BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477121
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79530.1 | Symbols: GAPCP-1 | glyceraldehyde-3-phosphate deh... 2697 0.0
AT1G16300.1 | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate deh... 1303 0.0
AT1G79529.1 | Symbols: | other RNA | chr1:29915662-29916410 FO... 285 1e-75
> AT1G79530.1 | Symbols: GAPCP-1 | glyceraldehyde-3-phosphate dehydrogenase
of plastid 1 | chr1:29915902-29919234 REVERSE LENGTH=1745
Length=1745
Score = 2697 bits (1460), Expect = 0.0
Identities = 1672/1767 (95%), Gaps = 43/1767 (2%)
Strand=Plus/Plus
Query 1 AACATATTGGATTCTTCACGTTTGTTTGTTTATAATTTT-GGTTGGCTCTACACCTACTC 59
||||| ||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 4 AACATTTTGGATTCTTCAC----GTTTGTTTAT-ATTTTGGGTTGGCTCTACACCTACTC 58
Query 60 TCAGAAGTCAGAAGCCAAGCAAA-GGTGTTTTAGGGTTTTTGACCGCGAGCGAGATCTCT 118
|||||||||| |||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 59 TCAGAAGTCATAAGCCAAGCAAAGGGGGTTTTAGGGTTTTTGACCGCGAGCCAGATCTCT 118
Query 119 CTC-TTTGTTTCT-CCAGTTCCGAATCAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGC 176
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTCTTTTGTTTCTCCCACTTCCGAATCAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGC 178
Query 177 CGCCTCCACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTC 236
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTCCTACACGGTTGCCGCTCCTCGCCCTGACTTTTTCTCGTCGCCGGCGTCTGATCATTC 238
Query 237 TAAGGTGTCCTCAAGTCTTGGATTTAGTCGCAACCTGAAACCATCGAGATTTTCTTCTGG 296
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 239 TAAGGTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGG 298
Query 297 GATATCTTCGTCTATACAAAAAGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGC 356
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 GATATCTTCATCTCTACAAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGC 358
Query 357 TACAGAAATGCCATCTGCACTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGAT 416
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TACAGAAGTGCCATCTGCAGTTCGAAGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGAT 418
Query 417 CAACGGTTTTGGTCGGATTGGAAGGCTGGTCCTCCGCATTGCAACATCCAGGGATGACAT 476
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 419 CAACGGTTTTGGTCGGATTGGAAGGTTGGTCCTCCGCATTGCAACATCAAGGGATGATAT 478
Query 477 TGATGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAA 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAGGTTGTAGCAGTGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAA 538
Query 537 GTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTATGATTCTACTCATGGAAATTTCAAGGGAAGCATCAATGTCATTGATGATTCTACTTT 598
Query 597 GGAGATCAACGGGCAGAAGGTCAATGTTGTCAGCAAGAGAGATCCAGCTGAGATACCATG 656
||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 599 GGAGATCAATGGGAAGAAGGTCAATGTTGTCAGCAAGAGAGATCCATCTGAGATCCCATG 658
Query 657 GGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCTTGTCAAA 716
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 GGCTGATCTTGGAGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACCCTGTCAAA 718
Query 717 GGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCAGCTGA 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 GGCTGCATCCCATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCTGCTGA 778
