BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477117 Length=2650 Score E Sequences producing significant alignments: (Bits) Value AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)... 4165 0.0 > AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29900456-29903189 FORWARD LENGTH=2734 Length=2734 Score = 4165 bits (2255), Expect = 0.0 Identities = 2491/2604 (96%), Gaps = 19/2604 (1%) Strand=Plus/Plus Query 36 GCCATATCTGGAGACCAGGTTCGGATTGATTCCTCAAATTTCAATTCTTCGCATTACATG 95 ||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 76 GCCATCTCTGGAGTCCAGGTTAGAATTGATTCCTCAAATTTCAATTCTTCGCATTACATG 135 Query 96 ACCCTATAATAATTCCTTCTCTACATCTTCGATGATCCGTGGAAGAACCGCGAAAATATT 155 |||| ||||||||| |||||||||||||||||||||||||||||||||||| || | Sbjct 136 ACCC---AATAATTCC--GTCTACATCTTCGATGATCCGTGGAAGAACCGCGAAAGTAAT 190 Query 156 TCCCAGAAATGTCATTTTTACGCTTAGTAGGAGTTCCATTTCTGAGGCT-C--TG----- 207 |||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 191 TCCCAGAAATGTCATTTTTACGCTTAGTAGGAGTTCCATTTCTGAGTCTCCATTGATTTC 250 Query 208 ---G-GTCGAATAAACCCTAGATTAGCCGGTAGTTTCTCCTTCAACATCCGATTATTGAG 263 | ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 251 TCCGAGTCGAATAAACCCTAAATTAGCCGGTAGTTTCTCGTTCAACATCCGATTATTGAG 310 Query 264 CTATTTCACTGTTAGAAATGGCTTTTGTCCCGATTGTTCTGTACCTAGAGACCCTAATTT 323 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 311 CTATTTCACTGTTAGAAATGGCTTTTGTCCCGATTGTTCTGTACCGAGAGACCCTAATTT 370 Query 324 TGTTGGATTGACTACACAAAGTCGGAGTATTTTCAGGAGATTGTGTAGTGAAAAGAGCGG 383 ||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||| || Sbjct 371 TGTTGGATTGACTACACAATGTCGGAGTATTGTCAGGAGGTTTTGTAGTGAAAAGATTGG 430 Query 384 AAGTAGTGAATCTAGTGGCTGGACTGAAGAGGTAGAGTATTTAGATGAGTCGGGTAGTGT 443 |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 431 AAGTAGTGAATCTAGTGGCTGGACAGAGGAGGTTGAGTATTTAGATGAGTCGGGTAGTGT 490 Query 444 ATTACACAGCGGTAAAGGAATAAGATCAGTAGAGCCAGGGCTTGATGACCATGTAATGGT 503 | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 ACTACACAGTGGTAAGGGAATAAGATCAGTAGAGCCAGGGCTTGATGACCATGTAATGGT 550 Query 504 TGGTGGGTTGAAGAAGCCTTACATGAATGCTTCTGCTGTTGCAAAGATTGTTGAAGTTGT 563 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 551 TGGTGGATTGAAGAAGCCTTACATGAATGCTTCTTCTGTTGCAAAGATTGTTGAAGTTGT 610 Query 564 CCAGAGGTGGAAATGGGGACCCGAGTTGGAGACTCAATTGGATAAACTCCAGTTTGTTCC 623 |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 611 TCAGAGGTGGAAATGGGGACCGGAGTTGGAGACTCAGTTAGATAAACTCCAGTTTGTTCC 670 Query 624 CAATATGGTTCACATTACGCAGTCTTTGAAGATTGTTAAAGAGGTTGATGCTGC-CTTGA 682 ||||||||||| |||||||||||||||||||||||||||||||||||||| || | ||| Sbjct 671 GAATATGGTTCATATTACGCAGTCTTTGAAGATTGTTAAAGAGGTTGATGCGGCGC-TGA 729 Query 683 GTTTGTTTAGGTGGGCTAAGAAGCAGCCTTGGTATCTCCCTTCAGATGAATGTTATGTCT 742 || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 730 GTCTGTTTAGGTGGGCTAAGAAGCAGCCTTGGTATCTGCCTTCGGATGAATGTTATGTCG 789 Query 743 TGTTGTTTGATGGGTTGAACCAGGGCAGGGATTTTGTTGGGCTTCAGTCCTTGTTTGAGG 802 ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| Sbjct 790 TGTTGTTTGATGGGTTGAACCAGGGAAGGGATTTTGTTGGGATTCAGTCGTTGTTTGAGG 849 Query 803 AGATGGTTCAAGACTCGAGTAGTCACGGTGATTTGTCGCTTAGTGCGTATAACCAAGTGA 862 |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| Sbjct 850 