BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477115
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79480.1 | Symbols: | Carbohydrate-binding X8 domain superf... 2228 0.0
> AT1G79480.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:29897727-29899604 REVERSE LENGTH=1709
Length=1709
Score = 2228 bits (1206), Expect = 0.0
Identities = 1540/1690 (91%), Gaps = 67/1690 (4%)
Strand=Plus/Plus
Query 1 AGTAAAGTGATCTTCTGTGACAACGAAAGTAACCAGCTAAAGTGCGAATCTTTATGAGAA 60
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 50 AGTAAAGTGATCTTCTGTGACAACGAAAGTATGCAACTAAAGTGCGAATCTTTATGAGAA 109
Query 61 ACAGAACCTTATATCCTTCCACAGGTTGCCTTGCAAGGATTCTTTGAGttttttgttttg 120
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 110 ACAGAACCTTATATCCTTCCACAGGTTACCTTGCAAGGATTCTTTGAGGTTTTTGTTTTG 169
Query 121 ttttGGCTTCTACACATGCACAAGACACCCACACAAGatatatatatatatatataGAAA 180
||| | |||||||||||| ||||| ||||| | ||| ||||||||| ||||
Sbjct 170 GTTT-G----TACACATGCACATGACACACACAC-ACATA-CGCGATATATATAAAGAAC 222
Query 181 GAGAGAGCGAAGAGACAAATATTTAAGCTATCTTGGTCCTATTTCTTTGTCTTCTTCCTC 240
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 223 GAGAGAGCGAAGAGACAAATATTTAACCTATCTTGGTCCTGTTTCTTTGTCTTCTTACTC 282
Query 241 TTGAGAGTG--TAGCTAA-TGAAGATTTAGCTTCTCTTTTGGTCTTCATCTTAAAACCAT 297
||||||||| ||||||| || | |||| |||||||||||| ||||||||||||||||
Sbjct 283 TTGAGAGTGTATAGCTAATTG--GTTTTA-TTTCTCTTTTGGTATTCATCTTAAAACCAT 339
Query 298 GGCATCAAATAGAGCCTTCGCAACCATTTGTCTTCTTCTTTGTGTAATTCTCTCAACCAA 357
|| |||| || ||| |||| |||| |||||||||||||||||| | |||||||| ||||
Sbjct 340 GGAATCATATCGAGTCTTCACAACTATTTGTCTTCTTCTTTGTCTCTTTCTCTCAGCCAA 399
Query 358 CTTCTTGACTCATTGTGTAGTAGATGCAAGAAAAAGCGAGGGATTTGAGAGACAGCCAAA 417
|||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 400 CTTCTTCACTCATTATGTAGTAGATGCAAGAAAAAGCGTGGGATTTGAGAGAGAGCCAAA 459
Query 418 GAAGGTGATGATGATCAAAGCATTAAAGCACACATCATTGTTAGAGAAAATGTTGACACA 477
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 460 GAAGGTGATGATGATCAAAGCATTAAAGCACACATCATTGTTACAGAAAATGATGACACA 519
Query 478 ACTCAATCTTGCTCAGCCTTTAGACTATTCTTCATCCTCCAACACTCAACCTTATGGCGT 537
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 520 GCTCAATCTTGCTCAGCCTTTAGACTACTCTTCATCCTCCAACACTCAACCTTATGGCGT 579
Query 538 TAGCACCACTCTCACTCTACCTCCCTATGTTTCACTTCCCCCACTTTCAGTTCCCGGAAA 597
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 580 TAGCACAACTCTCACTCTACCTCCTTATGTTTCACTTCCCCCACTTTCAGTTCCCGGAAA 639
Query 598 TGCCCCTCCTTTCTGCGTTAATCCCCCACTTACTCCTCCTTCCACCTCTTATCCTGGTCT 657
|||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 640 TGCCCCTCCTTTTTGCATTAATCCCCCAAATACTCCTCCTTCCTCCTCTTATCCTGGTCT 699
Query 658 TAGCCCACCTCCCGGCCCAATCACATTACCTAACCCACCCGATTCCTCCTCTAACCCGAA 717
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 700 TAGCCCACCTCCCGGCCCAATCACATTACCTAACCCACCCGACTCCTCCTCTAACCCGAA 759
