BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477119
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79510.1 | Symbols: | Uncharacterized conserved protein (DU... 1773 0.0
AT1G79500.5 | Symbols: AtkdsA1 | Aldolase-type TIM barrel famil... 697 0.0
AT1G16320.1 | Symbols: | Uncharacterized conserved protein (DU... 636 0.0
> AT1G79510.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr1:29908013-29909332 REVERSE LENGTH=1243
Length=1243
Score = 1773 bits (960), Expect = 0.0
Identities = 1169/1262 (93%), Gaps = 45/1262 (4%)
Strand=Plus/Plus
Query 1 AAAAAACGAACAGCTGTTTATCTTCCAACAAAGCTTCTTCGGGCATCTTCGCTCTTCTCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAAACGAGCAGCTGTTTATCTTCCAACAAAGCTTCTTCGTGCATCTTCGCTCTTCTCA 60
Query 61 ACTCATCCTCCTCTCCCTCTGA---T-TTACTTCGCCTTGAAAAATTAAG--------AC 108
|||| || |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 61 ACTCGTCATCCTCTCCCTCTGATTCTCTTAAGTCGCCTTGAAAAATTAAGACAAAACAAC 120
Query 109 AAGAGAA-AACAAGAGAAGCTCTAAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 167
|| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AACAAAAGAACAAGAGAAGCTCTAAAATCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 180
Query 168 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGACAAACCCATTTCCAGCCA 227
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 181 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCA 240
Query 228 AGCTTTatcatcatcatcatcatcGTCTTCTTCCAATAGCTACGAGTTTGACGAAGATAC 287
||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 241 AGCTTTATCATCATCATCATCATCG------TCCAATAGCTACGAGTTTGAAGAAGATAG 294
Query 288 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 354
Query 348 TAAGACCAAACCGAGTGCGCAGGATAAGTACCAGCAC-G--GCAAAGATGACTTCTACAT 404
|||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 355 TAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACAT 414
Query 405 CAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTTCTCTTCACCAAAGA 464
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 415 CAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGA 474
Query 465 TCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACATTCTC 524
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 475 TCTCAATTACGACATTTACAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTC 534
Query 525 TGGGATTGACAAGTACAAATTGATCTTCTGGGCACTCAGATTTCATGGCAAGATTCTCTT 584
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 535 TGGGATTGACAACTACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTT 594
Query 585 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCAT 654
Query 645 CAGGTGGAATCTTAAAGGTGTACCTCCAGTTCCATGGGAGGCAAAGGGTGAGTTTCAGGG 704
||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 655 CAGGTGGAATCTTAAAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGG 714
Query 705 TACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCGATAACTT 764
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 715 TACTTCTCGCTATAAACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTT 774
Query 765 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCAACTTCTGTTTTGGATTTGGTCACTGC 824
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 775 GGCCTTCAACTTCCCTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGC 834
Query 825 TTGCCCTGCAAGCCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 884
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTGCCCTGCAAGTCCCAATCCAACTTTCATGTTTGGCGCCATGGATTCATACTCATCTTC 894
Query 885 TTGGATTGAGTTCTACAAAGCAGTGCAAAGGACATTGGACAAGCAGGAAGAGCAGATGCT 944
|||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||
Sbjct 895 TTGGATTGAGTTCTACAAAGCAGTGCAAAGGACACTAGACAAGCAAGAAGAGCAAATGCT 954
