BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477113
Length=2494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79460.1 | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cy... 4071 0.0
> AT1G79460.1 | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid
cyclases/Protein prenyltransferases superfamily protein | chr1:29890392-29894587
FORWARD LENGTH=2576
Length=2576
Score = 4071 bits (2204), Expect = 0.0
Identities = 2404/2499 (96%), Gaps = 19/2499 (1%)
Strand=Plus/Plus
Query 1 CGTCACTCGTCAAGGCTAATTCCTCGCAAGTTGCTACGACGCCGTTTCGGTTGCTTCTGG 60
||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 CGTCAGTCGTCAAGGCTAATTCGTCGCGAGTTGCTACGACGCCGTTTCGGTTGCTTCTGG 60
Query 61 TTTCTCCATGTCTATCAACCTCCGCTCCTCCGGTTGTTCGTCTCCGATCTCAGCTACTTT 120
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCTTTATGTCTATCAACCTTCGCTCCTCCGGTTGTTCGTCTCCGATCTCAGCTACTTT 120
Query 121 GGAAAAGAGATTGGAAGCGGTAGAT-CAGACAAGAGCTAACAATGTGAGTTTTGAGCAAA 179
|||| ||||||||| | | || | ||||||||||||||||||||||| ||||||||||
Sbjct 121 GGAACGGAGATTGGACTCAGAAG-TACAGACAAGAGCTAACAATGTGAGCTTTGAGCAAA 179
Query 180 CAAAGGACAAGATTAGGAAGATGTTGGATAAAGTGGAGCTTTCTGTTTCGGCCTACGATA 239
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CAAAGGAGAAGATTAGGAAGATGTTGGAGAAAGTGGAGCTTTCTGTTTCGGCCTACGATA 239
Query 240 CTAGTTGGGTAGCAATGGTTCCATCACCGA-CTTCCCAAAATGCTCCACTTTTCCCACAG 298
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 240 CTAGTTGGGTAGCAATGGTTCCATCACCGAGC-TCCCAAAATGCTCCACTTTTCCCACAG 298
Query 299 TGTGTGAAATGGTTATTGGAAT-ATCAACATGAAGATGGATCTTGGGGACTTGATAATCA 357
||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 299 TGTGTGAAATGGTTATTGG-ATAATCAACATGAAGATGGATCTTGGGGACTTGATAACCA 357
Query 358 TGACCATCAATCTCTTAAGAAGGATGTGTTATCATCTACACTGGCTAGTATCCTCGCGTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGACCATCAATCTCTTAAGAAGGATGTGTTATCATCTACACTGGCTAGTATCCTCGCGTT 417
Query 418 AAAGAAGTGGGGAACTGGTGAAAGACAAATAAACAAGGGTCTCCAGTTTATTGAGCTGAA 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAAGAAGTGGGGAATTGGTGAAAGACAAATAAACAAGGGTCTCCAGTTTATTGAGCTGAA 477
Query 478 TTCTGCATCAGTCACTGATGAAACCATACAGAAACCAGCAGGATTTGATATTATATTTCC 537
|||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 478 TTCTGCATTAGTCACTGATGAAACCATACAGAAACCAACAGGGTTTGATATTATATTTCC 537
Query 538 TGGGATGATTGAATATGCTAGAGATTTGAATCTGGCGATTCCATTGGGCTCAGAAGTGGT 597
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 538 TGGGATGATTAAATATGCTAGAGATTTGAATCTGACGATTCCATTGGGCTCAGAAGTGGT 597
Query 598 GGATGCCATGATACGAAAAAGAGATCTGGATCTTAAATGTGATAGTG-AAAGATTTTCAA 656
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 598 GGATGACATGATACGAAAAAGAGATCTGGATCTTAAATGTGATAGTGAAAAG-TTTTCAA 656
Query 657 AGGGAAGAGAAGCATATCTGGCCTATGTTTTAGAGGGAACAAGAAATCTCAAAGATTGGG 716
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 657 AGGGAAGAGAAGCATATCTGGCCTATGTTTTAGAGGGGACAAGAAACCTAAAAGATTGGG 716
Query 717 ATTTGATAGTCAAATACCAAAGGAAAAATGGGTCACTGTTTGATTCTCCAGCCATAACAG 776
