BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477133
Length=2351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79600.1 | Symbols: | Protein kinase superfamily protein | ... 3696 0.0
> AT1G79600.1 | Symbols: | Protein kinase superfamily protein
| chr1:29949925-29952690 REVERSE LENGTH=2490
Length=2490
Score = 3696 bits (2001), Expect = 0.0
Identities = 2258/2377 (95%), Gaps = 37/2377 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTTCATGGCTGTTACTGGCTGGGCAATCACAATCTGAAttctttcttatttc-t- 58
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 70 TCTTCTTTCATGGCTGTTACTGGCTGGGCAATCACAATCTGAATTCTTTCTTCCTCCTTG 129
Query 59 tctttct--tctctctctGA-TTTT-----CGC--GGAGTTACACGATGAGCCTCGTGGT 108
||| ||| | | || | || |||| | | | ||||||||||||| || |||||
Sbjct 130 TCTCTCTGAT-TTTCGCCGAGTTTTGGGGGCTCTTGTTGTTACACGATGAGTCTGGTGGT 188
Query 109 TGGTCAGTCGCTGGGTTTAACACTAGTCGGTGATGGTCTTTCGTTACGCAGTTCGAAAAG 168
||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 189 TGGTCAGTCTCTGGGTTTAACTCTAGTCGGTGATGGTCTTTCGTTACGCAATTCCAAAAT 248
Query 169 AAATGTCGGAAAATCCAAGTTTTTCTCAGTCAATCGGAGGAGATTGGCGCGTGCGGCTCT 228
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 249 AAATGTCGGAAAATCAAAGTTTTTCTCGGTAAATCGGAGGAGATTGGCGCGTGCGGCCCT 308
Query 229 GGTTCAAGCTAGGCCTAAGGAAGATGGA---GCGGC-A-TCGAGACCGA-C-T----A-C 276
||| |||||||||||||||||||| ||| ||||| | || || | | | | |
Sbjct 309 GGTACAAGCTAGGCCTAAGGAAGACGGAGCGGCGGCAAGTCCTTCCCCATCGTCGAGACC 368
Query 277 GGCGTCCGTTGTGCAGTACCGACGAGCTGATCTCGCGGATGATCTTCAAGCTGAGGCACG 336
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 GGCGTCAGTTGTGCAGTACCGACGAGCTGATCTCGCGGATGATCTTCAAGCCGAGGCACG 428
Query 337 AGCTTTGGGTCGTGCTGTTGATGCTTCTATTTATTCTCCGGAGCTCATCGCCAGGAAACA 396
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 429 AGCTTTGGGTCGTGCTATTGATGCTTCTATTTACTCTCCGGAGCTCATCGCCAGGAAACA 488
Query 397 TGGCTCTCAGCCTTTCAAGGCTTTGCGGAGAAGTTTGGAGATATTGGGAGCTCTGGGTGG 456
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 489 TGGCTCTCAGCCTTTCAAGGCTTTGCGGAGAAGTTTGGAGATATTGGGAGCTTTGGGTGG 548
Query 457 CTTCGCTTTGAAATTGGGGATTGATCAGAAGCAAGGCAACTTAGAGAAGAACATGAAGAA 516
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 549 TTTCGCTTTGAAATTGGGGATTGACCAGAAGCAGGGCAACTTAGAGAAGAACATGAAGAA 608
Query 517 GAGAGCTGGT-GAGCTCCGTCGGATTTTCACTCGTCTCGGACCTACTTTTGTTAAATTGG 575
|||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 609 GAGAGC-AATCGAGCTCCGGCGGATCTTCACTCGTCTCGGACCTACTTTTGTTAAATTGG 667
Query 576 GTCAAGGTTTGTCCACCCGACCCGACCTCTGTCCACCCGATTACCTTGAAGAACTTGCAG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GTCAAGGTTTGTCCACCCGACCCGACCTCTGTCCACCCGATTACCTTGAAGAACTTGCAG 727
Query 636 AGCTTCAGGATGCTTTGCCAACCTTCCCTGATGCAGAGGCATTCGCTTGCATTGAGAGAG 695
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 728 AGCTTCAGGATGCTTTGCCAACCTTCCCTGATGCAGAGGCATTTGCTTGCATTGAGAGAG 787
