BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477110
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79440.1 | Symbols: ALDH5F1, SSADH1, SSADH | aldehyde dehydr... 2830 0.0
> AT1G79440.1 | Symbols: ALDH5F1, SSADH1, SSADH | aldehyde dehydrogenase
5F1 | chr1:29882210-29887412 REVERSE LENGTH=2039
Length=2039
Score = 2830 bits (1532), Expect = 0.0
Identities = 1744/1845 (95%), Gaps = 20/1845 (1%)
Strand=Plus/Plus
Query 1 TCTGATCTCTCTAGTCCTCGTCGTCTTTGTTCGATTGAAGTTTCGCAAGTGGTGATGGTA 60
||||||||| ||||| ||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 84 TCTGATCTCACTAGTGTTCGTCATCTTTGTTCGATTGAAGTTTGGGAAGTGGTGATGGTA 143
Query 61 ATCGGAGCAGCAGCGCGTGTAGCCATCGGCGGTTGTCGAAAGCTCGTCTCGTCACATACC 120
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 144 ATAGGAGCAGCAGCGCGTGTAGCCATCGGCGGTTGTCGAAAGCTCATCTCGTCACATACC 203
Query 121 T--C-CCTCCTCGTCTCTTCTCAGTGTCGCCAGATGAGTATGGACGCACAAAGCGTTTCT 177
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TCCCTCCTCCTCGTCTCTTCTCAGTGTCGCCAGATGAGTATGGACGCACAAAGCGTTTCT 263
Query 178 GAAAAGCTCAGGAGTTCTGGTCTATTGCGAACACAAGGTCTGATTGGGGGCAAGTGGATC 237
|||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||||||| |
Sbjct 264 GAAAAGCTTAGGAGTTCTGGTCTATTACGAACTCAAGGTCTAATTGGAGGCAAGTGGCTT 323
Query 238 GACTCCTATGACAATAAGACAATCAAGGTTAACAATCCAGCAACCGGTGAAATTATAGCT 297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GACTCGTATGACAATAAGACAATCAAGGTTAACAATCCAGCAACCGGTGAAATTATAGCT 383
Query 298 GATGTTGCATGTATGGGAACAAAAGAGACTAATGATGCTATTGCTTCTTCTTATGAAGCA 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 384 GATGTTGCATGTATGGGAACAAAAGAGACAAATGATGCTATTGCTTCTTCTTATGAAGCA 443
Query 358 TTTACATCTTGGAGCAGATTGACTGCTGGAGAGAGGAGCAAAATTTTACGGAGATGGTAC 417
||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 444 TTTACTTCTTGGAGCAGATTGACTGCTGGAGAGAGGAGTAAAGTTTTACGGAGATGGTAT 503
Query 418 GACCTCCTGATTGCACACAAGGAAGAACTTGGACAACTTATAACTTTGGAGCAAGGAAAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GACCTCCTGATTGCACACAAGGAAGAACTTGGACAACTTATAACTTTGGAGCAAGGAAAA 563
Query 478 CCACTAAAGGAAGCCATAGGAGAGGT-GGACTATGGAGCAAGTTTTATTGAGTACTATGC 536
||||| ||||||||||| |||||||| | | ||||| |||||||||||||||||||||||
Sbjct 564 CCACTCAAGGAAGCCATCGGAGAGGTAGCA-TATGGGGCAAGTTTTATTGAGTACTATGC 622
Query 537 AGAGGAGGCAAAACGTGTATATGGTGATATAATTCCTCCTAATTTGTCTGATCGCCGATT 596
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 623 GGAGGAGGCAAAACGTGTATATGGTGATATAATTCCTCCGAATCTGTCTGATCGCCGACT 682
Query 597 GTTGGTTCTAAAACAGCCTGTTGGTGTTGTTGGTGCAATCGCCCCTTGGAACTTCCCCTT 656
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 683 GTTGGTTCTAAAACAGCCTGTCGGTGTTGTTGGTGCAATTACCCCTTGGAACTTCCCCTT 742
Query 657 AGCCATGATTACTCGGAAGGTCGGCCCTGCTCTTGCTTCTGGATGCACGGTGGTTGTTAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AGCCATGATTACTCGGAAGGTCGGCCCTGCTCTTGCTTCTGGATGCACGGTGGTTGTTAA 802
Query 717 ACCATCTGAACTTACACCCCTAACAGCACTTGCTGCGGCTGAGCTGGCACTTCAAGCTGG 776
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 803 ACCATCTGAACTTACGCCCCTAACAGCACTTGCTGCGGCTGAACTTGCACTTCAAGCTGG 862
Query 777 AGTTCCTCCGGTGGCACTTAATGTGGTCATGGGAAATGCTCCTGAAATTGGGGATGCTTT 836
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 AGTTCCTCCGGGGGCACTTAATGTGGTCATGGGAAATGCTCCTGAAATTGGGGATGCTTT 922
Query 837 GCTTTCGAGTCGACAGGTGAGAAAAATCACGTTCACAGGATCAACAGCGGTTGGGAAGAA 896
|||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 923 GCTTACGAGTCCACAGGTGAGAAAAATCACGTTCACGGGATCAACAGCAGTTGGGAAGAA 982