Query 945 TGTGCAAGACCATTTCGCCCCATGCTCATAGTGCCGTTGGG-CAACACTCAGGTGTATAT 1003
||||||||||||||||| |||||||||||| |||| || || || |||||||||||||||
Sbjct 955 TGTGCAAGACCATTTCGTCCCATGCTCATAATGCCATTAGGTCA-CACTCAGGTGTATAT 1013
Query 1004 ATATA--CTGTTACATTGCAGATA-A-TATA-A-AT--ATGTGTGCAAGCATATGCAGAT 1055
||||| ||||||||||| ||||| | || | | || ||||||||| ||||||||| ||
Sbjct 1014 ATATATACTGTTACATTGAAGATACAATACATATATCTATGTGTGCAGGCATATGCATAT 1073
Query 1056 GAGTAGTTGTGGTTGACTTAGGTTTTCAGATATCAAAGAGGGTAGGGAACCAATAATACT 1115
|||||| |||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 1074 GAGTAGATGTGGTTGACTTAG------A--TATCAAAGAGGGTAGGGAACCAAGAATACT 1125
Query 1116 CATGAGCTTGTACAACTTGCCTATTGAATGTAAACAGAATTCATTACAGTTGTTTTGTTA 1175
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1126 CATGAGCTTGTACAACTTGCCTATTGAATGTAAACAGAATTCCTTACAGTTGTTTTGTTA 1185
Query 1176 TATAAAACACATTGATGATGATTTGTCTTTACGATCAAGCAGAA-TTATATCCCTTGAAA 1234
| ||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||
Sbjct 1186 TGTAAAACACATTGATGAT--TT-GTCTTTACGATCAAGC-GAAATTATATCCCTTGAAA 1241
Query 1235 CC 1236
||
Sbjct 1242 CC 1243
> AT1G79500.5 | Symbols: AtkdsA1 | Aldolase-type TIM barrel family
protein | chr1:29903420-29909437 FORWARD LENGTH=2194
Length=2194
Score = 697 bits (377), Expect = 0.0
Identities = 464/502 (92%), Gaps = 22/502 (4%)
Strand=Plus/Minus
Query 1 AAAAAACGAACAGCTGTTTATCTTCCAACAAAGCTTCTTCGGGCATCTTCGCTCTTCTCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2089 AAAAAACGAGCAGCTGTTTATCTTCCAACAAAGCTTCTTCGTGCATCTTCGCTCTTCTCA 2030
Query 61 ACTCATCCTCCTCTCCCTCTGA---T-TTACTTCGCCTTGAAAAATTAAG--------AC 108
|||| || |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 2029 ACTCGTCATCCTCTCCCTCTGATTCTCTTAAGTCGCCTTGAAAAATTAAGACAAAACAAC 1970
Query 109 AAGAGAA-AACAAGAGAAGCTCTAAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 167
|| | || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1969 AACAAAAGAACAAGAGAAGCTCTAAAATCCAGCAGCTATGGCGTTTCTTCTCCCCAATCT 1910
Query 168 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGACAAACCCATTTCCAGCCA 227
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1909 CTCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAGAAACCCATTTCCAACCA 1850
Query 228 AGCTTTatcatcatcatcatcatcGTCTTCTTCCAATAGCTACGAGTTTGACGAAGATAC 287
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 1849 AGCTTTATCATCATCATCATCATCGTC--C----AATAGCTACGAGTTTGAAGAAGATAG 1796
Query 288 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAGGT 1736
Query 348 TAAGACCAAACCGAGTGCGCAGGATAAGTACCAGCACGGCA--AA-GATGACTTCTACAT 404
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1735 TAAGACCAAACCAAGTGCGCAGGATAAGTACCAGCACGGCAGCAAAGATGACTTCTACAT 1676
Query 405 CAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTTCTCTTCACCAAAGA 464
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1675 CAATCTCGGTTTAGCTGTACGTACCCTTCGCGAAGATTTGCCTCTCCTCTTCACCAAAGA 1616
Query 465 TCTCAATTACGACATTTACAGG 486
||||||||||||||||||||||
Sbjct 1615 TCTCAATTACGACATTTACAGG 1594
Score = 562 bits (304), Expect = 3e-159
Identities = 337/353 (95%), Gaps = 1/353 (0%)
Strand=Plus/Minus
Query 479 TTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACATTCTCTGGGATTGACAAGT 538
||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 1523 TTT-CAGGGATGATATAACATTAGTGGATCCAATGAACACGTTCTCTGGGATTGACAACT 1465
Query 539 ACAAATTGATCTTCTGGGCACTCAGATTTCATGGCAAGATTCTCTTCAGGGATATCTCAC 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1464 ACAAATTGATCTTCTGGGCACTTAGATTTCATGGCAAGATTCTCTTCAGGGATATCTCAC 1405
Query 599 TTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGATTCTCATCAGGTGGAATCTTA 1345
Query 659 AAGGTGTACCTCCAGTTCCATGGGAGGCAAAGGGTGAGTTTCAGGGTACTTCTCGCTATA 718