Query 718 CTCCAACCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGAATCATCCTCTAA 777
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 760 CTCCAACCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGATTCATCCTCTAA 819
Query 778 TCCAAACTCAAACCC--A---A------A------C----CCACCCGAATCATCCTCTAA 816
||||||||||||||| | | | | ||||||||||||||||||||
Sbjct 820 TCCAAACTCAAACCCAAACCCACCCGTTACCGTCCCTAATCCACCCGAATCATCCTCTAA 879
Query 817 CCCAAACCCACC-G---GAT--TCT--T-C---CTCTAACCCAAACCCACCCGAATCATC 864
|||||||||||| | || ||| | | ||| |||||||||||||||||||||||
Sbjct 880 CCCAAACCCACCTGATTCATCCTCTAATCCAAACTCAAACCCAAACCCACCCGAATCATC 939
Query 865 CTCTAATCCAAACCCACCCGTTACCGGCCCTAACCCACCCGAATCATCCTCTAACCCAAA 924
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 940 CTCTAACCCAAACCCACCCGTTACCGTCCCTAACCCACCCGAATCATCCTCTAACCCAAA 999
Query 925 CCCACCAGAGTCATCCTCTAATCCAAACCCACCCATTACCATCCCATACCCGCCTGAATC 984
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1000 CCCACCAGAGTCATCCTCTAATCCAAACCCACCCATTACCATTCCATACCCGCCTGAATC 1059
Query 985 CTCCAGCCCAAACCCGCCAGAAACAGTTCCTAGCCCTCCAGAATCTGGTTATACACCAGG 1044
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTCCAGCCCAAACCCGCCAGAAATAGTTCCTAGCCCTCCAGAATCTGGTTATACACCAGG 1119
Query 1045 GCCTATTTTAGGCCCACCTTACTCTGAACCAGGCCCATCAACACCTACCGGATCAATTCC 1104
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1120 GCCCGTTTTAGGCCCACCTTACTCTGAACCGGGCCCATCAACACCTACCGGATCAATTCC 1179
Query 1105 AAGTCCATCATCGGGGTTTCTTCCCCCGATCGTCTATCCACCGCCTATGGCGCCACCGTC 1164
||||||||||||||||||||||||||| ||||| ||||| || || ||||| ||||||||
Sbjct 1180 AAGTCCATCATCGGGGTTTCTTCCCCCAATCGTTTATCCGCCACCCATGGCACCACCGTC 1239
Query 1165 ACCGAGCGTGACTCCGACCTCGGCTTACTGGTGCGTAGCTAAGCCCTCGGTCCCTGACCC 1224
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 ACCGAGCGTAACTCCGACGTCGGCTTACTGGTGCGTAGCTAAGCCCTCGGTCCCTGACCC 1299
Query 1225 AATTATACAAGAAGCCATGAACTTTGCATGTGGGTCAGGAGCTGATTGTCATTCAATTCA 1284
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AATTATTCAAGAAGCCATGAACTTTGCATGTGGGTCAGGAGCTGATTGTCATTCAATTCA 1359
Query 1285 GCCCAACGGGCCTTGCTTTAAGCCTAATACATTGTGGGCCCATGCTTCGTTCGCCTTCAA 1344
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1360 GCCTAACGGGCCTTGCTTTAAGCCTAATACATTGTGGGCCCATGCTTCGTTCGCCTACAA 1419
Query 1345 TAGCTATTGGCAACGGACCAAAGGTACCGGTGGCTCGTGCACGTTCGGTGGCACCGGCAT 1404
|||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||
Sbjct 1420 TAGCTATTGGCAACGGACCAAAAGTACGGGTGGCTCGTGCACGTTCGGCGGCACTGGCAT 1479
Query 1405 GCTTGTAACCGTTGACCCAAGCTTTAACGGGTGCCATTTTGATTTCTTCTGATGCATGCA 1464
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1480 GCTTGTCACCGTTGATCCAAGCTTTAACGGGTGCCATTTTGATTTCTTCTGATGCATG-A 1538
Query 1465 TGAAGACGAAGACATCTCTCACTTTTCACCTTTTGTTGGATACGAATAATATCAAATAAA 1524
| |||||||||| |||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1539 --A-GACGAAGACAGCTCTCACTTTACA--TTTTGTTGGATACGAATAATATCAAAGAAA 1593