AGATGGTTCAAGACTCGAGTAGTCACGGTGATTTGTCGTTTAACGCCTATAACCAAGTGA 909 Query 863 TTCAGTATTTGGCTAAAGCTGAGAAACTGGAGGTTGCTTTTTGTTGTTTCAAAAAGGCTC 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 TTCAGTATTTGGCTAAAGCTGAGAAACTGGAGGTTGCTTTTTGTTGTTTCAAAAAGGCTC 969 Query 923 AAGAGTCGGGATGCAAAATTGATACTCAGACATATAATAATCTAATGATGTTGTTTCTGA 982 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 970 AAGAGTCGGGATGCAAAATTGATACGCAGACATATAATAATCTAATGATGTTGTTTCTGA 1029 Query 983 ACAAAGGTCTGCCGTATAAAGCATTTGAGATTTATGAGAGCATGGAGAAAACTGATAGTT 1042 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1030 ACAAAGGTCTCCCGTATAAGGCATTTGAGATTTATGAGAGCATGGAGAAAACTGATAGTT 1089 Query 1043 TGTTGGATGGGTCAACTTATGAGCTGATAATTCCAAGCTTGGCCAAATCCGGCCGTCTTG 1102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1090 TGTTGGATGGGTCAACTTATGAGCTGATAATTCCAAGCTTGGCCAAATCCGGCCGTCTTG 1149 Query 1103 ATGCAGCTTTCAAGCTTTTTCAGCAGATGAAAGAAAGGAAACTTCGACCAAGCTTTAGTG 1162 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1150 ATGCAGCTTTCAAGCTTTTTCAGCAAATGAAAGAAAGGAAACTCCGACCAAGCTTTAGTG 1209 Query 1163 TGTTTTCTTCACTTGTTGATTCAATGGGAAAAGCTGGTCGCTTGGACACATCAATGAAGG 1222 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1210 TGTTTTCTTCGCTTGTTGATTCAATGGGGAAAGCTGGTCGATTGGACACATCAATGAAGG 1269 Query 1223 TTTACATGGAAATGCAGGGATTTGGCCATAGGCCATCAGCAACTATGTTTGTTTCCTTGA 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1270 TTTACATGGAAATGCAGGGATTTGGCCATAGGCCATCAGCAACTATGTTTGTTTCCTTGA 1329 Query 1283 TTGATTCATATGCTAAAGCTGGTAAGCTGGATACTGCTCTTAGGCTTTGGGATGAGATGA 1342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330 TTGATTCATATGCTAAAGCTGGTAAGCTGGATACTGCTCTTAGGCTTTGGGATGAGATGA 1389 Query 1343 AGAAGTCAGGTTTCAGGCCAAACTTTGGATTGTACACAATGATCATCGAATCTCATGCAA 1402 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1390 AGAAGTCAGGTTTCAGGCCAAACTTTGGATTGTACACAATGATCATTGAATCTCATGCAA 1449 Query 1403 AATCAGGAAAGCTTGAAGTAGCAATGACAGTTTTCAAAGACATGGAGAAAGCTGGGTTTT 1462 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1450 AATCAGGAAAGCTTGAAGTAGCAATGACGGTTTTCAAAGACATGGAGAAAGCTGGGTTTT 1509 Query 1463 TACCAACACCTTCCACATATTCGTGTCTATTGGAGATGCATGCTGGATCCGGGCAAGTAG 1522 |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1510 TACCGACACCATCCACATATTCGTGTCTATTGGAGATGCATGCTGGATCTGGGCAAGTAG 1569 Query 1523 ACTCTGCAATGAAGATCTATAACTCCATGACTAATGCTGGGTTAAGGCCTGGCCTGAGCA 1582 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1570 ACTCTGCAATGAAAATCTATAACTCCATGACTAATGCTGGGTTAAGGCCTGGCCTGAGCA 1629 Query 1583 GTTATATCTCACTTCTTACACTTCTGGCCAACAAAAGACTCGTCGATGTTGCCGGGAAGA 1642 ||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1630 GTTATATTTCTCTTCTTACACTTCTGGCCAACAAAAGACTTGTCGATGTTGCTGGGAAGA 1689 Query 1643 TACTACTCGAGATGAAAGCAATGGGGTATTCCGTAGATGTCTGCGCTAGCGATGTTTTGA 1702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1690 TACTACTCGAGATGAAAGCAATGGGGTATTCCGTAGATGTCTGCGCTAGCGATGTTTTGA 1749 Query 1703 TGATATATATCAAAGATGCTTCTGTGGATCTTGCTCTGAAATGGCTTAGGTTCATGGGTT 1762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1750 TGATATATATCAAAGATGCTTCTGTGGATCTTGCTCTGAAATGGCTTAGGTTCATGGGTT 1809 Query 1763 CTTCAGGGATCAAAACAAACAATTTCATCATCAGGCAGTTATTCGAATCATGCATGAAAA 1822 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1810 