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 ATTTGATAGTCAAATATCAAAGGAAAAATGGGTCACTGTTTGATTCTCCAGCCACAACAG 776
Query 777 CAGCTGCATTTACTCAGTTTGGAAATGATGGTTGTCTCCGTTATCTCTGTTCTCTCCTTC 836
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGCTGCTTTTACTCAGTTTGGGAATGATGGTTGTCTCCGTTATCTCTGTTCTCTCCTTC 836
Query 837 AGAAATTTGAGGCTGCAGTTCCTACAGTTTATCCATTTGATCAATATGCACGCCTTAGTT 896
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 AGAAATTCGAGGCTGCAGTTCCTTCAGTTTATCCATTTGATCAATATGCACGCCTTAGTA 896
Query 897 TAATTGTCACCCTTGAAAGCTTAGGAATTGATAGAGATTTCAAAACCGAAATCAAAAGCA 956
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TAATTGTCACTCTTGAAAGCTTAGGAATTGATAGAGATTTCAAAACCGAAATCAAAAGCA 956
Query 957 TATTGGATGAAACCTATAGATATTGGCTTCGTGGGGATGAAGAAATATGTTTGGAGTTGG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 TATTGGATGAAACCTATAGATATTGGCTTCGTGGGGATGAAGAAATATGTTTGGACTTGG 1016
Query 1017 CCACTTGTGCTTTGGCTTTCCGATTATTACTCGCTCATGGCTATGATGTGTCTTACGATC 1076
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1017 CCACTTGTGCTTTGGCTTTTCGATTATTGCTTGCTCATGGCTATGATGTGTCTTACGATC 1076
Query 1077 CGCTAAAACCATTTGCAGAAGAATCTGGTTTTTCTGATACTTTGGAAGGATATGTTAAGA 1136
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 CGCTAAAACCATTTGCAGAAGAATCTGGTTTCTCTGATACTTTGGAAGGATATGTTAAGA 1136
Query 1137 ATACGTTTTCTGTGTTAGAATTATTTAAGGCTGCCCAAAGTTATCCACATGAATCAGCTT 1196
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 ATACGTTTTCTGTGTTAGAATTATTTAAGGCTGCTCAAAGTTATCCACATGAATCAGCTT 1196
Query 1197 TGAAGAAGCAGTGTTCTTGGACTAAGCAATATCTGGAGATGGAATTGTCCAACTGGCTTA 1256
||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 1197 TGAAGAAGCAGTGTTGTTGGACTAAACAATATCTGGAGATGGAATTGTCCAGCTGGGTTA 1256
Query 1257 AGACCTCTGTTCGAGATAAATACCTCAAGAAAGAGGTCGAGGATGCTCTTGCTTTTCCCT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGACCTCTGTTCGAGATAAATACCTCAAGAAAGAGGTCGAGGATGCTCTTGCTTTTCCCT 1316
Query 1317 CCTATGCAAGCCTAGAAAGATCAGATCACAGGAGAAAACTACTCAATGGTTGTGTTTTTT 1376
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1317 CCTATGCAAGCCTAGAAAGATCAGATCACAGGAGAAAAATACTCAATGGTT--------- 1367
Query 1377 CTGCTGTGGAAAACACCAGAGTTACAAAAACCTCATATCGTTTGCACAATATTTGCAGCT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1368 CTGCTGTGGAAAACACCAGAGTTACAAAAACCTCATATCGTTTGCACAATATTTGCACCT 1427
Query 1437 CTGGTATCCTGAAGTTAGCTGTGGATGACTTCAATTTCTGCCAGTCCATACACCGTGAAG 1496
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CTGATATCCTGAAGTTAGCTGTGGATGACTTCAATTTCTGCCAGTCCATACACCGTGAAG 1487
Query 1497 AAATGGAACGTCTTGATAGGTGGATTGTGGAGAATAGATTGCAGGAACTGAAATTTGCCA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AAATGGAACGTCTTGATAGGTGGATTGTGGAGAATAGATTGCAGGAACTGAAATTTGCCA 1547
Query 1557 GACAGAAGCTGGCCTACTGTTATTTCTCTGGGGCTGCAACTTTATTTTCTCCAGAACTAT 1616
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1548 GACAGAAGCTGGCTTACTGTTATTTCTCTGGGGCTGCAACTTTATTTTCTCCTGAACTAT 1607
Query 1617 CTGATGCCCGTATATCGTGGGCCAAAGGTGGAGTACTTACAACGGTTGTAGACGACTTCT 1676
