BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477137
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79630.1 | Symbols: | Protein phosphatase 2C family protein... 2658 0.0
AT1G16220.1 | Symbols: | Protein phosphatase 2C family protein... 665 0.0
> AT1G79630.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:29962730-29965460 REVERSE LENGTH=2007
Length=2007
Score = 2658 bits (1439), Expect = 0.0
Identities = 1658/1761 (94%), Gaps = 26/1761 (1%)
Strand=Plus/Plus
Query 131 CAACCCCCGGAAATATCGTGGATTTCTTCGATCGGCGATTTCAAAAATTTGAACtttttt 190
|||||||| |||| ||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 190 CAACCCCCAGAAAAATCGTAGATTTCTTCAATCGGCGATTTAAAAAATTTGAACTTTTTC 249
Query 191 ttttAGAGCGTTGAGCTC---TTTCTTCGGAAGATTTTCAAAATGGGTCTGTGTTACTCA 247
||| | ||| |||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 250 TTTAAAAGCTTTGAGCTCTTTTTTCTTCGGATTATTTTCAAAATGGGTCTGTGTTATTCA 309
Query 248 GTAGATAGGACTACTGGGAAGGAACCTGGAGAAACGAGCACCACCGCCACTACGGC-G-G 305
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| | |
Sbjct 310 GTAGATAGGACTACTGGGAAGGAACCTGGAGAAGCAAGCTCCACCGCCACTACGGCGGAG 369
Query 306 AC-------GAGAGATTAGGCTCCGGAAGATGGCGGCGGCCTAGAGATTTAAAGGGCGGC 358
|| ||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 370 ACTGTGGAGGAGAGATCAGGCTCCGGAAGATGGCGGCGGCCGAGAGATTTAAAGGGTGGC 429
Query 359 GGCGATATCGAAGGGATTCCACAGGTTTTGGGTCGTTTGGTTTCGAATGGTTCAAGTAAG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGCGATATCGAAGGGATTCCACAGGTTTTGGGTCGTTTGGTTTCGAATGGTTCAAGTAAG 489
Query 419 ATTGCATGTCTTTACACACAGCAAGGCAAGAAAGGAACTAACCAAGACGCCATGCTCGTC 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 490 ATTGCATGTCTTTACACACAGCAAGGCAAGAAAGGGACTAACCAAGACGCCATGCTCGTC 549
Query 479 TTTGAGAACTTTTGTTCCAGAGACGATACAGTGTTTTGTGGTGTATTCGATGGACATGGA 538
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTTGAGAACTTTTGTTCGAGAGACGATACAGTGTTTTGTGGTGTATTCGATGGACATGGA 609
Query 539 CCATTTGGTCATATGGTTGCGAAGAAAGTCCGAGATACATTGCCCTTCACACTCTCAACC 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 610 CCATTTGGTCATATGGTTGCCAAGAAAGTCCGAGATACATTGCCCTTCACACTCTTAACC 669
Query 599 CAGTTGAAAACGACCTCAGAGTCAGACCAAAACGGCTTAGTTGGTGCGAATGGTTTTCAG 658
|||||||||| ||||||||||||||| |||| | ||||||||||||| ||||||||||||
Sbjct 670 CAGTTGAAAATGACCTCAGAGTCAGATCAAAGCAGCTTAGTTGGTGCCAATGGTTTTCAG 729
Query 659 ATCAAATGTACAGAGGAAGAGGAAATGCAGACAACTGAGTCTGAAGAAGTGCAGAAAACT 718
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 730 ATCAAATGTACAGAGGAAGAAGAAGTGCAGACAACTGAGTCTGAACAAGTGCAGAAAACT 789
Query 719 GAGTCTGTTACTACTATGGATGAGCAATGGTGTGAGTTAAATCCAAATGAGAACAACGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 790 GAGTCTGTTACTACTATGGATGAGCAATGGTGTGAGTTAAATCCAAATGTGAACAACGAT 849
Query 779 GAACTTCCGGAGATGTATCTGCCTCTTAAACATGCGTTGCTTAAGTCTTGTCAGCAGATA 838
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 850 GAACTTCCGGAGATGTATCTGCCTCTTAAACATGCGATGCTCAAGTCTTGTCAGCAGATA 909
Query 839 GATAAAGAGCTGAAAATGCATCCAACTATTGATTGCTTCTGCAGTGGAACAACTTCAGTC 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 910 GATAAAGAGCTGAAAATGCATCCAACTATTGATTGCTTCTGCAGCGGAACAACTTCAGTC 969
Query 899 ACTTTGATCAAGCAGGGTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ACTTTGATCAAGCAGGGTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTT 1029
