BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477106
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79410.1 | Symbols: AtOCT5, 5-Oct | organic cation/carnitine... 2610 0.0
AT1G16370.1 | Symbols: ATOCT6, OCT6 | organic cation/carnitine ... 802 0.0
> AT1G79410.1 | Symbols: AtOCT5, 5-Oct | organic cation/carnitine
transporter5 | chr1:29867880-29869633 REVERSE LENGTH=1754
Length=1754
Score = 2610 bits (1413), Expect = 0.0
Identities = 1628/1731 (94%), Gaps = 18/1731 (1%)
Strand=Plus/Plus
Query 25 AAAGTAAGCAACCATGGTGGATTCGTTGGCACCATCGTTGACCGCCCACCTTGAAGAAGA 84
||||||||||||||||| ||||||||||||||||| |||| || ||||| ||||||||||
Sbjct 37 AAAGTAAGCAACCATGGCGGATTCGTTGGCACCATTGTTGCCCACCCACATTGAAGAAGA 96
Query 85 TGAAGACAGC-TCTT-AGCCTCTGACTTTCGACAAGATCCTCGA-ACAAAGCTTGTCTGA 141
|||||||| | |||| | |||||||||||||||||||||||||| | |||||||||||||
Sbjct 97 TGAAGACA-CTTCTTCA-CCTCTGACTTTCGACAAGATCCTCGAGA-AAAGCTTGTCTGA 153
Query 142 TTTTGGATTCTCGCAGTTCTTACAGATAGTTCTCGTTGGGCTCGCTCTAACCTTTGACGC 201
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 154 TTTCGGATTCTCGCAGTTCTTACAGATAGTTCTCGTTGGGCTCGCGCTAACCTTTGACTC 213
Query 202 ACAGCAGATATTCATCACCGTCTTCACAGATGCATATCCCACGTGGCACTGTCTCGACCA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 214 TCAGCAGATATTCATCACCGTCTTCACAGATGCATATCCCACGTGGCACTGTCTTGACCA 273
Query 262 CACGATCTGCAATCCGGCAACGACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGAGTG 321
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 274 CACGATCTGCAATCCGGCAACTACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGATTG 333
Query 322 GGACGGTGGTTTCAAGGGTAAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCAAGCTC 381
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 GGACGGTGGTTTCAAAGGTAAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCCAGCTC 393
Query 382 CTTCCGCAGAAGTCTACCAAGTTCAACTTTTTATGTGGGTTCTATCGTTGGAGGAGTCGT 441
||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 394 CTTCCTCAGAAGTCTACCTAGTTCAACTTTTTATGTGGGTTCTATCGTTGGTGGAGTCGT 453
Query 442 CTTGGCTCTGATCCCTGACGGTTCCTTGGGACGGAAGCAACTTCTTTTCTTCTCGAGTTT 501
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 454 TTTGGCTATGATCCCTGACGGTTCCTTGGGACGGAAGCAACTTCTTTTTTTCTCGAGTTT 513
Query 502 TGCAATGTCCCTCACTGGAATCTCCATTTTCTTATCCTCCAACATATGGATCTACTCTTT 561
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 514 CGCAATGTCACTCACTGGAATCTCTATTTTCTTATCCTCCAACATATGGATCTACTCCTT 573
Query 562 CTTAAAATTCGTGATCGGTTTCGCCCGTTCCCAGACTGGGACATACGCGTTAGTTCTGAT 621
|||||| || |||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 574 CTTAAAGTTTGTGATCGGATTCGCGCGTTCTCAGACCGGGACATACGCGTTAGTTCTGAT 633
Query 622 AAGTGAGCGAGTTCCCACCAAATTGAGACCACGAGCTACTATGATTCCGTTTACTCTGTT 681
|||||||||| || ||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 634 AAGTGAGCGAATTTCCACCAAATGGAGACCGCGAGCTACTATGGTTCCGTTTACTCTGTT 693
Query 682 TGTGTTAGGGTTCATGTC-TCTGTCTGGAATCGCTTACCTTGTCCGGCACGCTTCCTGGA 740
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||
Sbjct 694 TGTGTTAGGGTTCATGTCGT-TGTCTGGAATCGCTTACCTTGTCCGACACGCTTCTTGGA 752
Query 741 AAATTCTCTATCTATGCACATCCGTTCCTGCAGGAATCCACAGTATTTTCATCTATTTCT 800