CTTCAGGGATCAAAACAAACAATTTTATCATCAGGCAGTTATTTGAATCATGCATGAAAA 1869 Query 1823 ATGGTCTATACGATTCAGCTAGGCCTTTGCTCGAGACACTCGTGCATTCTGCTGGAAAAG 1882 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1870 ATGGTCTATACGATTCAGCTAGGCCTTTGCTGGAGACACTCGTGCATTCTGCTGGAAAAG 1929 Query 1883 TTGACCTGGTGCTTTACACTTCGATTCTCGCCCATCTTGTCCGATGCCAAGACGAAGATA 1942 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1930 TTGACTTGGTGCTTTACACTTCGATTCTCGCCCATCTTGTCAGATGCCAAGACGAAGATA 1989 Query 1943 AAGAGAGACAATTGATGTCAATCCTCAGCGCTACCAAGCATAAAGCACATGCCTTTATGT 2002 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1990 AAGAGAGACAATTGATGTCAATCCTCAGCGCTACCAAGCATAAAGCTCATGCCTTTATGT 2049 Query 2003 GTGGTCTCTTCACGGGTCCAGAACAGAGGAAACAACCAGTTCTAACGTTTGTCAGAGAAT 2062 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2050 GTGGTCTCTTCACAGGTCCAGAACAGAGGAAACAACCAGTTCTAACGTTTGTCAGAGAGT 2109 Query 2063 TTTACCAAGGGATTGATTACGAACTCGAAGAAGGAGCTGCTAGATACTTTGTCAATGTCC 2122 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 2110 TTTACCAAGGGATTGATTACGAACTCGAAGAAGGAGCTGCTAGGTACTTTGTGAATGTCC 2169 Query 2123 TTCTCAACTACCTTGTCTTGATGGGTCAAATAAACCGAGCTCGATGTGTCTGGAAAGTAG 2182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2170 TTCTCAACTACCTTGTCTTGATGGGTCAAATAAACCGAGCTCGATGTGTCTGGAAAGTAG 2229 Query 2183 CCTACGAGAACAAACTCTTCCCAAAGGCCATCGTCTTTGACCAACACATTGCTTGGTCTC 2242 | ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 2230 CGTACGAGAACAAACTCTTTCCAAAAGCCATCGTCTTTGATCAACACATTGCTTGGTCTC 2289 Query 2243 TCGATGTGAGAAACTTATCGGTTGGAGCTGCGCTCATAGCAGTGGTTCACACTCTCCACA 2302 ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct 2290 TCGATGTGAGAAACTTATCTGTCGGAGCTGCGCTCATAGCCGTGGTTCACACTCTCCACA 2349 Query 2303 GGTTCAGAAAACGAATGCTTTACTACGGTGTAGTCCCGAGACGTATAAAGCTAGTCACAG 2362 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2350 GGTTCAGAAAACGAATGCTTTACTACGGAGTAGTCCCGAGACGTATAAAGCTAGTCACAG 2409 Query 2363 GACCGACACTGAAGATTGTAATTGCTCAGGTGCTGAGCTCTGTTGAGTCGCCTTTTGAGG 2422 |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 2410 GACCGACATTGAAGATTGTAATTGCTCAAATGCTGAGCTCTGTTGAGTCGCCTTTTGAAG 2469 Query 2423 TCAGCAAAGTTGTCTTGAGAGCACCGGGAGATTTGGTCATGGAGTGGTTCAAGAAACCGA 2482 |||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||| Sbjct 2470 TCAGCAAAGTCGTCTTGAGGGCACCAGGAGAGTTGGTGATGGAGTGGTTCAAGAAACCGA 2529 Query 2483 TAGTGCAACAGTTTCTTCTGAACGAGATCCCGTCTCGGTCTGATATATTGATGCATAAGA 2542 | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 2530 TCGTGCAACAGTTTCTTCTGAACGAGATCCCATCACGGTCTGATATATTGATGCATAAGA 2589 Query 2543 TGAACGTGATGTTTCCAAGCTCGGCTCCTGAGCTTAGATCTATGTCACCTCCCAAACCAC 2602 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2590 TGAACGTGATGTTCCCAAGCTCGGCTCCTGAGCTTAGATCTATGTCACCTCCCAAACCAC 2649 Query 2603 TCATGTCGTCGAAATCGTTCTAAC 2626 ||||||| |||||| ||||||||| Sbjct 2650 TCATGTCATCGAAAGCGTTCTAAC 2673 Score = 67.6 bits (36), Expect = 6e-10 Identities = 36/36 (100%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1 TTCTAAAGCCTCTGGTTTTAGGGTTTAAGCCGACGG 36 |||||||||||||||||||||||||||||||||||| Sbjct 24 TTCTAAAGCCTCTGGTTTTAGGGTTTAAGCCGACGG 59 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 131587891489 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5