Query 777 CGCACCTATGTTTGTTGTTGGGGTAAATGAGAAGACATACCAACCAAACATGGATATAGT 836
||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||
Sbjct 779 CGCACCTATGTTTGTTGTTGGAGTAAACGAGCACACATACCAACCAAACATGGATATAGT 838
Query 837 CTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCGAAGGTGGTGCATGAGGA 896
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 CTCCAATGCAAGTTGTACCACCAATTGTCTTGCCCCTCTTGCCAAGGTGGTGCATGAGGA 898
Query 897 ATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAAC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTTGGTATTCTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAAC 958
Query 957 TGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCAT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGTTGATGGGCCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCAT 1018
Query 1017 TCCTAGCTCAACCGGCGCCGCTAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAA 1076
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCCTAGCTCAACCGGCGCCGCGAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAA 1078
Query 1077 ACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACTTACGGGAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTG 1138
Query 1137 TCGACTTGAGAAGGGTGCCTCTTATGAAGATGTTAAAGCAGCCATTAAGTATGCCTCAGA 1196
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 1139 TCGACTTGAGAAGGGTGCCTCTTACGAAGATGTTAAGGCAGCCATTAAGCATGCCTCAGA 1198
Query 1197 AGGACCTCTTAAAGGCATTCTCGGGTATACAGATGAAGATGTCGTCTCCAACGATTTCGT 1256
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1199 AGGACCTCTTAAAGGCATTCTCGGGTACACAGATGAAGATGTCGTCTCCAATGATTTCGT 1258
Query 1257 CGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGGATTGGATTGAGCAAGTCCTT 1316
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 CGGTGATTCAAGGTCCAGTATCTTTGACGCCAATGCTGGTATTGGATTGAGCAAGTCCTT 1318
Query 1317 TGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCT 1378
Query 1377 TATAGAGCACATGGCTTTGGTAGCAGCCAGCCACTAAATACACAC-C-AGTTCTTGCAGA 1434
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1379 TATAGAGCACATGGCTTTGGTAGCTGCCAGCCACTAAATACACACACCAGTTCTTGCAGA 1438
Query 1435 AGCTTGAGACTTTCTGCTTTTTGCGTAACCTGCTCTACAAAGCCGGATTGGATTTGTTCG 1494
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1439 AGCTTGAGTCTTTCTGCTTTTTGCGTAACCTGCTCTACAAAGCCGGTTTGGATTTGTTCG 1498
Query 1495 GTTCAATTAGGTGC---T-----AGGTGTTTTGAGAA-ATTTGGTTTGAATCACGAGCCT 1545
|||||||||||||| | ||||||||||| || |||||| ||||||| |||||||
Sbjct 1499 GTTCAATTAGGTGCCACTGTGCTAGGTGTTTTGA-AATATTTGGCTTGAATCTCGAGCCT 1557
Query 1546 AT-CTTCTATTTTTGTTTTGTTCCAGTATGAGCAACTACGGAAACTAGATTGGGTCCAAA 1604
| || ||||||||||| ||||||||||| |||||| | | | |||| ||||||||
Sbjct 1558 TTACT-CTATTTTTGTTCTGTTCCAGTATCAGCAAC--C--A---T-GATTTGGTCCAAA 1608
Query 1605 AGACT-AAAAACTGTGCGACTTACATCTATCAAATAAGGGGCTAAACTTGTTGTACTTTA 1663
||||| |||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 1609 AGACTGAAAAACTGTGCGACTTACATCTATGAA-TAAGGGGCTAAGCTAGTTGTACTTTA 1667
Query 1664 CCAAAAATAGCTTACCAGTATAAGCAACAATTGTTTGGA-AGCTTCTTGATAATGAGTGC 1722
|||||||||||||||||||||||||||| ||||||| | |||||||||| | | |
Sbjct 1668 CCAAAAATAGCTTACCAGTATAAGCAAC----GTTTGGATA-CTTCTTGATA--GCG--C 1718
Query 1723 ATCGTTAGCTTTGCCCGTGCTTATGAC 1749
|||||||||||||||||||||||||||
Sbjct 1719 ATCGTTAGCTTTGCCCGTGCTTATGAC 1745
> AT1G16300.1 | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate dehydrogenase
