BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477143
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79670.1 | Symbols: RFO1, WAKL22 | Wall-associated kinase fa... 2026 0.0
> AT1G79670.1 | Symbols: RFO1, WAKL22 | Wall-associated kinase
family protein | chr1:29976725-29979350 REVERSE LENGTH=2431
Length=2431
Score = 2026 bits (1097), Expect = 0.0
Identities = 1287/1375 (94%), Gaps = 27/1375 (2%)
Strand=Plus/Plus
Query 72 GCACCAAGCTGTGTTTGTGAGTATGGTTACTTCTCTGGCTTTGGTTACAGCAACTGTTAC 131
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 827 GCACCGAGCTGTGTTTGTGAGTATGGTAACTTCTCTGGCTTTGGTTACAGTAACTGTTAC 886
Query 132 TGCAATCAGATTGGTTACAGAGGGAATCCATATCTTCC---TGG-TG----G--A-TG-C 179
||||||||||||||||||||||||||||| |||||||| ||| || | | || |
Sbjct 887 TGCAATCAGATTGGTTACAGAGGGAATCCTTATCTTCCTGGTGGATGCATTGACATTGAC 946
Query 180 --AT-T--GGAAGGAAAAGGACGAAACAGCTGTGGAGAACAAACTTGTGTGAATGTTCCT 234
|| | |||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 947 GAATGTGAGGAAGGAAAAGGACTAAGCAGCTGTGGAGAACTAACTTGTGTGAATGTTCCT 1006
Query 235 GGATCGTGGAGGTGCGAGCCGAA-GGAAGCACAGAAGATCAAGCCTGTGTTTCAAGGTCT 293
||||||||||||||||||| ||| || || | ||||||||||||| |||||| ||||||
Sbjct 1007 GGATCGTGGAGGTGCGAGCTGAATGG-AGTAGGGAAGATCAAGCCTCTGTTTCCAGGTCT 1065
Query 294 TGTTCTAGGTTTGGCACTATTGTTCTTGGTTCTTGGGATATGGGGATTGATCAAATTCGT 353
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1066 TGTTCTAGGTTTTCCACTGTTGTTCTTGGTACTTGGGATATGGGGATTGATCAAGTTCGT 1125
Query 354 TAAGAAGAGAAAGAAGATTATCCGAAAGAGAATGTTCTTTAAACGTAATGGAGGCTTGTT 413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TAAGAAGAGAAGGAAGATTATCCGAAAGAGAATGTTCTTTAAACGTAATGGAGGCTTGTT 1185
Query 414 GTTGAAACAACAGTTAACTACAAGAGAAAGAGGTAATGTGGAGACATCGAAGATATTCAG 473
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1186 GTTGAAACAACAGTTAACTACAAGAG---GAGGTAATGTGCAGTCATCGAAGATATTCAG 1242
Query 474 TTCGCAAGAGCTGGAGAAAGCGACGGATAACTTCAACAAGAACAGGGTTCTTGGGCAAGG 533
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1243 TTCGAAAGAGCTGGAGAAAGCGACGGATAACTTCAATATGAACAGGGTTCTTGGGCAAGG 1302
Query 534 AGGTCAAGGCACTGTTTACAAAGGAATGTTGGTAGATGGACGAATCGTCGCTGTGAAAAG 593
||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1303 AGGTCAAGGCACTGTCTACAAAGGAATGTTGGTAGATGGGCGAATTGTTGCTGTGAAAAG 1362
Query 594 GTCT-AAGCTTTTGGATGAAGACAAAGTTGAGGAGTTCATCAATGAACTTGGTGTTCTCT 652
||| ||| |||| |||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1363 ATCTAAAG-TTTTAGATGAAGATAAAGTTGAGGAGTTTATCAATGAAGTTGGTGTTCTCT 1421
Query 653 CGCAGATTAACCATAGAAACGTTGTCAAACTCATGGGGTGTTGTCTCGAGACAGAGGTTC 712
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1422 CGCAGATTAACCATAGAAATATTGTCAAACTCATGGGGTGTTGTCTCGAGACAGAGGTTC 1481
Query 713 CTATCTTGGTTTATGAGCATATTCCAAATGGAGACCTATTCAAGCGTCTTCATGATGATT 772