Query 959 CTTGCCACGAGAGACGAAGACAATGCTTTGCTCGCTGTACAATTAACTGTGGACTTAAAA 1018
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1030 CTTGCCACAAGAGACGAAGACAATGCTTTGCTCGCTGTACAATTAACTATAGACTTAAAA 1089
Query 1019 CCAGATTTGCCAGGTGAATCAGCGAGAATCCAGAAATATAAAGGAAGAGTCTTTGCATTG 1078
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1090 CCGGATTTGCCAGGTGAATCAGCGAGAATCCAGAAATGTAAAGGAAGAGTCTTTGCATTG 1149
Query 1079 CAAGACGAGCCTGAGGTAGCTCGTGTATGGTTACCAAACAGCGATTCACCTGGTTTAGCA 1138
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1150 CAAGACGAGCCTGAGGTAGCTCGTGTATGGTTACCAAACAGTGATTCACCTGGTTTAGCA 1209
Query 1139 ATGGCTCGAGCTTTTGGAGATTTTTGTCTCAAAGATTACGGATTAATCTCTGTTCCAGAT 1198
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ATGGCTCGAGCTTTTGGAGACTTTTGTCTCAAAGATTACGGATTAATCTCTGTTCCAGAT 1269
Query 1199 ATCAACTACCGCCGCCTAACCGAACGAGACCAATTCATTATTCTTGCTAGTGACGGGGTA 1258
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1270 ATCAACTATCGCCGCCTAACGGAACGAGACCAATTCATTATTCTTGCTAGCGACGGGGTA 1329
Query 1259 TGGGATGTGTTGTCGAATAAAGAAGCTGTTGATATTGTTGCTTCAGCTCCTAGTCGAAAC 1318
||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| |
Sbjct 1330 TGGGATGTGTTGTCGAACAAAGAAGCTGTTGATATCGTTGCCTCAGCTCCTAGTAGAAGC 1389
Query 1319 ACAGCGGCTCGAGCTCTAGTGGACACAGCGGTTCGATCATGGAGAATCAAGTACCCAACT 1378
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1390 ACAGCGGCTCGAGCTCTAGTGGACACAGCGGTACGATCATGGAGAATCAAGTACCCAACT 1449
Query 1379 TCCAAGAACGATGACTGTACTGTAGTCTGCCTCTTTCTACAAGATTCATCAGTAGCCATG 1438
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1450 TCCAAGAACGATGACTGTACAGTAGTCTGTCTCTTTCTACAAGATTCATCAGTAGCCATG 1509
Query 1439 GAAGTTTCAAGCAATGTAATGAAGCATTCACACAAAGAAGAGTCCATAGAGAGTGTCAGT 1498
||||| |||| |||||||| |||| |||||| |||||||||||| ||||||||||||| |
Sbjct 1510 GAAGTCTCAACCAATGTAAAGAAGGATTCACCCAAAGAAGAGTCTATAGAGAGTGTCACT 1569
Query 1499 AACAGTACAAGCAAGGAGGAGGATGAGATTGTCCCCGTTAAAGACGAGAAAATCCCTGCA 1558
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1570 AACAGCACAAGCAAGGAGGAGGATGAGATTGTCCCCGTTAAAGACGAGAAAATCCCTG-A 1628
Query 1559 G-GTTGCGGGATTGAGTCGAAGATGATGACAATGACACTTGCGGAATGTATCTCGGTTGC 1617
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAGTTGCGGGATTGAGTCGAAAATGATGACAATGACACTTGCGGAATGTATCTCGGTTGC 1688
Query 1618 ACAGGATGATGAAGAGTGGTCTGCTTTGGAAGGATTGACAAGGGTTAACAGTCTATTGAG 1677
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1689 ACAAGATGATGAAGAGTGGTCTGCTTTGGAAGGATTGACGAGGGTTAACAGTCTCTTGAG 1748
Query 1678 CATTCCAAGGTTCTTATCTGGTGAGCTTAGATCAACTAGTTGGAGAAAATGGTTGTGACt 1737
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1749 CATTCCAAGGTTTTTATCTGGTGAGCTCAGATCAACTAGTTGGAGAAAATGGTTGTGACT 1808
Query 1738 tttttttGACTTGTGTGATTCTAAGTTAAAGCCCACAAATACACAATGGATATCACGATG 1797
|||||||||||| ||||||||||||||| ||| ||||| |||| | |||||||||||
Sbjct 1809 TTTTTTTGACTTAAGTGATTCTAAGTTAATGCCGACAAAAACACT-TC-ATATCACGATG 1866
Query 1798 TTCCAACTCttttttttttttttttCTTTTCTTGGAAGTTATTTGCAGATATATAATCTT 1857
|||||||| |||||| || || || ||||||||| ||||||||||||||||||||
Sbjct 1867 TTCCAACT-TTTTTTCTTCTT----CT---CTTGGAAGTGATTTGCAGATATATAATCTT 1918
Query 1858 T-T-GTTTCAATTAGTCTTTC 1876
| | |||| ||||||||||||
Sbjct 1919 TCTTGTTTAAATTAGTCTTTC 1939
Score = 189 bits (102), Expect = 8e-47
Identities = 124/134 (93%), Gaps = 4/134 (3%)
