BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477131
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79590.1 | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 |... 1487 0.0
> AT1G79590.1 | Symbols: SYP52, ATSYP52 | syntaxin of plants 52
| chr1:29946296-29948565 FORWARD LENGTH=1139
Length=1139
Score = 1487 bits (805), Expect = 0.0
Identities = 938/1002 (94%), Gaps = 10/1002 (1%)
Strand=Plus/Plus
Query 32 ACAATCACAAATCGCGGTGCATAGAATTTAAAGGGTCAATGGCGTCTTCTTCGGATGCAT 91
||||||||||||||||||||||| | | ||||||||||||||| |||||||||||| |||
Sbjct 139 ACAATCACAAATCGCGGTGCATATAGTCTAAAGGGTCAATGGCCTCTTCTTCGGATCCAT 198
Query 92 GGATGAGAGAGTACAATGAGGCTTTGAAACTTTCTGAGGATATTAATGGCATGATGTCTG 151
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 199 GGATGAGAGAGTACAATGAGGCTTTGAAACTCTCTGAGGATATTAATGGCATGATGTCTG 258
Query 152 AAAGGAATGCGTCAGGGTTAACCGGGCCTGATGCTCAACGTCGTGCCTCTGCAATTCGAA 211
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AAAGGAATGCCTCCGGGTTAACCGGGCCTGATGCTCAACGTCGTGCCTCTGCAATTCGAA 318
Query 212 GGAAGATCACCATTTTGGGGACCCGATTAGACAGTTTACAATCCCTTCTTGTGAAAGTTC 271
| |||||||||||||||||||| |||||||||||| | |||||||||||||| || ||||
Sbjct 319 GAAAGATCACCATTTTGGGGACTCGATTAGACAGTCTGCAATCCCTTCTTGTCAAGGTTC 378
Query 272 CTGGGAAGCAGCATGTTTCGGAGAAAGAGATGAATCGTCGCAAGGATATGGTTGGGAATT 331
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTGGCAAGCAGCATGTTTCGGAGAAAGAGATGAATCGTCGCAAGGATATGGTTGGGAATT 438
Query 332 TGAGATCAAAAACAAATCAGGTGGCCTCTGCTTTGAATATGTCAAACTTTGCAAACAGAG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGAGATCAAAAACAAATCAGGTGGCCTCTGCTTTGAATATGTCAAACTTTGCAAACAGAG 498
Query 392 ACAGCTTGCTTGGGCCAGATATAAAGCCAGATGATGCGATCAACAGAGTCTCGGGCATGG 451
|||||||| |||| ||||| ||||||| ||||||||||| || |||||||| |||||||
Sbjct 499 ACAGCTTGTTTGGAACAGATTTAAAGCCGGATGATGCGATAAATAGAGTCTCTGGCATGG 558
Query 452 ACAACCAAGGAATTGTTGGATTTCAACGGCAAGTTATGAGAGAACAAGACGAGGGACTTG 511
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 559 ACAACCAAGGAATTGTTGTATTTCAACGGCAAGTTATGAGAGAACAAGACGAGGGACTTG 618
Query 512 AGAAGTTGGAGGAAACAGTTATGAGTACTAAACACATTGCTCTCGCTGTCAACGAGGAGC 571
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 619 AGAAGTTGGAGGAAACAGTCATGAGTACCAAACACATTGCTCTCGCTGTTAACGAGGAGC 678
Query 572 TCACTCTGCAGACAAGGCTAATTGATGACTTAGATTACCAGGTGGATGTCACTGACTCTC 631
|||| |||||||||||||| |||||||||||||||||| | |||||| ||||||||||||
Sbjct 679 TCACCCTGCAGACAAGGCTTATTGATGACTTAGATTACGATGTGGATATCACTGACTCTC 738
Query 632 GCTTACGGCGTGTGCAAAAGAGCCTTGCCGTGATGAACAAGAGCATGAAAAGTGGTTGCT 691
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 739 GCTTACGGCGTGTTCAAAAGAGCCTTGCCTTGATGAACAAGAGCATGAAAAGTGGTTGCT 798
Query 692 CATGCATGTCGATGCTCTTGTCTGTGCTTGGAATCGTTGGTCTTGCTCTTGTGATTTGGC 751
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 799 CATGCATGTCTATGCTCTTGTCTGTGCTTGGAATCGTTGGTCTTGCTCTTGTAATTTGGC 858
Query 752 TGCTGGTTAAGTACCTGTAGTGCCAACAAGGCGGCAACTTGTGAAAGCTCATCCTGTTCT 811
||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||
Sbjct 859 TGCTGGTTAAGTACCTGTAATGCCAATGTGGTGGCAACTTGTGAAAGCTCATCCTTTTCT 918
Query 812 CTCAGCCTCTCCTCTGTGCTTAATGGTTGTTTTCTATTCCTTCTTTCGATTGATTCTTCG 871
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 919 CTCAGCCTATCCTCTGTGCTTAATGGTTGTTTTCTATTCCTTCTATCGATTGATTCGT-G 977
Query 872 TCTGTGAGGCAAAGAAGAATACCACTGCTTGTAAGAAACCTTAAGAAGTACATAATCTGT 931
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 978 TCTGTGAGGCAAAGAAGAATACCACTGCGTGTAAGAAACCCTCAGAAGTACATAATCTGT 1037
Query 932 ATTACCTTCGTATTGTCCACGAATTGTAAAGTAAGTT----T--GTCTATATATGGTATG 985
||||||||||||| |||||||||||||| |||||| | ||||||||||||||||
Sbjct 1038 ATTACCTTCGTATCAACCACGAATTGTAAACTAAGTTGACATTTGTCTATATATGGTATG 1097
Query 986 GCTCCTACTT--T-CAATTAAGAGAACTAGTGGCTAGGACAA 1024
|||||||||| | |||| |||||||||||||||| ||||||
Sbjct 1098 GCTCCTACTTGGTTCAATAAAGAGAACTAGTGGCTTGGACAA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5