BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477120
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79520.2 | Symbols: | Cation efflux family protein | chr1:2... 1757 0.0
> AT1G79520.2 | Symbols: | Cation efflux family protein | chr1:29912251-29914615
REVERSE LENGTH=1463
Length=1463
Score = 1757 bits (951), Expect = 0.0
Identities = 1047/1092 (96%), Gaps = 12/1092 (1%)
Strand=Plus/Plus
Query 478 AAAAGGAACGCAAAGTCTCTGAGTACTACAAACAGCAAGAGAAGCTCCTGGAGGGTTTCA 537
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 330 AAAAGGAACGCAAAGTCTCAGAGTACTACAAACAGCAAGAGAAGCTTCTGGAGGGTTTCA 389
Query 538 ATGAGATGGAGTCAATTAACGAGACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAAC 597
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 390 ATGAGATGGAGACAATTAACGAAACTGGTTTTGTATCTGGAGCTCCAACTGAGGAAGAAC 449
Query 598 TGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCTGTTCACATCTCAAACGCAGCAAACCTTG 657
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 450 TGAAGAAGCTTGCAAAGAGCGAGAGGCTTGCAGTTCACATCTCAAACGCAGCAAACCTTG 509
Query 658 TGCTTTTTGTAGCAAAGGTTTATGCTTCTGTGGAGAGTAGATCTATGGCTGTGATTGCTT 717
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 510 TGCTTTTTGTAGCAAAAGTTTATGCTTCTGTGGAGAGTAGGTCTATGGCTGTCATTGCTT 569
Query 718 CCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACCGCTAATG 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 570 CCACTTTGGACTCTCTCTTAGATCTCTTGTCTGGATTTATTCTATGGTTTACTGCTAATG 629
Query 778 CCATGAGAACACCAAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGG 837
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CCATGAGAACACCTAACAATTTTCGCTATCCAATTGGAAAACGACGGATGCAACCTGTGG 689
Query 838 GAATCATTGTGTTTGCATCCGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAA 897
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GAATCATTGTGTTTGCATCTGTGATGGCAACTCTTGGACTACAAGTGATACTAGAGTCAA 749
Query 898 CCAGGCTACTTGTTTCCAAGAAGGGTTCTCATATGAGTAGCACTGAGGAAAAATGGATGA 957
| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 750 CTAGGCTACTTGTTTCCAAGAATGGTTCTCATATGAGTAGCACCGAGGAAAAATGGATGA 809
Query 958 TTGGAATAATGGCTTCTGCTACAGTCGTCAAGTTTCTGCTCATGCTTTATTGCAGGAGTT 1017
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 810 TTGGAATAATGGCTTCAGCTACAGTCGTCAAGTTTCTGCTCATGCTTTACTGCAGGAGTT 869
Query 1018 TCCAGAACGAAATTGTTAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAACT 1077
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 870 TCCAGAACGAAATTGTCAGGGCCTATGCACAAGATCACCTCTTTGATGTTATCACCAATT 929
Query 1078 CAGTCGGTTTAGCAACAGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTG 1137
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CAGTCGGTTTAGCAACCGCTGTTTTAGCTGTAAAATTCTACTGGTGGATTGATCCCTCTG 989
Query 1138 GGGCTATATTAATTGCTCTGTACACAATCAGCACATGGGCAAGAACGGTTCTAGAGAATG 1197
|||||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 990 GGGCTATACTAATTGCCCTGTATACAATCAGCACATGGGCAAGAACAGTTCTAGAGAATG 1049
Query 1198 TCCATTCACTGATAGGACGTTCAGCACCACCGGATTTCTTGGCTAAACTAACGTTCTTGA 1257
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1050 TCCATTCACTGATAGGACGCTCAGCACCACCAGATTTCTTGGCGAAACTAACGTTCTTGA 1109
Query 1258 TATGGAACCATCACGAGAAGATAAAACACATTGACACAGTGAGAGCCTACACGTTTGGGT 1317
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1110 TTTGGAACCATCACGAGAAGATAAAACACATAGACACAGTGAGAGCCTACACGTTTGGGT 1169
Query 1318 CACACTACTTTGTGGAAGTAGACATTGTGTTGCCAGAGAACATGAGGCTGCATGAAGCTC 1377
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1170 CACACTACTTTGTGGAAGTTGACATTGTGTTGCCAGAGGACATGAGGCTGCATGAAGCTC 1229
Query 1378 ACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 ACAACATAGGAGAAACTCTTCAGGAGAAGCTGGAGCAACTCTCTGAGGTTGAGAGAGCTT 1289
Query 1438 TTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGAATAT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 TTGTCCATATTGACTTTGAGTTTACTCATCGTCCAGAACACAAATGCAAGGTTTGAATAT 1349
Query 1498 CCCAATAGGTTAATGGAT--A-A-----TAAATTAAGCAGG-TAGTCTTTTGATTTCTCT 1548
| | |||||||||||||| | | ||||||||||||| | |||| |||||||||
Sbjct 1350 CACGATAGGTTAATGGATCCAGAGGAAATAAATTAAGCAGGAT-GTCTC--GATTTCTCT 1406
Query 1549 AGAGTTTTTGTT 1560
||||||||||||
Sbjct 1407 AGAGTTTTTGTT 1418
Score = 436 bits (236), Expect = 2e-121
Identities = 274/291 (94%), Gaps = 7/291 (2%)
Strand=Plus/Plus
Query 1 AAAGTTCCAAAAAAGGGGCCAAAAAATAAGCAACAAGTTTTGATTCTCTCGTAACTTCCC 60
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3 AAAGTTCCAAAAAAGAGGCCAAAAAATAAGCAACAACTTTTGATTCTCTCGTAACTTCCC 62
Query 61 CCA-AAAAT---C--AGC-AGAGCGAGAGCGATCGGTTATGGCGGCGACGGAGCATCACG 113
||| ||||| | ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 63 CCACAAAATCAGCAGAGCGAGAGCGAGAGCGATCGGTTATGGCGGCGACGGAGCATCGCG 122
Query 114 GCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACGAAGACGATTCGCCAC 173
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 GCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCAATTGACCAAGACGATTCGCCAC 182
Query 174 CATCTTCATGGCGTCTCAGCCTCGACACATTTCGCCTCCCTTCTTCTTCTCCGTTATCAT 233
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 183 CATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTCCCTTCTTCTTCACCGTTATCAT 242
Query 234 CTGGCCGCCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGA 284
| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTATCTCCGGACTCCGA 293
Score = 313 bits (169), Expect = 4e-84
Identities = 185/193 (96%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 285 ATGGCGGCGACGGAGCATCACGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCA 344
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ATGGCGGCGACGGAGCATCGCGGCCTCAGTGGAGGAGACTACAATGTCGACCTTTTACCA 160
Query 345 ATTGACGAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTTCGCCTC 404
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 161 ATTGACCAAGACGATTCGCCACCATCTTCATGGCGTCTCAGCCTCGACACATTCCGTCTC 220
Query 405 CCTTCTTCTTCTCCGTTATCATCTGGCCGCCACAACGGCCGTACTCGCTTGTCTCGTTAT 464
||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 221 CCTTCTTCTTCACCGTTATCATCAGGACGTCACAACGGCCGTACTCGCTTGTCTCGTTAT 280
Query 465 CTCCGGACTCCGA 477
|||||||||||||
Sbjct 281 CTCCGGACTCCGA 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5