Strand=Plus/Plus
Query 1 CCCGAGAAAAT--AGCAG-TTTTCCTAAAGCTAAAGCTAAAACTAAAAGCTAAAGTAGTG 57
||||||||||| | ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 22 CCCGAGAAAATAAACCAGAGGTCCCTAAAGCTAAAGCTAAAACTAAAAGCTAAAGTAGTG 81
Query 58 TGGAttttctagatgccaagtttcggtttttgagcctttttaagctcttttctggttttc 117
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 82 TGGATTTTCTAGATGCCAAGTTTCGTTTTTTGAGCCTTTT-AAGCTCTTTTCTGGATTTC 140
Query 118 gtttttctcgtttc 131
||||||||||||||
Sbjct 141 GTTTTTCTCGTTTC 154
> AT1G16220.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:5548653-5550553 FORWARD LENGTH=1476
Length=1476
Score = 665 bits (360), Expect = 0.0
Identities = 578/684 (85%), Gaps = 11/684 (2%)
Strand=Plus/Plus
Query 740 GAGCAATGGTGTGAGTTAAATCCAAATGAGAACAACGATGAA-C--TT-CCGGAGATGTA 795
|||||||||||||||||| | | | |||||| |||| || | || || ||||||||
Sbjct 448 GAGCAATGGTGTGAGTTACAGCTATGTGAGAAGGACGA-AAAGCTATTCCCCGAGATGTA 506
Query 796 TCTGCCTCTTAAACA-TGCGTTGCTTAAGTCTTGTCAGCAGATAGATAAAGAGCTGAAAA 854
||| ||||||||| | || ||||| ||| ||||||| ||||| ||||| ||| | ||||
Sbjct 507 TCTCCCTCTTAAA-AGGGCTTTGCTCAAGACTTGTCAACAGATGGATAAGGAGTTAAAAA 565
Query 855 TGCATCCAACTATTGATTGCTTCTGCAGTGGAACAACTTCAGTCACTTTGATCAAGCAGG 914
|||||||||| || |||| |||||||| ||||||||||| |||||| | ||||| ||||
Sbjct 566 TGCATCCAACCATCAATTGTTTCTGCAGCGGAACAACTTCTGTCACTGTAATCAAACAGG 625
Query 915 GTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTTCTTGCCACGAGAGACG 974
|| ||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 626 GTAAGGATCTGGTGGTGGGAAATATTGGTGACTCGAGAGCCGTTCTAGCCACAAGAGACC 685
Query 975 AAGACAATGCTTTGCTCGCTGTACAATTAACTGTGGACTTAAAACCAGATTTGCCAGGTG 1034
|||||||||||||| | ||||||||||| || | ||||||||||| ||||||||| |||
Sbjct 686 AAGACAATGCTTTGGTGGCTGTACAATTGACCATAGACTTAAAACCTGATTTGCCAAGTG 745
Query 1035 AATCAGCGAGAATCCAGAAATATAAAGGAAGAGTCTTTGCATTGCAAGACGAGCCTGAGG 1094
||||||| |||||||| | || |||||| ||||| ||||| || ||||||||||||||||
Sbjct 746 AATCAGCAAGAATCCATAGATGTAAAGGTAGAGTGTTTGCCTTACAAGACGAGCCTGAGG 805
Query 1095 TAGCTCGTGTATGGTTACCAAACAGCGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 1154
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TTGCGCGTGTGTGGTTACCGAACAGCGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 865
Query 1155 GAGATTTTTGTCTCAAAGATTACGGAT-TAATCTCTGTTCCAGATATCAACTACCGCCGC 1213
| || || || || |||||||| || | |||||||||| || ||||||||||||| |
Sbjct 866 GGGACTTCTGCCTTAAAGATTATGG-TCTAATCTCTGTCCCGGATATCAACTACCATAGA 924
Query 1214 CTAACCGAACGAGACCAAT-TCATTATTCTTGCTAGTGACGGGGTATGGGATGTGTTGTC 1272
|| || ||| |||| || | | |||||||| |||| |||||||||||||||||| |||||
Sbjct 925 CTCACTGAAAGAGATCAGTAT-ATTATTCTAGCTACTGACGGGGTATGGGATGTTTTGTC 983
Query 1273 GAATAAAGAAGCTGTTGATATTGTTGCTTCAGCTCCTAGTCGAAACACAGCGGCTCGAGC 1332
||| |||||||||||||||||||| |||||||||||||||||| | || || ||||| ||
Sbjct 984 GAACAAAGAAGCTGTTGATATTGTGGCTTCAGCTCCTAGTCGAGATACTGCAGCTCGTGC 1043
Query 1333 TCTAGTGGACACAGCGGTTCGATCATGGAGAATCAAGTACCCAACTTCCAAGAACGATGA 1392
| |||| ||||| ||||||||| ||||||| | ||||| || ||||||||||| |||||
Sbjct 1044 TGTAGTCGACACGGCGGTTCGAGCATGGAGGCTTAAGTATCCTACTTCCAAGAATGATGA 1103
Query 1393 CTGTACTGTAGTCTGCCTCTTTCT 1416
||| ||||||| || ||||||||
Sbjct 1104 TTGTGCTGTAGTATGTCTCTTTCT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5