BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477112
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79450.1 | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1... 1681 0.0
> AT1G79450.1 | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:29887692-29890145
FORWARD LENGTH=1433
Length=1433
Score = 1681 bits (910), Expect = 0.0
Identities = 999/1043 (96%), Gaps = 2/1043 (0%)
Strand=Plus/Plus
Query 56 TTCCACCGTCGGAGGAGGCGGATCGGCTGAGCCTTCCGGTGTCAAGAAAACCTCTAAGCG 115
||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||
Sbjct 160 TTCCACCGTCGGAGGAGGCGGATCGTCTGAGATTTCCGGTGTCAAAAAAACCTCCAAGCG 219
Query 116 ACCAAAATATTCTAAGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCC 175
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ACCAAAATATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCC 279
Query 176 AAGATGGGTGATCTTGACATTTCTAGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGAT 235
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 280 AAGATGGGTGATCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGAT 339
Query 236 CTGCTTATTTGCTTCTCAGGGAGTCGTTGAGATTGTTTATCGATATGACACAGACTGCGT 295
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |
Sbjct 340 CTGCTTATTTGCTTCTCAGGGAGTAGTCGAGATTGTTGATCGATATGACACAGACTGTAT 399
Query 296 TCCACCATCTTCTAGAAACAACATGGTCGCTTACATACAAGGTGAAGGAGATAAGATATG 355
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 400 TCCAACATCTTCTAGAAACAACATGGTCGCTTACATACAGGGTGAAGGAGATAAGATCTG 459
Query 356 TAACAGAACAATAGCGGTGACAAAACCTATGAAGCATCCTGTCTATGTATACTACCAACT 415
||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 460 TAAGAGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACT 519
Query 416 TGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAG 579
Query 476 AAGTCCAAGCGAAGAGCGA-GATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAG 534
|||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AAGTCCAAAAGAAGAGC-ATGATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAG 638
Query 535 AACCAATTGTTCCATGTGGTCTTGTTGCTTGGAGTTTGTTTAACGATACTTATAGCTTTT 594
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 639 AACCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTATAGCTTTT 698
Query 595 CAAGAAATAGCCAACAACTTCCTGTGAATAAGAAAGGCATCTCATGGAAGAGTGACAGAG 654
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 699 CAAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAG 758
Query 655 AAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGACAGGAGCGCCAATAGGCG 714
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 759 AAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCG 818
Query 715 GTGGAACTCTCAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGA 774
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGC 878
Query 775 GAACCGCGGCTTTGCCAACATTTAGGAAGCTGTATGGGAAGATTGAGACGGACCTACACG 834
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 879 GAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACG 938
Query 835 CAGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 894
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGC 998
Query 895 AGAAGAAGCTAGTGCTATCAACAACTAGCTGGCTCGGTGGAAGGAACGATTTCCTCGGGA 954
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 999 AGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGA 1058
Query 955 TTGCTTATCTAACAGTAGGCAGCATTTGCTTGTTCTTGGCTGTTACATTTGCCGTACTGT 1014
|||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1059 TTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATTTGCCGTATTGT 1118
Query 1015 ATCTAGTTAAGCCAAGGCAACTCGGAGATCCGTCGTACCTTTCGTGGAACAGAAGTGCTG 1074
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1119 ATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTTTCGTGGAACAGAAGTGCTG 1178
Query 1075 GAGGTTTACAATAATAGATCCCT 1097
|||||||||| ||||||| ||||
Sbjct 1179 GAGGTTTACAGTAATAGAGCCCT 1201
Score = 111 bits (60), Expect = 1e-23
Identities = 84/95 (88%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 1146 TTTGATATCGTTGAAAAC-AA--ttt-ttttttGTCATGGCGTTGTTAAGATACTGGCCA 1201
|||||||| ||||||||| || ||| | ||||||| || |||||||||||||| ||||
Sbjct 1302 TTTGATATTGTTGAAAACAAACGTTTGTGTTTTGTCCTGTTGTTGTTAAGATACTAGCCA 1361
Query 1202 GTAAATGGTGTTTAGAAAATAATGTAAATCAATTA 1236
||||||||||||||||||||||||||||| |||||
Sbjct 1362 GTAAATGGTGTTTAGAAAATAATGTAAATGAATTA 1396
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1091 GATCCCTCCATCGTCAAACGGCTTAGTTTTGGCTTAGCTAACAAAAGAGAAAAAA 1145
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1218 GATCCCTCCATCGTCAAACGGCGTAGTTTTGGCTTAGCTAACAAAAGAGAAAAAA 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5