BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477117
Length=2650
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)... 4165 0.0
> AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29900456-29903189 FORWARD LENGTH=2734
Length=2734
Score = 4165 bits (2255), Expect = 0.0
Identities = 2491/2604 (96%), Gaps = 19/2604 (1%)
Strand=Plus/Plus
Query 36 GCCATATCTGGAGACCAGGTTCGGATTGATTCCTCAAATTTCAATTCTTCGCATTACATG 95
||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 76 GCCATCTCTGGAGTCCAGGTTAGAATTGATTCCTCAAATTTCAATTCTTCGCATTACATG 135
Query 96 ACCCTATAATAATTCCTTCTCTACATCTTCGATGATCCGTGGAAGAACCGCGAAAATATT 155
|||| ||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 136 ACCC---AATAATTCC--GTCTACATCTTCGATGATCCGTGGAAGAACCGCGAAAGTAAT 190
Query 156 TCCCAGAAATGTCATTTTTACGCTTAGTAGGAGTTCCATTTCTGAGGCT-C--TG----- 207
|||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 191 TCCCAGAAATGTCATTTTTACGCTTAGTAGGAGTTCCATTTCTGAGTCTCCATTGATTTC 250
Query 208 ---G-GTCGAATAAACCCTAGATTAGCCGGTAGTTTCTCCTTCAACATCCGATTATTGAG 263
| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 251 TCCGAGTCGAATAAACCCTAAATTAGCCGGTAGTTTCTCGTTCAACATCCGATTATTGAG 310
Query 264 CTATTTCACTGTTAGAAATGGCTTTTGTCCCGATTGTTCTGTACCTAGAGACCCTAATTT 323
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 CTATTTCACTGTTAGAAATGGCTTTTGTCCCGATTGTTCTGTACCGAGAGACCCTAATTT 370
Query 324 TGTTGGATTGACTACACAAAGTCGGAGTATTTTCAGGAGATTGTGTAGTGAAAAGAGCGG 383
||||||||||||||||||| ||||||||||| ||||||| || ||||||||||||| ||
Sbjct 371 TGTTGGATTGACTACACAATGTCGGAGTATTGTCAGGAGGTTTTGTAGTGAAAAGATTGG 430
Query 384 AAGTAGTGAATCTAGTGGCTGGACTGAAGAGGTAGAGTATTTAGATGAGTCGGGTAGTGT 443
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 431 AAGTAGTGAATCTAGTGGCTGGACAGAGGAGGTTGAGTATTTAGATGAGTCGGGTAGTGT 490
Query 444 ATTACACAGCGGTAAAGGAATAAGATCAGTAGAGCCAGGGCTTGATGACCATGTAATGGT 503
| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 ACTACACAGTGGTAAGGGAATAAGATCAGTAGAGCCAGGGCTTGATGACCATGTAATGGT 550
Query 504 TGGTGGGTTGAAGAAGCCTTACATGAATGCTTCTGCTGTTGCAAAGATTGTTGAAGTTGT 563
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 551 TGGTGGATTGAAGAAGCCTTACATGAATGCTTCTTCTGTTGCAAAGATTGTTGAAGTTGT 610
Query 564 CCAGAGGTGGAAATGGGGACCCGAGTTGGAGACTCAATTGGATAAACTCCAGTTTGTTCC 623
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 611 TCAGAGGTGGAAATGGGGACCGGAGTTGGAGACTCAGTTAGATAAACTCCAGTTTGTTCC 670
Query 624 CAATATGGTTCACATTACGCAGTCTTTGAAGATTGTTAAAGAGGTTGATGCTGC-CTTGA 682
||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 671 GAATATGGTTCATATTACGCAGTCTTTGAAGATTGTTAAAGAGGTTGATGCGGCGC-TGA 729
Query 683 GTTTGTTTAGGTGGGCTAAGAAGCAGCCTTGGTATCTCCCTTCAGATGAATGTTATGTCT 742
|| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 730 GTCTGTTTAGGTGGGCTAAGAAGCAGCCTTGGTATCTGCCTTCGGATGAATGTTATGTCG 789
Query 743 TGTTGTTTGATGGGTTGAACCAGGGCAGGGATTTTGTTGGGCTTCAGTCCTTGTTTGAGG 802
||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 790 TGTTGTTTGATGGGTTGAACCAGGGAAGGGATTTTGTTGGGATTCAGTCGTTGTTTGAGG 849
Query 803 AGATGGTTCAAGACTCGAGTAGTCACGGTGATTTGTCGCTTAGTGCGTATAACCAAGTGA 862
|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 850 AGATGGTTCAAGACTCGAGTAGTCACGGTGATTTGTCGTTTAACGCCTATAACCAAGTGA 909