of plastid 2 | chr1:5574310-5577622 FORWARD LENGTH=1602
Length=1602
Score = 1303 bits (705), Expect = 0.0
Identities = 1101/1289 (85%), Gaps = 40/1289 (3%)
Strand=Plus/Plus
Query 143 CAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGCCGCCTCCACGGTTGCCGCTCCTCGCC 202
|||||||||| |||||||||||||||||||||||| || | | | || ||||||||
Sbjct 122 CAATGGCCTTATCTTCTCTCCTCAGATCTGCCGCC-ACTTC-C-GCCGCAGCTCCTCG-T 177
Query 203 CT-GA-CTTTTTCTCGTCGCCGGCGT-CTGATCATTCTAAGGTGTCCTCAAGTCTTGGAT 259
| || |||| || | ||| | ||| | |||||||| |||| | |||||||||||||
Sbjct 178 GTCGAGCTTTATC-CATCGTCATCGTAC-AATCATTCTCAGGTCACGTCAAGTCTTGGAT 235
Query 260 TTAGTCGCAACCTGAAAC-CATCGAGATTTTCTTCTGGGATATCTTC-GTCT-ATA-C-A 314
| |||| | |||| | | | || ||| || |||| || | || | || | | | |
Sbjct 236 TCAGTCATAGCCTG-ACCTCGTCTAGA--TT-TTCT-GG-T-GCTGCAGTTTCA-ACCGG 287
Query 315 AAAAGGCAATGC-AAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAATGC-CAT-C 371
|||| |||||| ||| || || ||||||||||||||||| ||||| | || || | | |
Sbjct 288 AAAATACAATGCGAAG-AGGGTTCAACCCATCAAGGCCACAGCTAC-GGAA-GCACCTCC 344
Query 372 TGCACTTCGA-AGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTC 430
||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGCTGTTC-ATAGGTCAAGGAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTC 403
Query 431 GGATTGGAAGGCTGGTCCTCCGCATTGCAACATCCAGGGATGACATTGATGTTGTAGCAG 490
| |||||||| ||||||||||||| ||||| | |||||||| || || ||||||||||
Sbjct 404 GAATTGGAAGATTGGTCCTCCGCATCGCAACCTTTAGGGATGATATCGAGGTTGTAGCAG 463
Query 491 TGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTC 550
| || || |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 464 TCAACGATCCATTCATAGATGCCAAGTACATGGCTTACATGTTCAAGTATGATTCTACTC 523
Query 551 ATGGAAATTTCAAGGGAAGC-ATCAATGTCATTGATGATTCTACTTTGGAGATCAACGGG 609
||||||||| ||| |||| | |||||||| ||||||||||| |||||||||||||| ||
Sbjct 524 ATGGAAATTACAAAGGAA-CTATCAATGTAATTGATGATTCAACTTTGGAGATCAA-TGG 581
Query 610 CAGA-AGGTCAATGTTGTCAGCAAGAGAGATCCAGCTGAGATACCATGGGCTGATCTTGG 668
| | | ||||| ||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 582 AAAACAAGTCAAAGTTGTCAGCAAGAGAGACCCAGCTGAAATCCCGTGGGCTGATCTTGG 641
Query 669 AGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACC-TT-GTCAAAGGCTGCATCC 726
|||||| ||||||||||||||||| || |||||||||||| || | | || ||| ||||
Sbjct 642 AGCTGAGTATGTTGTTGAGTCTTCAGGGGTATTCACCACCGTTGGAC-AA-GCTTCATCA 699
Query 727 CATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCAGCTGACGCACCTATG 786
||||||||||| ||||| ||||| || || |||||||| |||||||| ||||| || |||
Sbjct 700 CATTTGAAGGGTGGTGCTAAGAAGGTCATCATTTCTGCACCTTCAGCGGACGCGCCCATG 759
Query 787 TTTGTTGTTGGGGTAAATGAGAAGACATACCAACCAAACATGGATATAGTCTCCAATGCA 846
||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 760 TTTGTTGTTGGAGTAAATGAAAAGACATACCTGCCTAACATGGATATAGTCTCCAATGCA 819
Query 847 AGTTGTACCACCAATTGTCTTGCCCCTCTTGCGAAGGTGGTGCATGAGGAATTTGGTATT 906
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 820 AGTTGTACCACCAATTGTCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATT 879
Query 907 CTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAACTGTTGATGGG 966
|||||||||||||||||||| |||||||| || |||||||||||||||||||| || ||
Sbjct 880 CTTGAAGGCTTGATGACAACAGTCCACGCGACCACAGCTACTCAGAAAACTGTGGACGGC 939