Query 696 ACTTGGATTTGTCTCTAGAGTCCATTTTCTCGTCTGTATCCCCTGAGCCAATCGCAGCAG 755
| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 788 AGTTGGATTTGTCGCTAGAGACCATTTTCTCGTCTGTATCTCCTGAGCCAATCGCAGCAG 847
Query 756 CTAGTCTTGGCCAGGTTTACAAAGCTCAGCTGAGGTATTCAGGTCAGGTTGTTGCTGTCA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTAGTCTTGGCCAGGTTTACAAAGCTCAGCTGAGGTATTCAGGTCAGGTTGTTGCTGTCA 907
Query 816 AAGTTCAACGCCCTGGGATCGAAGAAGCCATTGGCCTTGATTTTTACCTTATTAGAGGAG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AAGTTCAACGCCCTGGGATCGAAGAAGCCATTGGCCTTGATTTTTACCTTATTAGAGGAG 967
Query 876 TTGGAAAACTCATTAACAAGTATGTAGACTTCATCACTACTGATGTCCTTACCCTTATCG 935
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 968 TTGGGAAACTCATTAACAAGTATGTAGACTTCATCACTACCGATGTCCTTACCCTTATCG 1027
Query 936 ATGAGTTTGCCTGCAGAGTTTATCAGGAGCTAAACTATGTCCAGGAGGCCCAAAATGCCA 995
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 ATGAGTTCGCCTGCAGAGTTTATCAGGAGCTAAACTATGTCCAGGAGGCCCAAAATGCCA 1087
Query 996 GAAGGTTTAAAAAACTT-TATGCTGATAAAGCAGATGTTCTTGTTCCTGATATATTCTGG 1054
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1088 GAAGGTTTAAAAAA-TTGTATGCAGATAAAGCAGATGTTCTTGTGCCTGATATATTCTGG 1146
Query 1055 GATTACACGAGCCGCAAGGTTCTAACAATGGAATGGGTTGAGGGAACTAAACTGAATGAG 1114
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GATTACACGAGCCGCAAGGTGCTAACAATGGAATGGGTTGAGGGAACTAAACTGAATGAG 1206
Query 1115 CAACTTGCCATTGAGAGTCAGGGATTGAAGGTTCTGGATCTCGTGAATACAGGAATCCAA 1174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CAACTTGCCATTGAGAGTCAGGGATTGAAGGTTCTGGATCTCGTGAATACAGGAATCCAG 1266
Query 1175 TGTAGCCTAAGACAACTCTTGGAGTATGGCTTTTTCCATGCTGACCCTCATCCTGGTAAT 1234
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TGTAGCCTAAGGCAACTCTTGGAGTATGGCTTTTTCCATGCTGACCCTCATCCTGGTAAT 1326
Query 1235 CTCTTGGCAACACCTGATGGAAAACTTGCCTTTCTAGACTTTGGCATGATGAGTGAGACA 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CTCTTGGCAACACCTGATGGAAAACTTGCCTTTCTAGACTTTGGCATGATGAGTGAGACA 1386
Query 1295 CCAGAGGAAGCTAGATTTGCAATCATAGGTCATGTTGTCCATTTAGTGAACCGAGATTAT 1354
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1387 CCAGAGGAAGCTAGATTTGCTATCATAGGCCATGTTGTCCATTTAGTGAACCGAGATTAT 1446
Query 1355 GAAGCCATGGCCCGAGATTACTATGCTCTGAAGTTCTTGTCTCCTGATGTGGATGTTACT 1414
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1447 GAAGCCATGGCACGAGATTACTATGCTCTGAAGTTCTTGTCCCCTGATGTGGATGTTACT 1506
Query 1415 CCCATCGTACCAGCTCTCAGAGACTTCTTTGACGATGCACTTAATTATACAGTGAGCGAG 1474
|| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1507 CCTATCATACCAGCTCTCAGAGACTTCTTTGACGATGCACTTAATTATACCGTGAGCGAG 1566
Query 1475 CTCAATTTCAAAACTTTGGTTGATGGTCTAGGTGCTGTCTTCTACCAGTATCCATTCAAT 1534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1567 CTCAATTTCAAAACTTTGGTTGATGGTCTAGGTGCTGTCTTCTACCAGTATCCATTTAAT 1626
Query 1535 GTCCCGGCCTACTATGCTTTGATTTTGAGGTCGCTTACTGTACTTGAAGGTTTGGCACTT 1594