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 753 AAGTTCTCTATCTATGCACATCCATTCCTGCAGGAATCCACAGTATTTTCATCTATTTCT 812
Query 801 TTGCCCTAGAGTCCCCGCGTTGGCTCCATTTGGAAGGTAAGAACGAAGAAGCCATTGAAG 860
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 813 TTGCCCTAGAGTCACCGCGTTGGCTCCATTTGGAAGGGAAGAACAAAGAAGCCATTGAAG 872
Query 861 TGCTCAAAAGGATTTCACCTGCAAACAAAGGTTACTTGGAATCCGTATCTTCTAGGTTAC 920
|||||||| |||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 873 TGCTCAAACGGATTTCACCTGCAAATAGAGGTTACTTGGAATCCGTATCTTCGAGGTTAC 932
Query 921 CTCCAAAAGAAACACTAGACCAAACTTCAAGCTACTCCATCAAGGACTTATTCATTAGAA 980
|||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| ||
Sbjct 933 GTCCAAAAGAAACACTAGAGCAAACTTCAAGCTACTCAATCAAAGACTTGTTCATTATAA 992
Query 981 AATGGGCTTTTCAAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGTCCT 1040
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 993 AATGGGCTTTTCGAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGTCGT 1052
Query 1041 ATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATTTGAGCGAAGCCC 1100
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1053 ATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATATGAGCGAAGCCC 1112
Query 1101 TAAACGCCATGGTGGAGTTACCAACATTTGTTGTTACACCGATATTGCTCGAGAAATTCA 1160
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1113 TAAACGCCATGGTGGAGTTACCAACATTTGTTGTTACACCGATCTTGCTCGAGCAATTCA 1172
Query 1161 GCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCTCTGTT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 GCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCTCTGTT 1232
Query 1221 TCGCCATGAGCCTTTACGGGAGAACAAAAATCGCTTTCGCTCTCGAACTCGGTTCTTTCT 1280
||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1233 TCGTAATGAGCCTTTACGGAAGAACAAAAATCGCTTTTGCTCTCGAACTCGGTTCTTTCT 1292
Query 1281 TCTTCGCTAGGATTGGATTCAATTTAATGGCGGTTTATATGGTTGAGCTATTCCCTACAT 1340
||| |||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||
Sbjct 1293 TCTGCGCTAGGATTGGATTCAATTTAATGGCGATTTATTTGGTTGAGTTATTTCCTACAT 1352
Query 1341 GCGTGAGGAATAGCGCAACAATGATGCTTAGACAAGCGCTTGTGGTTGGAGGAGCTTGTT 1400
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GCGTGAGGAATAGTGCAACAATGATGCTTAGACAAGCGCTTGTGGTTGGAGGAGCTTGTT 1412
Query 1401 GCCCACTCATTGCTTCGCTTGGAAGAAATATTCCGTCACTCTCTTTCGCGGTTTTCGGAT 1460
||||||||||||||||||||||||||||| | |||||||||||||| || ||||||||||
Sbjct 1413 GCCCACTCATTGCTTCGCTTGGAAGAAATGTGCCGTCACTCTCTTTTGCAGTTTTCGGAT 1472
Query 1461 TTGCAATGTCGGGTCTCGGGTTATTCGCGCTGCTTCTTCCTGAGACCAAAGGGTCAAGTC 1520
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1473 TTGCAATGTCGGGTCTCGGGTTATTCGCTTTGCTTCTTCCTGAGACCAAAGGGTTAAGTC 1532
Query 1521 TTTGTGATACAATGGAAGAACAAGAGCAAAGAGACCAAGCCTTGAAGACTAGCCAAAGTT 1580
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1533 TTTGTGATACAATGGAAGAGCAAGAGCAAAGAGACCAAGCCTTGAAGACTAGCCATAGTT 1592
Query 1581 GATGAAAACAGAGTTTTT-GAAAAACCTCGGTTCTTTTATTAAACTTTCGTATAAAACCA 1639
| ||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||
Sbjct 1593 GCTGAAAGCAGAGTTTTTTGAAAAACCTCTGTTCTTTTATTGAACTTTCGTATAAAACC- 1651
