BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477144
Length=2605
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79690.1 | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog... 3738 0.0
> AT1G79690.1 | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog
3 | chr1:29985176-29990388 FORWARD LENGTH=2720
Length=2720
Score = 3738 bits (2024), Expect = 0.0
Identities = 2179/2256 (97%), Gaps = 2/2256 (0%)
Strand=Plus/Plus
Query 224 GGGAGAGGTTCACAGAGATGGAGATTACCATCGTGCTGTTCATGTTTGGATTTTTGTGGA 283
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 250 GGGAGAGGTTCACAGAGATGGAGATTACCATCGTGCTGTTCATGTCTGGATTTTTGTGGA 309
Query 284 GACTAGTCAACAACTACTTCTCCAACTCCGATCTGATGATAAAGATTCGTGGCCTGGACA 343
||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 310 GACTACTCAACAGCTACTTCTCCAACTTCGATCTGATGATAAAGATTCTTGGCCTGGTCA 369
Query 344 ATGGGACATCTCTAGTGCTGGCCATATCTCAGCTGCTGATCCATCGCTTATATCTGCACA 403
||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||
Sbjct 370 ATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACATCGCTTCTATCTGCACA 429
Query 404 GCGGGAGCTCCAGGAAGAGCTTGGCGTAAAACTCCCAAAGGATGCATTTGAAAAGATATT 463
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 430 GCGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAAGGATGCATTTGAAAAGATCTT 489
Query 464 TGTTTTTCTGCAAGAATGTGTCACAAACGATGGCAAATTCATAAATAATGAGTTCAATGA 523
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CGTTTTTCTGCAGGAATGTGTCACAAACGATGGCAAATTCATAAATAATGAGTTCAATGA 549
Query 524 TGTGTATCTTGTTACAATTCTGCATCCAATCCCATTAGAAGCCTTTACTCTTCAAAAAGA 583
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGTGTATCTTGTTACTATTCTGCATCCAATCCCATTAGAAGCCTTTACTCTTCAAAAAGA 609
Query 584 GGAAGTCTCTGCTGTAAAATACGTACCTTACGAAGAATACAGAAACTTTCTGGCTAAGGA 643
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 610 GGAAGTCTCTGCTGTAAAGTACGTACCTTACGAAGAATACAGAAACTTTCTGTCTAAGGA 669
Query 644 AGATCCGGCTTATGTGCCATATGATGTAAATGGAGAGTATGGAAAACTATTTGACATTAT 703
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 670 AGATCCTGCTTATGTGCCATATGATGTTAATGGAGAGTATGGAAAACTATTTGACATAAT 729
Query 704 CAGGCAGAGGTGCCAAGTGAACACTGAGGCACGTAGTTTATCTCTGCAGAAGCAACTCCA 763
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 730 CAGACAGAGGTGCCAAGTGAACACTGAGGCCCGTAGTTTATCTCTGCAGAAGCAACTCCA 789
Query 764 GAGATATTCTCCAGTCACCCTTGAAGCAAAGTTGACAGAACTTTCTGAAGCAGATCAGAA 823
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 790 GAGATATTCTCCAGTCACCCTCGAAGCCAAGTTGACAGAACTTTCTGAAGCAGATCAGAA 849
Query 824 AGCGTTGGGTCTAATTGTGAAGGCTGCAAAAGTTATGGACGATATATTTTATGAGCAGGT 883
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 850 AGCGTTGGGTCTAATTGTGAAGGCTGCAAAAATTATGGACGATATATTCTATGAGCAGGT 909
Query 884 TTGGAACAGCAATCCAGCTCTAAGAGATTGGCTGAAGGATCATGCCAATGCATCAGAACT 943
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 910 TTGGAACAGCAATCCAGCCCTAAGAGATTGGCTGAAGGATCATGCCAATGCATCAAAACT 969