Query 1525 TTTTGATATAATACGTT-AGGTGGGTCGCTCACTTGTAAGTTGTAACCAATTAAAGCTTA 1583
| | ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1594 TCTAGATATAATATGTTTAGGTGGGTCGCTCACTTGTAAGTTGAAACCAATTAAAGCTTA 1653
Query 1584 TAAATACAAATTTCCTTGGGAATGGCATAATTTATAAATGGGGTATGCTAAATACGTATA 1643
| | | | ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1654 T---T-----T--C-TTGGGAATGGCATAATT-ATAAATCT--TATGCTAAATACGTATA 1699
Query 1644 TTGCTTTTGC 1653
||||||||||
Sbjct 1700 TTGCTTTTGC 1709
Score = 206 bits (111), Expect = 7e-52
Identities = 144/159 (91%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 724 CCCCAACCCACCCGAATCATCCTCTAACCCGAACCCACCTGAATCATCCTCTAATCCAAA 783
||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 853 CCCTAATCCACCCGAATCATCCTCTAACCCAAACCCACCTGATTCATCCTCTAATCCAAA 912
Query 784 CTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCGGATTCTTCCTCTAA 843
||||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 913 CTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCCG-TTA--CCG-T-- 966
Query 844 CCCAAACCCACCCGAATCATCCTCTAATCCAAACCCACC 882
||| ||||||||||||||||||||||| |||||||||||
Sbjct 967 CCCTAACCCACCCGAATCATCCTCTAACCCAAACCCACC 1005
Score = 180 bits (97), Expect = 4e-44
Identities = 167/198 (84%), Gaps = 15/198 (8%)
Strand=Plus/Plus
Query 755 AACCCACCTGAATCATCCTCTAATCCAAACTCAAACCCAAACCCACCCGAATCATCCTCT 814
|||||||| || || |||||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 731 AACCCACCCGACTCCTCCTCTAACCCGAACTCCAACCCCAACCCACCCGAATCATCCTCT 790
Query 815 AACCCAAACCCACCGGATTCTTCCTCTAACCCAAACCCACCCGAATCATCCTCTAATCCA 874
||||| |||||||| ||||| |||||||| || || | | ||| || |||
Sbjct 791 AACCCGAACCCACCTGATTCATCCTCTAATCC-AA---A--C---TCA------AACCCA 835
Query 875 AACCCACCCGTTACCGGCCCTAACCCACCCGAATCATCCTCTAACCCAAACCCACCAGAG 934
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 836 AACCCACCCGTTACCGTCCCTAATCCACCCGAATCATCCTCTAACCCAAACCCACCTGAT 895
Query 935 TCATCCTCTAATCCAAAC 952
||||||||||||||||||
Sbjct 896 TCATCCTCTAATCCAAAC 913
Score = 119 bits (64), Expect = 1e-25
Identities = 146/183 (80%), Gaps = 15/183 (8%)
Strand=Plus/Plus
Query 686 CCTAACCCACCCGATTCCTCCTCTAACCCGAACTCCAACCCCAACCCA-CC-CGAAT-CA 742
||||| |||||||| || ||||||||||| ||| || | || | || || | ||| ||
Sbjct 854 CCTAATCCACCCGAATCATCCTCTAACCCAAAC-CC-A-CCTGATTCATCCTCTAATCCA 910
Query 743 TCCTCTAACCCGAACCCACCTGAATCATCCTCTAATCCAAACTCA------A---ACCCA 793
||| ||||| |||||||| |||||||||||||| |||||| || | |||
Sbjct 911 AACTCAAACCCAAACCCACCCGAATCATCCTCTAACCCAAACCCACCCGTTACCGTCCCT 970
Query 794 AACCCACCCGAATCATCCTCTAACCCAAACCCACCGGATTCTTCCTCTAACCCAAACCCA 853
||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 971 AACCCACCCGAATCATCCTCTAACCCAAACCCACCAGAGTCATCCTCTAATCCAAACCCA 1030
Query 854 CCC 856
|||
Sbjct 1031 CCC 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5