Query 1640 TTTACTGTTAAGCTCCGGTTAATCAAGCCATATGTTGATTTTCCGAGTAATTAATATGTG 1699
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1652 T---CTGTTTAGCTCCGGTTAATCAAGCCATATGTTGATTTTCCGAGTAATTAATATGCG 1708
Query 1700 AAACCTACAAAGGCATGTCTTGAATTCTTGATAAACTGAACCATTTCGTTT 1750
|||||||||| ||||||| || || || ||||||||||||||||| |||
Sbjct 1709 AAACCTACAATGGCATGTATT---TT-TT-ATAAACTGAACCATTTCATTT 1754
> AT1G16370.1 | Symbols: ATOCT6, OCT6 | organic cation/carnitine
transporter 6 | chr1:5596694-5598447 FORWARD LENGTH=1754
Length=1754
Score = 802 bits (434), Expect = 0.0
Identities = 1162/1508 (77%), Gaps = 71/1508 (5%)
Strand=Plus/Plus
Query 105 TGACTTTCGACAAGATCCTCGAACAAAGCT-TGTCTGATTTTGGATTCTCGCAGTTCTTA 163
||||||||||||||||| |||||||||| | | || ||||| ||||||| ||| || ||
Sbjct 151 TGACTTTCGACAAGATCGTCGAACAAAG-TCTATCAGATTTCGGATTCTGGCAATTTTTC 209
Query 164 CAGATAGTT--CTCGTTGGGCTCGCTCTAAC-CTTTGACGCACAGCAGATATTCATCACC 220
||||| || |||||||| || ||| | | ||| ||||| ||||||||||||||||||
Sbjct 210 CAGAT--TTCCCTCGTTGGACTAGCT-TTGCTCTTCGACGCTCAGCAGATATTCATCACC 266
Query 221 GTCTTCACAGATGCATATCCCACGTGGCACTGTCTCGACCACACGATCTGCAATCCGGCA 280
|| | ||||||||| |||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 267 GTGTACACAGATGCTTATCCCACGTGGCACTGTCTTAACCACACGATCTGTGATCCTTCA 326
Query 281 ACGACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGAGTGGGACGGTGGTTTCAAGGGT 340
| |||| ||||| ||| |||| | ||||||||||| ||||||||||| | | ||||
Sbjct 327 GCCTCCGACATCTGCAAGCTTCCAAGATCAGCTTGGGAATGGGACGGTGGCTCCCAGGGC 386
Query 341 AAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCAAGCTCCTTCCGCAGAAGTCTACCA 400
||||| |||||||| || || | ||||||||||| ||||| || | |||| || | ||
Sbjct 387 AAATCCGTCATTTCCGAATTTGGCCTCGAGTGCTCGAGCTCTTTACTCAGAGGTATGCCT 446
Query 401 AGTTCAACTTTTTATGTGGGTTCTATCGTTGGA-GGAGTCGTCTTGGCTCTGATCCCTGA 459
||||| |||| || | ||| | || |||||| || | |||| ||| |||| || ||
Sbjct 447 AGTTCTGCTTTCTACATCGGTGCCATTGTTGGAGGGTTTTTTCTT-GCTTTGATTCCAGA 505
Query 460 CGGTTCCTTGGGACGGAAGCAACTTCTTTTCTTCTCGAGTTTTGCAATGTCCCTCACTGG 519
|| ||||||||| || ||| |||| |||| ||||| | ||||||||||| |||||
Sbjct 506 CGATTCCTTGGGTCGCAAGAAACTAGTTTTGTTCTCAACCTTTGCAATGTCAATCACTTC 565
Query 520 AATCTCCATTTTCTTATCCTCCAACATATGGATCTACT-C-TTTCTTAAAATTCGTGATC 577
|||||| || |||| || |||| ||||||| || | | || ||| || || | ||
Sbjct 566 AATCTCTGTTATCTTCTCAACCAATGTATGGATTTA-TACATTCCTT-AAGTTTATCATT 623
Query 578 GG--TTTCGCCCGTTCCCAGA-CTGGGACATACGCGTTAGTTCTGATAAGTGAGCGAGTT 634
|| ||||| || || |||| || || |||||||||| ||||| || |||||||||| |
Sbjct 624 GGATTTTCG--CGATCACAGACCT-GGTCATACGCGTTGGTTCTCATCAGTGAGCGAG-T 679
Query 635 C-CCACCAAATTGAGACC-ACGAGCTACTATGATTCCGTTTACTCTGTTTGTGTTAGGGT 692
| |||||| || |||||| | ||||||| |||||||| ||||| || || || |||||||
Sbjct 680 CTCCACCAGATGGAGACCGA-GAGCTACGATGATTCCATTTACCCTATTCGTTTTAGGGT 738
Query 693 TCATGTC-TCTGTCTGGAATCGCTTACCTTGTC-C-GGCACGCTTCCTGGAAAAT-TCTC 748
| ||||| | ||||||||||||||| ||||| | | | | |||| ||| | || |||
Sbjct 739 TTATGTCGT-TGTCTGGAATCGCTTTCCTTG-CACAAG-ATTCTTCATGG-AGATATCTA 794
Query 749 TATCTATGCACATCCGTTCCTGCAGG-AATCCACAGTATTTTCATCTATTTCTTTGCCCT 807