||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1344 AAGGTGTACCTAGAGTCCCATGGGAGGCAAAGGGAGAGTTTCAGGGTACTTCTCGCTATA 1285
Query 719 AACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTCGATAACTTGGCCTTCAACTTCC 778
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1284 AACTCGACCGAAATGGCAAAATCTATGAGCATAAGGTCGATAACTTGGCCTTCAACTTCC 1225
Query 779 CTCACCAGCTCAAACCTGCAACTTCTGTTTTGGATTTGGTCACTGCTTGCCCT 831
||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 1224 CTCACCAGCTCAAACCTGCCACTTCTGTTTTGGATATGGTCACCGCTTGCCCT 1172
> AT1G16320.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr1:5580855-5582143 FORWARD LENGTH=1129
Length=1129
Score = 636 bits (344), Expect = 0.0
Identities = 680/834 (82%), Gaps = 55/834 (7%)
Strand=Plus/Plus
Query 115 AAAC-AAGA-GAAGCTCT-AAACTCCAGCAGCTATGGCGTTTCTTCTCCCCAATC--TC- 168
|||| |||| | |||||| ||| ||||||||| ||||| |||||||| | |||| ||
Sbjct 66 AAACAAAGACG-AGCTCTCAAA-TCCAGCAGCAATGGCTTTTCTTCTTTCTAATCTATCA 123
Query 169 TCTCCTTCTTTCCTTCTTCCGACCGGAAAATCACTCAAAGAC--AAACCCATTTCCAGCC 226
||||| || ||| ||||| |||||||||| || |||| | |||||||||| ||| |
Sbjct 124 TCTCCGTCAATCCATCTTCAAACCGGAAAAT-ACCCAAA-CCTTAAACCCATTTTCAGTC 181
Query 227 AAGCTTTatcatcatcatcatcatcGTCTTCTTCCAATAGCTACGAGTTTG-ACGAAGAT 285
| ||| || | ||| || |||||||| | ||||||||| |||| | |||||
Sbjct 182 -A-----ATC-TC-T-ATCGTCTTCGTCTTC-T--GTTAGCTACGAATTTGTA-GAAGAG 228
Query 286 ACTCTCTCTCCACTTTCTCTCTTTAGCGTCCAGGCTCCTCCTCCTGTTCGAGGTGCGCAG 345
| ||| ||| |||| ||||| || ||| |||| | | |||||||| || || ||||
Sbjct 229 AATCTATCTACACTCTCTCTATTGAGCATCCA-G-T-CTCCTCCTCTTAAAGACACGCAA 285
Query 346 GTTAAGACCAA-AC-CGAGTGCGCAGGATAAG--T-ACCAGCACGGCAAAGATGACTTCT 400
||| ||| ||| || | ||| |||| |||||| | | | |||| || |||||| ||||
Sbjct 286 GTTCAGA-CAAGACAC-AGTTCGCAAGATAAGCATAATAACCACGACAGAGATGAATTCT 343
Query 401 ACATCAATCTCGGTTTAGCTGTACGTACCCTTCGTGAAGATTTGCCTCTT-CTCTTCACC 459
| |||||||| ||| | ||||| ||||| |||||||||||||||||| || ||||||||
Sbjct 344 ATATCAATCTTGGTGTCGCTGTCCGTACACTTCGTGAAGATTTGCCT-TTGCTCTTCACT 402
Query 460 AAAGATCTCAATTACGACATTTACAGGGATGATATAACCTTTGTGGATCCAATGAACACA 519
| |||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 403 AGAGATCTTAATTACGACATCTACAGGGATGATATAACATTTGTGGATCCGATGAACACA 462
Query 520 TTCTCTGGGATTGACAAGTACAA-ATTGATCTTCTGGGCACTCAGATTTCATGGCAAGAT 578
||| ||||||| ||||| ||||| ||| |||||||||||||||||||||||||| |||||
Sbjct 463 TTCACTGGGATGGACAACTACAAGATT-ATCTTCTGGGCACTCAGATTTCATGGGAAGAT 521
Query 579 -TCTCTTCAGGGATATCTCACTTGAGATCTTCAGGGTTTGGCAACCATCAGAGAACATGA 637
| | ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 522 AT-TGTTCAGAGATATCTCACTTGAGATCTTCAGAGTATGGCAACCATCAGAGAACATGA 580
Query 638 TTCTCATCAGGTGGAATCTTAAAGGTGTACCTCCAGTTCCATGGGAGGC-AAAGGGTGAG 696
||||||||||||||||||| || ||||| ||| |||||||||||| || ||||| |||
Sbjct 581 TTCTCATCAGGTGGAATCTCAAGGGTGTGCCTAGAGTTCCATGGGAAGCTAAAGGA-GAG 639
Query 697 TTTCAGGGTACTTCTCGCTATAAACTTGACCGAAACGGCAAAATCTATGAGCATAAAGTC 756
||||| || |||||||| |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 640 TTTCAAGGCACTTCTCGGTATAAACTCGACCGTAATGGCAAAATCTATGAGCATAAAGTC 699
Query 757 GATAACTTGGCCTTCAACTTCCCTCACCAGCTCAAACCTGCAACTTCTGTTTTGGATTTG 816
||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 700 GATAACTTGGCCTTCAATTTCCCTCAACAGCTCAAACCTGCAGCTTCGGTTTTGGATTTG 759
Query 817 GTCACTGCTTGCCCTGCAAGCC--CC-AATCCAACTTTCATGTTTG-GCGCCA-TGGATT 871
|| ||||||| |||||||||| || ||||| || ||| | ||| | || |||| |
Sbjct 760 GTGACTGCTTCCCCTGCAAGCAGTCCTAATCCTACGTTCTT-TTTCAGT-CCTGTGGACT 817
Query 872 CATACTCATCTTCTTGGATTGAGTTCTA-CAAAGCAGTGCAAAGG-ACATTGGA 923
| || |||||||| ||| || |||| || ||| || ||| | ||| ||||||||
Sbjct 818 CTTATTCATCTTCATGGGTTAAGTTTTATCAA-GCGGTG-AGAGGGACATTGGA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5