Query 944 GGACAAATTAAAATGGGATTACTTCATGATCAACAAAAGTCCATGGTCGTCTCTTGATGA 1003
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 970 GGACAAACTAAAATGGGATTACTTCACGATCAACAAAAGTCCATGGTCGTCTCTTGATGA 1029
Query 1004 AAATGAAGCATTCCTGAGTACGGCGGATTCAGCTGTAATGTTGCTTCCTGGCGCAACAAA 1063
||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 1030 AAATGAAGCATTCTTGAGTACTGCGGATTCAGCTGTAAAGTTGCTTCCTGGAGCAACAAA 1089
Query 1064 ATCCATTGCTGGCTGGAAGGGTCTTGAATATAGAGCAGCCTTTCCAGTGACTAAACCACC 1123
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGCCATAGCTGGCTGGAAGGGTCTTGAATATAGAGCAGCCTTTCCAGTGACTAAACCACC 1149
Query 1124 TGGTGCCAATTTCTATCCTCCCGATATGGATAAAATGGAGTTCACCTTATGGCTCAATGG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGGTGCCAATTTCTATCCTCCCGATATGGATAAAATGGAGTTCACCTTATGGCTCAATGG 1209
Query 1184 TCTTACGGAAGAGCAAAAGCATGCTGCAACAGGATTTTTCAGTGTTATAAAAAGGCGCAG 1243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1210 CCTTACGGAAGAGCAAAAGCATGCTGCAACAGGATTTTTCAGTGTTATAAAAAGGCGAAG 1269
Query 1244 TGAAGCTAATCTAGATGCTTCTGACCATCTTGCCAGCAGCACAAAGAAGTTCCCAGACTC 1303
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1270 TGAAGCTAATTTAGATGCTTCTGATCATCTTGCCAGCAGCACAAAGAAGTTACCAGACTC 1329
Query 1304 TAATTCCGATCTGTATACTGTTCCTTATTCGGAAATATATCGACCTCTCCTCACGAAAGC 1363
||||||||||||||||| | |||||||||| || |||||||||||| |||||| ||||||
Sbjct 1330 TAATTCCGATCTGTATAGTATTCCTTATTCAGAGATATATCGACCTTTCCTCAAGAAAGC 1389
Query 1364 TTCTGAACTT-TTGCACAAAGCTGGGGACTTGGTCAGTTCGCCTAGTTTGAAGAAGCTAC 1422
||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1390 TTCTGAA-TTCTTGCAGAAAGCTGGGGACTTGGTCAGTTCGCCAAGTTTGAAGAAGCTAC 1448
Query 1423 TGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAATACTATGAGTCAGACATCGCATGGA 1482
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1449 TGCACAGCAAAGCTGAAGCCTTCCTTTCAAATGAGTATTATGAGTCAGACATCGCATGGA 1508
Query 1483 TGGACTTGGATTCAAAGTTGGATATTACCATTGGTCCATATGAGACGTACGAGGATGAAA 1542
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 TGGACTTGGATTCAAAGTTAGATATTACCATTGGTCCATATGAGACGTACGAGGATGAAA 1568
Query 1543 TCTTTGGGTACAAGGCTACATTTGAAACCTTCATCGGTATTCGAGATGATAAAGCCACGG 1602
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1569 TCTTTGGGTATAAGGCTACATTTGAAACCTTCATCGGTATTCGAGATGATAAAGCCACAG 1628
Query 1603 CTGATCTGAAACTCTTTGGTGACAATCTAAAGCTATTGGAAGATAATCTCCCGCTTGACA 1662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1629 CTGATCTGAAACTCTTTGGTGACAATCTAAAGCTATTGGAAGATAATCTCCCGCTTGAGA 1688
Query 1663 GTGTATACAAATCGACAGATGTATCTGCTGCTCCTATTCGGGTCATCCAGTTAATTTACA 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 GTGTATACAAATCGACAGATGTATCTGCTGCTCCTATTCGGGTCATCCAGTTAATTTACA 1748
Query 1723 ATTCAGGAGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAA 1782
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 ATTCCGGGGATGTGAAGGGTCCTCAGACTGTTGCTTACAATTTGCCAAACGATGAAAAAA 1808