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1627 GTCCCGCCCTACTATGCTTTGATTTTGAGGTCGCTTACTGTGCTTGAAGGTTTGGCACTC 1686
Query 1595 TACGCAGATCCTAATTTCAAAGTGCTAGCTGCTTCATACCCATATTTTGCCAAAAGGCTT 1654
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1687 TACGCAGATCCTAATTTCAAAGTACTAGCTGCTTCATACCCATATTTTGCCAAAAGGCTT 1746
Query 1655 CTCACTGATCCAAACCCGTATCTAAGAGATGCCCTTATCGAGCTTCTATTCAAAGATGGA 1714
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1747 CTCACTGATCCAAACCCGTATCTAAGAGATGCCCTTATCGAGCTACTATTCAAAGACGGA 1806
Query 1715 AAATTTAGATGGAATAGACTCGAGAACCTTCTACAACAGGGAAGTAAAGATAGAGACTTC 1774
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1807 AAATTTAGGTGGAATAGACTCGAGAACCTTCTACAACAGGGAAGTAAAGATAGAGACTTC 1866
Query 1775 TCAGCAAAGGATGCTCTACAACCAGTTTTGAAGCTGTTGCTGGATCCAAATGGTGAAGAG 1834
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1867 TCAGCAAAGGATGCTCTACAACCAGTTTTGAAGCTTTTGCTGGATCCAAATGGCGAAGAA 1926
Query 1835 CTTCGACTGTTAGTAATTAAGGAAGCTGTACGAGTCAGTGAAGCAATTGCGCTGGGCACT 1894
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1927 CTTCGATTGTTAGTAATTAAAGAAGCTGTACGAGTCAGTGAAGCAATTGCGCTGGGCACT 1986
Query 1895 GTTGTTGATACATACAATTCCCTTCCTGAGTTTCTGAGATCTCTTGTCTTCAATGGAAAT 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 GTTGTTGATACATACAATTCCCTTCCTGAGTTTCTGAGATCTCTTGTCTTCAATGGAAAT 2046
Query 1955 GGAAATGGCCCTCTTACAATGAGTACCACGGAACTTCAAAGCACGCTTGAGCTTCGGGAT 2014
|| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2047 GGGAATGGCCCTCTTACAATGAGTACCGCGGAACTTCAAAGTACGCTTGAGCTTCGGGAT 2106
Query 2015 CAGGTCTCTAGAATCTGGGGCCTTCTTCAATCTTCAGAAAGCTTTGATCCTGCTATTTTG 2074
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CAGGTCTCCAGAATCTGGGGCCTTCTTCAATCTTCAGAAAGCTTTGATCCTGCTATTTTG 2166
Query 2075 CAACCAATACTACAGGTGTTACAACAACCAGAGGCACGAAGACTTGGAGGACGTGTTGCA 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 CAACCAATACTACAGGTGTTACAACAACCAGAGGCACGAAGACTTGGAGGACGTGTTGCA 2226
Query 2135 GGCGGTGTAGGCCAACGTCTTGCAGCTCGGTTTCTGCAACAACTTCTTCGAGCCACAACA 2194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 GGCGGTGTAGGCCAACGTCTTGCAGCTCGGTTTCTGCAACAACTTCTTCGAGCCACAACA 2286
Query 2195 CCATCTTCGGCACCAACCCCATAGGTCCTCTTTTCTTCTCAGTGAAATGGTAAATTGTAT 2254
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 CCATCTTCTGCACCATCCCCATAGGTCCTCTTTTCTTCTCAGTGAAATGGTAAATTGTAT 2346
Query 2255 ATTAAGGCGAGACACTCGCAAACCACAGAATTGCTTCATGTTATAGTTATAGTAATATAG 2314
||||||||||||||||||||||||||||||||| ||||||||| ||| | | || || |
Sbjct 2347 ATTAAGGCGAGACACTCGCAAACCACAGAATTGTTTCATGTTACAGT-A-A-TA-TA--G 2400
Query 2315 TATCATTCTTTCTCTTTGTAT-GTTACTAGTAAAAAA 2350
||||||||||||||||||||| || |||||| |||||
Sbjct 2401 TATCATTCTTTCTCTTTGTATTGT-ACTAGTGAAAAA 2436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116716267125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5