Query 967 CCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCATTCCTAGCTCA 1026
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 940 CCATCAATGAAGGACTGGAGAGGAGGCCGAGGCGCAAGTCAAAACATCATTCCTAGCTCA 999
Query 1027 ACCGGCGCCGCTAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAAACTTACGGGA 1086
|| ||||| || |||||||| ||||| || ||||| ||||| ||||| ||||| || |||
Sbjct 1000 ACAGGCGCTGCAAAGGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGA 1059
Query 1087 ATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAG 1146
|||||||||||||| |||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct 1060 ATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGACTTGAG 1119
Query 1147 AAGGGTGCCTCTTATGAAGATGTTAAAGCAGCCATTAAGTATGCCTCAGAAGGACCTCTT 1206
|||| ||| || |||||||| || || |||||||| |||| ||| ||||||||||| |||
Sbjct 1120 AAGGATGCATCGTATGAAGACGTCAAGGCAGCCATAAAGTTTGCATCAGAAGGACCACTT 1179
Query 1207 AAAGGCATTCTCGGGTATACAGATGAAGATGTCGTCTCCAACGATTT-CGTCGGTGATTC 1265
| |||||||| || |||||||| |||||||||||||| || ||||| | | || |||||
Sbjct 1180 AGGGGCATTCTTGGATATACAGAAGAAGATGTCGTCTCTAATGATTTTCTT-GGAGATTC 1238
Query 1266 AAGGTCCAGTATCTTTGACGCCAATGCTGGGATTGGATTGAGCAAGTCCTTTGTGAAACT 1325
|||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 1239 AAGGTCAAGTATCTTTGATGCTAATGCTGGGATTGGATTAAGCAAGTCCTTCATGAAACT 1298
Query 1326 TGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCTTATAGAGCA 1385
|||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1299 TGTCTCCTGGTATGACAACGAATGGGGTTACAGCAACCGAGTCCTTGACCTGATAGAACA 1358
Query 1386 CATGGCTTTGGTAGCAGCCAGCCACTAAA 1414
|||||| || || |||||||||| |||||
Sbjct 1359 CATGGCGTTAGTTGCAGCCAGCCGCTAAA 1387
> AT1G79529.1 | Symbols: | other RNA | chr1:29915662-29916410
FORWARD LENGTH=561
Length=561
Score = 285 bits (154), Expect = 1e-75
Identities = 201/221 (91%), Gaps = 14/221 (6%)
Strand=Plus/Minus
Query 1353 TTACAGCAACCGAGTTCTTGACCTTATAGAGCACATGGCTTTGGTAGCAGCCAGCCACTA 1412
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 443 TTACAGCAACCGAGTTCTTGACCTTATAGAGCACATGGCTTTGGTAGCTGCCAGCCACTA 384
Query 1413 AATACACAC-C-AGTTCTTGCAGAAGCTTGAGACTTTCTGCTTTTTGCGTAACCTGCTCT 1470
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 383 AATACACACACCAGTTCTTGCAGAAGCTTGAGTCTTTCTGCTTTTTGCGTAACCTGCTCT 324
Query 1471 ACAAAGCCGGATTGGATTTGTTCGGTTCAATTAGGTGC---T-----AGGTGTTTTGAGA 1522
|||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 323 ACAAAGCCGGTTTGGATTTGTTCGGTTCAATTAGGTGCCACTGTGCTAGGTGTTTTGA-A 265
Query 1523 A-ATTTGGTTTGAATCACGAGCCTAT-CTTCTATTTTTGTT 1561
| |||||| ||||||| ||||||| | || |||||||||||
Sbjct 264 ATATTTGGCTTGAATCTCGAGCCTTTACT-CTATTTTTGTT 225
Score = 76.8 bits (41), Expect = 6e-13
Identities = 41/41 (100%), Gaps = 0/41 (0%)
Strand=Plus/Minus
Query 1318 GTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAG 1358
|||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTGAAACTTGTCTCTTGGTACGACAACGAATGGGGTTACAG 521
Score = 63.9 bits (34), Expect = 5e-09
Identities = 61/72 (85%), Gaps = 10/72 (14%)
Strand=Plus/Minus
Query 1679 CAGTATAAGCAACAATTGTTTGGA-AGCTTCTTGATAATGAGTGCATCGTTAGCTTTGCC 1737
||||||||||||| ||||||| | ||||||| || || |||||||||||||||||
Sbjct 224 CAGTATAAGCAAC----GTTTGGATA-CTTCTTG---AT-AGCGCATCGTTAGCTTTGCC 174
Query 1738 CGTGCTTATGAC 1749
||||||||||||
Sbjct 173 CGTGCTTATGAC 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5