Query 863 TTCAGTATTTGGCTAAAGCTGAGAAACTGGAGGTTGCTTTTTGTTGTTTCAAAAAGGCTC 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTCAGTATTTGGCTAAAGCTGAGAAACTGGAGGTTGCTTTTTGTTGTTTCAAAAAGGCTC 969
Query 923 AAGAGTCGGGATGCAAAATTGATACTCAGACATATAATAATCTAATGATGTTGTTTCTGA 982
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 970 AAGAGTCGGGATGCAAAATTGATACGCAGACATATAATAATCTAATGATGTTGTTTCTGA 1029
Query 983 ACAAAGGTCTGCCGTATAAAGCATTTGAGATTTATGAGAGCATGGAGAAAACTGATAGTT 1042
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ACAAAGGTCTCCCGTATAAGGCATTTGAGATTTATGAGAGCATGGAGAAAACTGATAGTT 1089
Query 1043 TGTTGGATGGGTCAACTTATGAGCTGATAATTCCAAGCTTGGCCAAATCCGGCCGTCTTG 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGTTGGATGGGTCAACTTATGAGCTGATAATTCCAAGCTTGGCCAAATCCGGCCGTCTTG 1149
Query 1103 ATGCAGCTTTCAAGCTTTTTCAGCAGATGAAAGAAAGGAAACTTCGACCAAGCTTTAGTG 1162
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1150 ATGCAGCTTTCAAGCTTTTTCAGCAAATGAAAGAAAGGAAACTCCGACCAAGCTTTAGTG 1209
Query 1163 TGTTTTCTTCACTTGTTGATTCAATGGGAAAAGCTGGTCGCTTGGACACATCAATGAAGG 1222
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1210 TGTTTTCTTCGCTTGTTGATTCAATGGGGAAAGCTGGTCGATTGGACACATCAATGAAGG 1269
Query 1223 TTTACATGGAAATGCAGGGATTTGGCCATAGGCCATCAGCAACTATGTTTGTTTCCTTGA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TTTACATGGAAATGCAGGGATTTGGCCATAGGCCATCAGCAACTATGTTTGTTTCCTTGA 1329
Query 1283 TTGATTCATATGCTAAAGCTGGTAAGCTGGATACTGCTCTTAGGCTTTGGGATGAGATGA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TTGATTCATATGCTAAAGCTGGTAAGCTGGATACTGCTCTTAGGCTTTGGGATGAGATGA 1389
Query 1343 AGAAGTCAGGTTTCAGGCCAAACTTTGGATTGTACACAATGATCATCGAATCTCATGCAA 1402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1390 AGAAGTCAGGTTTCAGGCCAAACTTTGGATTGTACACAATGATCATTGAATCTCATGCAA 1449
Query 1403 AATCAGGAAAGCTTGAAGTAGCAATGACAGTTTTCAAAGACATGGAGAAAGCTGGGTTTT 1462
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1450 AATCAGGAAAGCTTGAAGTAGCAATGACGGTTTTCAAAGACATGGAGAAAGCTGGGTTTT 1509
Query 1463 TACCAACACCTTCCACATATTCGTGTCTATTGGAGATGCATGCTGGATCCGGGCAAGTAG 1522
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1510 TACCGACACCATCCACATATTCGTGTCTATTGGAGATGCATGCTGGATCTGGGCAAGTAG 1569
Query 1523 ACTCTGCAATGAAGATCTATAACTCCATGACTAATGCTGGGTTAAGGCCTGGCCTGAGCA 1582
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 ACTCTGCAATGAAAATCTATAACTCCATGACTAATGCTGGGTTAAGGCCTGGCCTGAGCA 1629
Query 1583 GTTATATCTCACTTCTTACACTTCTGGCCAACAAAAGACTCGTCGATGTTGCCGGGAAGA 1642
||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1630 GTTATATTTCTCTTCTTACACTTCTGGCCAACAAAAGACTTGTCGATGTTGCTGGGAAGA 1689
Query 1643 TACTACTCGAGATGAAAGCAATGGGGTATTCCGTAGATGTCTGCGCTAGCGATGTTTTGA 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TACTACTCGAGATGAAAGCAATGGGGTATTCCGTAGATGTCTGCGCTAGCGATGTTTTGA 1749
Query 1703 TGATATATATCAAAGATGCTTCTGTGGATCTTGCTCTGAAATGGCTTAGGTTCATGGGTT 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 TGATATATATCAAAGATGCTTCTGTGGATCTTGCTCTGAAATGGCTTAGGTTCATGGGTT 1809
Query 1763 CTTCAGGGATCAAAACAAACAATTTCATCATCAGGCAGTTATTCGAATCATGCATGAAAA 1822
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1810 CTTCAGGGATCAAAACAAACAATTTTATCATCAGGCAGTTATTTGAATCATGCATGAAAA 1869