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1482 CTATCTTGGTTTATGAACATATTCCAAATGGAGACCTATTCAAGCGGCTTCACCATGATT 1541
Query 773 CTGATGACTACACTATGACTTGGGATGTGCGATTGCGCAT-TGCTGTTGAGATTGCAGGA 831
||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1542 CTGATGATTACACTATGACTTGGGATGTGCGATTGCGCATCT-CTGTTGAGATTGCAGGA 1600
Query 832 GCACTTGCTTACTTGCACTCGGCTGCATCAACCCCGGTCTACCACAGAGACGTCAAGACC 891
|||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||
Sbjct 1601 GCACTTGCTTACTTGCACTCGGCTGCATCAACTCCGGTCTATCATAGAGATGTCAAGACC 1660
Query 892 ACAAACATACTTTTGGATGAGAAGTATAGAGCCAAGGTATCGGATTTCGGGACTTCGAGA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1661 ACAAACATACTTTTGGATGAGAAGTATAGAGCCAAGGTATCGGATTTCGGGACCTCGAGA 1720
Query 952 TCCATAAACGTAGATCAAACTCACTTGACTACTCTAGTTGCAGGTACTTTTGGATACTTG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 TCCATAAACGTAGATCAAACTCACTTGACTACTCTAGTTGCAGGTACTTTTGGATACTTG 1780
Query 1012 GATCCAGAGTACTTTCAAACTAGCCAGTTTACGGATAAAAGTGATGTTTATAGTTTTGGG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 GATCCAGAGTACTTTCAAACTAGCCAGTTTACGGATAAAAGTGATGTTTATAGTTTTGGG 1840
Query 1072 GTCGTCTTGGTTGAGCTCATAACTGGGGAAAAGCCGTTTTCTGTAATGCGGCCTGAAGAA 1131
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1841 GTCGTCTTGGTTGAGCTCATAACTGGAGAAAAGCCGTTTTCTGTAATGCGGCCCGAAGAA 1900
Query 1132 AACAGAGGACTTGCGTCTCATTTCATTGAGGCCATGAAACAGAACAGAGTTCTTGATATT 1191
||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1901 AACAGAGGACTTGTGTCTCATTTCAATGAGGCTATGAAACAGAACAGAGTTCTTGATATT 1960
Query 1192 GTTGATTCTCGGATCAAAGAAGATTGCAAGTTGGAACAAGTGTTGGCAGTGGCGAAACTT 1251
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1961 GTTGATTCTCGGATCAAAGAAGGTTGCACGTTGGAACAAGTGTTGGCTGTGGCGAAACTT 2020
Query 1252 GCCAGAAGGTGTTTAAGTCTAAAAGGGAAGAAACGGCCAAATATGAGAGAGGTTTCAATT 1311
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2021 GCCAGAAGGTGTTTAAGTCTAAAAGGGAAGAAACGACCAAATATGAGAGAGGTTTCAGTT 2080
Query 1312 GAGCTTGAGAGGATCCGTTCATCACCTGAGGATTTGGAGGTACATATTGAAGAAGAGGAC 1371
|||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||||
Sbjct 2081 GAGCTTGAGAGGATCCGTTCATCACCCGAAGATTTGGAGTTACATATTGAAGAGGAGGAC 2140
Query 1372 GAAGAAGAAC-CGCCATGGAAATCAACATGGATGATTCTTGGAGGGTCGACATGA 1425
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2141 GAAGAAGAATGCGCCATGGAAATCAACATGGATGATTCTTGGAGCGTCGACATGA 2195
Score = 128 bits (69), Expect = 1e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1 TTTACGGTGATTGAGCTTGGATGGTACTTTGATACATCAGATTCTCGGTTAACGAATCCT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTTACGGTGATTGAGCTTGGTTGGTACTTTGATACATCAGATTCTCGGTTAACGAATCCT 784
Query 61 GTGGGTTGTGTG 72
||||||||||||
Sbjct 785 GTGGGTTGTGTG 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5