Query 1783 TTGTCAAAGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAGAGGCAAAGTTTG 1842
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 TCGTGAAGGATAGAGGAACATCAATGGTTATGCTCAAGAACGTCCAAGAGGCAAAGTTTG 1868
Query 1843 AACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGACCAGCGAGGATTAGTTG 1902
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1869 AACATATTTTAAAGCCTATAGCTGAAATCACCATCAGCAAGGAACAGAGAGGATTAGTTG 1928
Query 1903 ATTTTGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCC 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 ATTTTGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCC 1988
Query 1963 ATACCATAACCCTTCCTGATGGTCAAACCTCAACAGTGAGAAAGGAACTACAAGAAGTCC 2022
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 ATACCATAACCCTTCCTGGTGGTCAAACCTCAACAGTGAGAAAGGAACTACAAGAAGTCC 2048
Query 2023 ATTCTGCAATGGAAGAAGCAAAGGCAGATATAGTTGGTCTTTGGGCACTGAAGTTTCTCA 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 ATTCTGCAATGGAAGAAGCAAAGGCAGATATAGTTGGTCTTTGGGCACTGAAGTTTCTCA 2108
Query 2083 TCACTAAGGGTTTGCTTTCGAAGAGTATGGTGGAGAGTATGTATGTTTCGTTCCTAGCTG 2142
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 TCACTAAGGGGTTGCTTTCAAAGAGTATGGTGGAGAGTATGTATGTTTCGTTCCTAGCTG 2168
Query 2143 GTTGCTTTCGATCCATCCGGTTTGGTCTCACAGAAGCTCATGGGAAAGGGCAAGCCTTGC 2202
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 GTTGCTTTAGATCGATCCGGTTTGGTCTCACAGAAGCTCATGGGAAAGGGCAAGCCTTGC 2228
Query 2203 AATTCAACTATTTATATGAAAAAGGAGCCTTTGTTTTCCACAAGGACTCTACATTCTCGG 2262
||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 2229 AATTCAACTATTTATATGAAAAAGGAGCCTTCGTGTTCCACGAGGACTCTACATTCTCGG 2288
Query 2263 TTGATTTCGCTAAGATCGAAGGTGCAGTTGAGAGTCTGAGCCATGAGATACTAACCATTC 2322
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2289 TTGATTTCGCTAAGATCGAAGGTGCAGTTGAGAGCCTGAGCCATGAGATACTAACTATTC 2348
Query 2323 AAGGAAAAGGTGACAAAAACGGAGCAACATTGCTTCTAAATAAGTACTGCACTATCACCG 2382
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2349 AAGGAAAAGGTGACAAAAACGCAGCAACATTGCTTCTAAATAAGTACTGCACTATCACCG 2408
Query 2383 GACCATTGAAAACCGCTCTGGAGAATCTCGAACGAGTTAAGGTACCGGTGGATATATCTC 2442
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2409 GACCATTGAAAACCGCTCTGGAGAATCTCGAACGCGTTAAGGTACCGGTGGATATATCTC 2468
Query 2443 CGACATTTCCATTAGCAGAAGCATTGATGAACTGAG 2478
||||||||||||||||||||||||||||||||||||
Sbjct 2469 CGACATTTCCATTAGCAGAAGCATTGATGAACTGAG 2504
Score = 124 bits (67), Expect = 3e-27
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 89 AGAGAGAGCAATGGCGGAGGAGCACTTGGACGTTCTGACTAAATCCGGTGAGAAGACCGG 148
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 AGAGAGAGCTATGGCGGAGGAGCACTTCGACGTTCTGACTAAATCCGGTGAGAAGACCGG 234
Query 149 TGTGACCAAACCCAGG 164
|||| |||||||||||
Sbjct 235 TGTGTCCAAACCCAGG 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129330379054
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5