BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477104
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79390.1 | Symbols: | unknown protein; Has 30201 Blast hits... 887 0.0
> AT1G79390.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29863225-29864321
REVERSE LENGTH=666
Length=666
Score = 887 bits (480), Expect = 0.0
Identities = 548/581 (94%), Gaps = 4/581 (1%)
Strand=Plus/Plus
Query 1 GAGAGAGAGATGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 GAGAGAGAGATGTCGTTCATGTATGAGAAGAGCAATACATGGAGATGGCTAGTGATGAAG 96
Query 61 ACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTCTATGTGGTGTGATTCCTGGC 120
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 97 ACGCGAGATTCGAGATCCTTCTTCTTCACGTTCGCTGCTTTATGTGGTGTCATTCCTGGC 156
Query 121 GTTATCGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GTTATTGGCTATGGAGTTATGCAGGTCACCAATTCCAGTAACCCTGAGCTCGAAGCCCGC 216
Query 181 CTCCGTAAATCTGCTCGCCCCGATACCCTCATGATGGGTAAAGTAAACCAAGAGAGGCTA 240
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 217 CTCCGTAAATCTGCTCGCCCAGATACTCTCATGATGGGTAAAGTAAACCAAGAGAGGCTA 276
Query 241 GCTGAGTATCTCGGTGAGTTGAAACAGAAGCAGGACACAAATGACAGATACGTGGCTGCT 300
||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 277 GCTGAATATCTTGGTGAGTTGAAACAGAAGCAGGATACAAACGACAGATACGTTGCTGCT 336
Query 301 CTTAGGGGACAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAGTGCCAAAGCCA 360
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 337 CTTAGGGGAGAGACTCTTACCAGGAAGCCTTATCAAAGAATCCAACCAATGCCAAAGCCA 396
Query 361 GATGACACGGTGACAACCAAAGCTCAGTAAAGGATGAATTCTTTTAAGAGTCAGTGTTAG 420
||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||
Sbjct 397 GATGACACGGTGACAACCAAAACTCAGTAA-GGATGAATTATTTTAAGAGTCAATGTTAG 455
Query 421 TGGATGCCTCTCACTCGAATCTTTTGTCGATGCAAAAATGGCATGTTTACTGGCCGTAAT 480
|| |||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 456 TGAATGCCTCTCACTCGAATCTTTTGTCGATACAAAAATGGCGTGTTTCCTGGCCGTAAT 515
Query 481 Atttttt-tttttGGAACCGGCATCTAGCGACACAGCTTTTGTGCTATGCAAACTGCTGC 539
|| |||| |||||| |||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 516 ATCTTTTGTTTTTGAAACCGGCATCTAGCGACACAACTTTTGTGCTATGCAAACGGCTAC 575
Query 540 AACT-TCAGTCACCTCAAACATTTTGCTATGATAAATAAAA 579
|| | ||| |||| |||||| ||||| |||||| |||||||
Sbjct 576 AA-TGTCAATCACTTCAAACCTTTTGTTATGATGAATAAAA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5