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CTGATGCTCGTATATCGTGGGCCAAAGGTGGAGTACTTACAACGGTTGTAGACGACTTCT 1667
Query 1677 TTGATGTGGGAGGGTCCAAAGAAGAACTGGAAAACCTCATACACTTGGTCGAAAAGTGGG 1736
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TTGATGTTGGAGGGTCCAAAGAAGAACTGGAAAACCTCATACACTTGGTCGAAAAGTGGG 1727
Query 1737 ATTTGAACGGTGTTCCTGAGTACCGCTCAGAACATGTTGAGATCATATTCTCAGTTCTAA 1796
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1728 ATTTGAACGGTGTTCCTGAGTACAGCTCAGAACATGTTGAGATCATATTCTCAGTTCTAA 1787
Query 1797 GGGACACAATTCTCGAAACAGGAGAGAAAGCATTCATCTATCAAGGACG-AAGTGTGACA 1855
||||||| ||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 1788 GGGACACCATTCTCGAAACAGGAGACAAAGCATTCACCTATCAAGGACGCAA-TGTGACA 1846
Query 1856 CACCAGATTGTGAAAATTTGGTTGGATCTGCTCAAGTCTATGTTGAGAGAAGCGGAGTTG 1915
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1847 CACCACATTGTGAAAATTTGGTTGGATCTGCTCAAGTCTATGTTGAGAGAAGCCGAGTGG 1906
Query 1916 TCCAGTGACAAGTCAACACCAAGCTTGGAGGATTACATGGAAAATGCGTACATATCATTT 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TCCAGTGACAAGTCAACACCAAGCTTGGAGGATTACATGGAAAATGCGTACATATCATTT 1966
Query 1976 GCATTAGGACCAATTGTCCTCCCAGCTACCTATCTGATCGGTCCACCACTTCCAGAGAAG 2035
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1967 GCATTAGGACCAATTGTCCTCCCAGCTACCTATCTGATCGGACCTCCACTTCCAGAGAAG 2026
Query 2036 ATAGTCGATAGCCACCAATATAAGAAGCTCTACAAGCTCGTGAGCACTATGGGTCGTCTT 2095
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2027 ACAGTCGATAGCCACCAATATAATCAGCTCTACAAGCTCGTGAGCACTATGGGTCGTCTT 2086
Query 2096 CTAAATGACATACAAGGTTTTAAGAGAGAAAGCGCGGAAGGGAAGCTGAATGCGGTTTCA 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 CTAAATGACATACAAGGTTTTAAGAGAGAAAGCGCGGAAGGGAAGCTGAATGCGGTTTCA 2146
Query 2156 TTGCACATGAGACACGAGAGAGACAATCGCAGCAAAGAAGAAATCATAGAATCGATGAAA 2215
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2147 TTGCACATGAAACACGAGAGAGACAATCGCAGCAAAGAAGTGATCATAGAATCGATGAAA 2206
Query 2216 GGTTTAGCAGAGAGAAAGAGGGAAGAATTGCATAAGCTAGTTTTGGAGGAGAAAGGAAGT 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 GGTTTAGCAGAGAGAAAGAGGGAAGAATTGCATAAGCTAGTTTTGGAGGAGAAAGGAAGT 2266
Query 2276 GCGGTTCCAAGGGAATGCAAAGAAGTGTTCTTGAAAATGAGCAAAGTGTTGAACCTATTT 2335
| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 2267 GTGGTTCCAAGGGAATGCAAAGAAGCGTTCTTGAAAATGAGCAAAGTGTTGAACTTATTT 2326
Query 2336 TACAGGAAGGACGATGGGTTCACATCAGATGATCTGATGAGTCTTGTTAAATCTGTGATC 2395
||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 2327 TACAGGAAGGACGATGGATTCACATCAAATGATCTGATGAGTCTTGTTAAATCAGTGATC 2386
Query 2396 TACGAGCCTGTTACCTTACAGGAAGAATCTTTAACTTGATCCAAGTTGATCTGGGATGTA 2455
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2387 TACGAGCCTGTTAGCTTACAGGAAGAATCTTTAACTTGATCCAAGTTGATCTGGCAGGTA 2446
Query 2456 AACTCAGTATATGAAAATAAGACTTTGGTCTTCTTCTTT 2494
||||||||| |||||||||||||||||||||||||||||
Sbjct 2447 AACTCAGTAAATGAAAATAAGACTTTGGTCTTCTTCTTT 2485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123761848381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5