGGGCTTAGCGAAGACAATAGTTCCGAGG 1305
Query 1280 CCACCACCAACTCCATACACGCCTCCAACTAATGCTGAACTACCATCAACTGCATCACCT 1339
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CCACCACCAATTCCGTACACACCTCCAACTAATGCTGAACTACCATCAACTGCATCACCT 1365
Query 1340 G-A--AC---AA-A--CCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCT 1390
| | || || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GCATCACCTGAACAAACCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCT 1425
Query 1391 TTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 TTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATC 1485
Query 1451 TGCCGAGTACGGATCACGAGCCGCCTAAGGCTTTACACGTGATCAATGCCCACAAAACTT 1510
|| |||||| ||||||||| ||| |||| ||||||||| ||||||||| |||| || |||
Sbjct 1486 TGTCGAGTAAGGATCACGAACCGGCTAAAGCTTTACACATGATCAATGGCCACGAA-CTT 1544
Query 1511 TTTC-CTGACCACGGCTTTACACGTGATCAATGCCGACATGCCGAGAAACTTTATTTCTG 1569
||| |||||||||||||||||||||||||||||| | | | | || |||||| ||||
Sbjct 1545 TTTTTCTGACCACGGCTTTACACGTGATCAATGCC-A-A--C--A-AA-CTTTATCTCTG 1596
Query 1570 CACATAACAAAAGGCTTGCATATACTATCCTTCTCCTTTGTAGAATCTACAGTTTGGTTT 1629
||||||||||| ||||||| ||| || |||||||||||||||||||| ||||||||
Sbjct 1597 CACATAACAAATCGCTTGCACATAG---CCATCTCCTTTGTAGAATCTACAATTTGGTTT 1653
Query 1630 GCCAAGTGTTTCTGAGAATGTTCCACAATCAGCATGTACCATGTAATTCCGTATCTACTA 1689
||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||
Sbjct 1654 GCCAAGTGTTTCTGACAATGTTCCACAATCAGCGTGTACCATGTAATTCTGTATGTACTG 1713
Query 1690 TAAAACAGTAACTTTGCAAACAAGAATGAAGAAGCAATG 1728
||||||| |||||||||||||||||||||||||||||||
Sbjct 1714 TAAAACATTAACTTTGCAAACAAGAATGAAGAAGCAATG 1752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5