Query 1823 ATGGTCTATACGATTCAGCTAGGCCTTTGCTCGAGACACTCGTGCATTCTGCTGGAAAAG 1882
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1870 ATGGTCTATACGATTCAGCTAGGCCTTTGCTGGAGACACTCGTGCATTCTGCTGGAAAAG 1929
Query 1883 TTGACCTGGTGCTTTACACTTCGATTCTCGCCCATCTTGTCCGATGCCAAGACGAAGATA 1942
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1930 TTGACTTGGTGCTTTACACTTCGATTCTCGCCCATCTTGTCAGATGCCAAGACGAAGATA 1989
Query 1943 AAGAGAGACAATTGATGTCAATCCTCAGCGCTACCAAGCATAAAGCACATGCCTTTATGT 2002
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1990 AAGAGAGACAATTGATGTCAATCCTCAGCGCTACCAAGCATAAAGCTCATGCCTTTATGT 2049
Query 2003 GTGGTCTCTTCACGGGTCCAGAACAGAGGAAACAACCAGTTCTAACGTTTGTCAGAGAAT 2062
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2050 GTGGTCTCTTCACAGGTCCAGAACAGAGGAAACAACCAGTTCTAACGTTTGTCAGAGAGT 2109
Query 2063 TTTACCAAGGGATTGATTACGAACTCGAAGAAGGAGCTGCTAGATACTTTGTCAATGTCC 2122
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2110 TTTACCAAGGGATTGATTACGAACTCGAAGAAGGAGCTGCTAGGTACTTTGTGAATGTCC 2169
Query 2123 TTCTCAACTACCTTGTCTTGATGGGTCAAATAAACCGAGCTCGATGTGTCTGGAAAGTAG 2182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2170 TTCTCAACTACCTTGTCTTGATGGGTCAAATAAACCGAGCTCGATGTGTCTGGAAAGTAG 2229
Query 2183 CCTACGAGAACAAACTCTTCCCAAAGGCCATCGTCTTTGACCAACACATTGCTTGGTCTC 2242
| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 2230 CGTACGAGAACAAACTCTTTCCAAAAGCCATCGTCTTTGATCAACACATTGCTTGGTCTC 2289
Query 2243 TCGATGTGAGAAACTTATCGGTTGGAGCTGCGCTCATAGCAGTGGTTCACACTCTCCACA 2302
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 2290 TCGATGTGAGAAACTTATCTGTCGGAGCTGCGCTCATAGCCGTGGTTCACACTCTCCACA 2349
Query 2303 GGTTCAGAAAACGAATGCTTTACTACGGTGTAGTCCCGAGACGTATAAAGCTAGTCACAG 2362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2350 GGTTCAGAAAACGAATGCTTTACTACGGAGTAGTCCCGAGACGTATAAAGCTAGTCACAG 2409
Query 2363 GACCGACACTGAAGATTGTAATTGCTCAGGTGCTGAGCTCTGTTGAGTCGCCTTTTGAGG 2422
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2410 GACCGACATTGAAGATTGTAATTGCTCAAATGCTGAGCTCTGTTGAGTCGCCTTTTGAAG 2469
Query 2423 TCAGCAAAGTTGTCTTGAGAGCACCGGGAGATTTGGTCATGGAGTGGTTCAAGAAACCGA 2482
|||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 2470 TCAGCAAAGTCGTCTTGAGGGCACCAGGAGAGTTGGTGATGGAGTGGTTCAAGAAACCGA 2529
Query 2483 TAGTGCAACAGTTTCTTCTGAACGAGATCCCGTCTCGGTCTGATATATTGATGCATAAGA 2542
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2530 TCGTGCAACAGTTTCTTCTGAACGAGATCCCATCACGGTCTGATATATTGATGCATAAGA 2589
Query 2543 TGAACGTGATGTTTCCAAGCTCGGCTCCTGAGCTTAGATCTATGTCACCTCCCAAACCAC 2602
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 TGAACGTGATGTTCCCAAGCTCGGCTCCTGAGCTTAGATCTATGTCACCTCCCAAACCAC 2649
Query 2603 TCATGTCGTCGAAATCGTTCTAAC 2626
||||||| |||||| |||||||||
Sbjct 2650 TCATGTCATCGAAAGCGTTCTAAC 2673
Score = 67.6 bits (36), Expect = 6e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1 TTCTAAAGCCTCTGGTTTTAGGGTTTAAGCCGACGG 36
||||||||||||||||||||||||||||||||||||
Sbjct 24 TTCTAAAGCCTCTGGTTTTAGGGTTTAAGCCGACGG 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131587891489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5