Query 897 GTTAATGGCAGCTGCTGCACCTACCGTCAAGAAGGTTTCTCTAGAACTTGGTGGCAACGC 956
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 983 GTTGATGGCAGCTGCTGCACCTACCGTCAAGAAGGTTTCTCTAGAACTTGGCGGCAACGC 1042
Query 957 ACCCTCCATTGTATTTGATGATGCTGACCTGGATGTAGCAGTAAAAGGAACGCTTGCAGC 1016
|||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1043 ACCCTCTATAGTATTTGATGATGCAGACCTGGATGTAGCTGTAAAAGGAACGCTTGCAGC 1102
Query 1017 CAAATTTAGGAATAGTGGTCAGACATGTGTTTGTGCGAACAGAGTACTTGTGCAAGATGA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GAAATTTAGGAATAGTGGTCAGACATGTGTTTGTGCGAACAGAGTACTTGTGCAAGATGG 1162
Query 1077 TATTTATGATAAATTTGCTGAGGCCTTTTCTGAAGCGGTTCAAAAATTAGAAGTAGGAGA 1136
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 TATCTATGATAAATTTGCTGAGGCCTTTTCTGAAGCGGTTCAAAAATTAGAAGTAGGAGA 1222
Query 1137 TGGCTTTAAGGAGGGGACAACCCAGGGTCCACTTATAAATGATGCAGCAGTGCAAAAGGT 1196
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TGGGTTTAGGGATGGGACAACCCAGGGTCCACTTATAAATGATGCAGCAGTGCAAAAGGT 1282
Query 1197 AGAGTCATTTCAACAAGATGCTGTTTCCAAGGGAGCAAAAATTATTC-TTGGTGGCAAAA 1255
|||| ||||| ||||||||||||||| |||||||||||||| || | ||||||||||||
Sbjct 1283 AGAGACATTTGTACAAGATGCTGTTTCTAAGGGAGCAAAAATCAT-CATTGGTGGCAAAA 1341
Query 1256 GGCACAGTCTAGGGA-GCACTTTCTATGAGCCTACTGTTATCCGTGATGTTTCGAATGAC 1314
||||||||||||||| | |||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1342 GGCACAGTCTAGGGATG-ACTTTCTATGAGCCTACTGTTATCCGCGATGTTTCGGATAAC 1400
Query 1315 ATGCTCATGTCTAAGGAGGAGATTTTTGGACCCGTAGCTCCTCTTATTCGGTTCAAAACC 1374
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1401 ATGATCATGTCTAAGGAGGAGATTTTTGGACCTGTAGCTCCCCTTATTCGGTTCAAAACC 1460
Query 1375 GAGGAGGATGCTATCAGACTCGCTAACGACACAATTGCAGGACTTGCTGCTTATATATTC 1434
|||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 1461 GAGGAGGACGCTATCAGAATTGCTAATGACACAATTGCAGGACTTGCTGCTTATATATTC 1520
Query 1435 ACAAACAGTGTCCAAAGATCCTGGCGTGTCTTTGAAGCACTTGAATACGGACTTGTAGGG 1494
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1521 ACAAACAGTGTCCAAAGATCTTGGCGTGTATTTGAAGCACTTGAATATGGACTTGTAGGG 1580
Query 1495 GTGAACGAAGGACTCATATCAACAGAGGTGGCTCCATTCGGGGGAGTGAAGCAGTCTGGT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 GTGAACGAAGGACTCATATCAACAGAGGTGGCTCCATTCGGGGGAGTGAAGCAGTCTGGT 1640
Query 1555 CTGGGAAGGGAAGGATCCAAGTATGGTATGGACGAATACCTCGAGATCAAATACGTATGC 1614
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1641 CTTGGAAGGGAAGGATCCAAGTATGGTATGGACGAATACCTTGAGATCAAATACGTATGC 1700
Query 1615 TTGGGAGATATGAATAGACACTGATTTGGTTTGTTTAAAAAGCTTTGGAAATTGTAAGTT 1674
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1701 TTGGGAGATATGAATAGACACTGATTTGGTTTGTTTGAAAAGCTTTAGAAATTGTAAGTT 1760
Query 1675 CCTTT-TCCTCCACTCATATCCTTCTAATAAAAGCTTACTGTGGAACATAATAAGGAT-C 1732
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1761 --TTTCTCCTCCACTCGTATCCTTCTAATAAAAGCTTACTGTGGAACATAATAAGGATTC 1818
Query 1733 TGGAGGATACTTGTTAAGAAATAAAGATTTTGGTCTGCGACTAAT-GTTTCAGCATGGtt 1791
||||||||||| ||||||||||||||||| ||||| |||| ||| ||| |||||| ||
Sbjct 1819 -GGAGGATACTTCTTAAGAAATAAAGATTT-GGTCTACGACCAATTGTT--AGCATGATT 1874
Query 1792 ttta-gatcatattttggggtttccattttatttatctttgttta 1835
|||| | | ||| ||||||||||||||||||||||||||||||||
Sbjct 1875 TTTAAG-TAATAATTTGGGGTTTCCATTTTATTTATCTTTGTTTA 1918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92118000075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5