||||||| |||||| ||||| || || | | || |||| ||| |||| |||| || ||
Sbjct 795 TATCTATACACATCAGTTCCAGC-GGTATTTTACTGTATCTTCCTCTACCTCTTCGCACT 853
Query 808 AGAGTCCCCGCGTTGGCTCCATTTGGAAGGTAAGAACGAAGAAGCCATTGAAGTGCTCA- 866
|| || || || ||||| || || |||| ||| | ||||||||||||| || ||||
Sbjct 854 CGAATCGCCTCGGTGGCTTCACATGCAAGGAAAGGATAAAGAAGCCATTGATGTTCTCAC 913
Query 867 AAAGGATTTCACCTGCAA--ACAAAGGTTACTTGGAATCCGT-ATCTTCTAGGTTACCTC 923
||| ||| ||||| | || | |||| ||| |||||||| || | ||||| |||||| |
Sbjct 914 AAA-GATGTCACC-G-AAGGAAAAAGCTTATTTGGAATCAGTGGT-TTCTAAGTTACCCC 969
Query 924 -CAA--AAGAAACAC-TAGACCAAACTTCAAGC-TACTCCATCAAGGACTTATTCATT-A 977
||| |||||| || | || ||| | ||| | ||||| || |||||||| ||| ||
Sbjct 970 TCAAGCAAGAAA-ACTTTGAACAAGCGCCAA-CTTACTCGATTAAGGACTTCTTC-TTCC 1026
Query 978 GAAAATGGGCTTTTC-AAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATG 1036
||||||||||||||| | || | | |||||||||||||||||||||||||||||||
Sbjct 1027 GAAAATGGGCTTTTCGTAGGA-TTTTAGTTGTTATGATCATAATGTTTGGGTTGGGAATA 1085
Query 1037 TCCTATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATTTGAGCGAA 1096
|| ||||| || ||||| ||||| | |||||||||| | || ||||| || ||||| |||
Sbjct 1086 TCGTATTACGGCGTTCCTTTAGCAGCTAGAGACATAGACGTCAACATCTACTTGAGTGAA 1145
Query 1097 GCCCTAAACGCCAT-GGTGGAGTTACCAACATTTGTTGTTACACCGATATTGCTCGAGAA 1155
||||||| || || ||||||||| || || |||||| | || ||||| || | ||||
Sbjct 1146 ACCCTAAATGC-ATTGGTGGAGTTGCCTACTTTTGTTATCACTCCGATCTTATTGGAGAG 1204
Query 1156 ATTCAGCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCT 1215
||||| ||| ||||||||||| ||||| ||| |||| | || || |||||||| |||||
Sbjct 1205 ATTCAACAGAAGAAGCTCTGTTCTTGTGAATACCTTACTCGGTGGGGCATCAGGGGTGCT 1264
Query 1216 CTGTTTCGC-CATGAGCCTT-TACGGGAGAACAAAAATCGC-TTTCGCTCT-CGAACTCG 1271
|||||||| | | ||| || | ||| | |||| | ||||| ||| || || ||||||||
Sbjct 1265 CTGTTTCGTTC-TCAGCATTCT-CGGCAAAACAGAGATCGCGTTT-GC-CTTCGAACTCG 1320
Query 1272 GTTCTTTCTTCTTCGCTAGGATTGGATTCAAT-TTAATGGCGGTTTATATGGTTGAGCTA 1330
| | ||||||| |||||| || ||||| || ||| |||| |||| ||||||||| |
Sbjct 1321 GAACATTCTTCTGCGCTAGAATCGGATTTAACCTTA-TGGCAGTTTTTATGGTTGAAATG 1379
Query 1331 TTCCCTACATGCGTGAGGAATAGCG-CAACAATGATGCTTAGACAAGCGCTTGTGGTTGG 1389
|| || || || ||||| || || ||||||||||| ||||||| || ||||| |||||
Sbjct 1380 TTTCCAACTTGTGTGAG-AAGCTCGGCAACAATGATGTTTAGACAGGCTCTTGTCGTTGG 1438
Query 1390 AGGAGCTTGTTGCCCACTCATTGCTTCGCTTGGAAGAAATATTCCGTCACTCTC-TTTCG 1448
|||||||||||| || || ||||||||| |||||||| | || || ||| | || ||| |
Sbjct 1439 AGGAGCTTGTTGTCCGCTAATTGCTTCGATTGGAAGATACATACCCTCAGTATCGTTT-G 1497
Query 1449 CGGTTTTCGGATTTGCAATGTCGGGTCTCGGGTTATTCGCGCTGCTTCTTCCTGAGACCA 1508
|| |||| ||| |||||||||| ||| | || | |||| || |||| |||||||| |
Sbjct 1498 CGATTTTTGGAATTGCAATGTCTGGTTTAGGAATGTTCGTTTTGATTCTGCCTGAGACAA 1557
Query 1509 AAGGGTCAAGTCTTTGTGATACAATGGAAGAACAAGAGCAA-AGAGACCAAGCCTTGAAG 1567
|||| | ||||| || ||| | |||||||||||||| || ||||| |||||| | ||
Sbjct 1558 AAGGTTTGAGTCTCTGCGATTCGATGGAAGAACAAGAA-AAGAGAGATCAAGCCGTAAAT 1616
Query 1568 ACTAGCCA 1575
|| |||||
Sbjct 1617 ACCAGCCA 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86545739580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5