BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477146
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79700.2 | Symbols: | Integrase-type DNA-binding superfamil... 1474 0.0
AT1G16060.1 | Symbols: ADAP | ARIA-interacting double AP2 domai... 649 0.0
> AT1G79700.2 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:29990336-29993724 REVERSE LENGTH=1112
Length=1112
Score = 1474 bits (798), Expect = 0.0
Identities = 943/1007 (94%), Gaps = 34/1007 (3%)
Strand=Plus/Plus
Query 1 ATCCTTTATTATTCTCATTCACCGGTAATGGCAAAAGTCTCTCGGAGGAGCAAGAAAACA 60
||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 40 ATCTTTTATTCTTCTCATTCACCGGTAATGGCAAAAGTCTCTGGGAGGAGCAAGAAAACA 99
Query 61 ATCGTTGAAGATGAAATCAGCGATAAAACAGCGTCTGCATCTGAGGCTGCGTCCATTGTC 120
|||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |
Sbjct 100 ATCGTTGACGATGAAATCAGCGATAAAACAGCGTCTGCGTCTGAGTCTGCGTCCATTG-C 158
Query 121 TTTAA-ATCCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCCTCAACGCAGCTC 179
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 159 CTTAACATCCAAACGCAAACGTAAGTCGCCGCCTCGAAACGCTCCTCTTCAACGCAGCTC 218
Query 180 CCCTTATAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGTGGGA 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CCCTTACAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGTGGGA 278
Query 240 TAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGACAAGTTTATCTAGGGGCTTA 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 279 TAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGTCAAGTTTATCTAGGGGCTTA 338
Query 300 CGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTGGCAGCATTGAAGTACTGGGGACG 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 339 CGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAGTACTGGGGACG 398
Query 360 AGACACACTCTTGAACTTCCCTTTGCTGACTTATGACGAAGACGTCAAAGAAATGGAAGG 419
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 399 AGACACACTCTTGAACTTCCCTTTGCCGAGTTATGACGAAGACGTCAAAGAAATGGAAGG 458
Query 420 CCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGAGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 459 CCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTCTCGCGG 518
Query 480 TGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGCTAGAAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGCTAGAAT 578
Query 540 TGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGAAGAAGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGAAGAAGC 638
Query 600 AGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTACCAATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTACCAATTT 698
Query 660 CGACGTCAGCCGTTATCTAAACCCTAACGCCGCCG---AT--------T-C---T---AA 701
||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 699 CGACGTCAGCCGTTATCTAAACCCTAACGCCGCCGCGGATAAAGCCGATTCCGATTCTAA 758
Query 702 GCCAATTCGAA-----A--CG--ATCCCGAATCGTCGGATGATAACAAATCTCCGAAATC 752
||| ||||||| | || | |||||||||||||||||||||||||||||||||||
Sbjct 759 GCCCATTCGAAGCCCTAGTCGCGAGCCCGAATCGTCGGATGATAACAAATCTCCGAAATC 818
Query 753 AGAGGAAATAATCGAACCATCTACATCGCCTGAAGCT-ATTACAACTCGCCGGAGCTTTC 811
||||||| |||||||||||||||||||||| |||| | ||| |||||||||||||||| |
Sbjct 819 AGAGGAAGTAATCGAACCATCTACATCGCCGGAAG-TGATTCCAACTCGCCGGAGCTTCC 877
Query 812 CCGACGATATCCAGACGTATTTTGGGTGTCAAGACTCCGGCAAGTTAGCGACGGAGGAAG 871
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 878 CCGACGATATCCAGACGTATTTTGGGTGTCAAGATTCCGGCAAGTTAGCGACTGAGGAAG 937
Query 872 ACGTTATTTTCGGTGGTTTGAATTCAT-TCATAAATCCTGGTTTCTATAACGAGTTTGAT 930
|||| || |||| | |||| ||||| | | ||||||||||| ||||||||||||||||||
Sbjct 938 ACGTAATATTCGATTGTTTCAATTCTTAT-ATAAATCCTGGCTTCTATAACGAGTTTGAT 996
Query 931 TATGGACCTTAATCGTATTTCTTTACAAGTTTTGTTTTGATTATCTA 977
|||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 997 TATGGACCTTAATCGTATTT-TCTACAAGTTTTGTTTTGATTATCTA 1042
> AT1G16060.1 | Symbols: ADAP | ARIA-interacting double AP2 domain
protein | chr1:5508507-5511735 FORWARD LENGTH=1220
Length=1220
Score = 649 bits (351), Expect = 0.0
Identities = 498/569 (88%), Gaps = 9/569 (2%)
Strand=Plus/Plus
Query 118 GTCTTTAAATCCAAACGCAAACGTAAG-TCGCCGCCTCGAAACGCTCCTCCTCAACGCAG 176
||| ||||| | ||||||||||| | |||| || ||| ||||||| || ||||| ||
Sbjct 165 GTCCTTAAAGCTAAACGCAAACG-CCGATCGCAACCACGAGACGCTCCACCCCAACGTAG 223
Query 177 CTCCCCT-TATAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGT 235
|| || | |||||||||||||||||||| |||||||||| || |||||||| |||||||
Sbjct 224 CT-CCGTCCATAGAGGCGTCACAAGGCATCGATGGACTGGAAGGTACGAAGCACATTTGT 282
Query 236 GGGATAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGACAAGTTTATCTAGGGG 295
|||||||||| || |||||||| || ||||||||||||||| ||||||| ||| ||||||
Sbjct 283 GGGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGG 342
Query 296 CTTACGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTGGCAGCATTGAAGTACTGGG 355
| || ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 343 CATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGG 402
Query 356 GACGAGACA-CACTCTTGAACTTCCCTTTGCTG-ACTTATGACGAAGACGTCAAAGAAAT 413
||||||||| || ||||||||||||||||| || | |||||| |||||| ||||||||||
Sbjct 403 GACGAGACACCA-TCTTGAACTTCCCTTTG-TGTAATTATGAAGAAGACATCAAAGAAAT 460
Query 414 GGAAGGCCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTC 473
|||| |||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 461 GGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTC 520
Query 474 TCGAGGTGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGC 533
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 521 ACGAGGTGTATCAAAATACAGAGGCGTTGCAAAGCATCACCACAATGGGAGATGGGAAGC 580
Query 534 TAGAATTGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGA 593
| |||| ||||| |||||||| ||||||||| |||| |||||||| ||||| ||||||||
Sbjct 581 TCGAATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGA 640
Query 594 AGAAGCAGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTAC 653
||||||||| || || ||||| ||||| || || |||||||||||||| |||||||||||
Sbjct 641 AGAAGCAGCTATAGCGTACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTAC 700
Query 654 CAATTTCGACGTCAGCCGTTATCT-AAAC 681
|| |||||| ||||||||||||| ||||
Sbjct 701 TAACTTCGACATCAGCCGTTATCTGAAAC 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47822907944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5