BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477147
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79710.1 | Symbols: | Major facilitator superfamily protein... 2473 0.0
> AT1G79710.1 | Symbols: | Major facilitator superfamily protein
| chr1:29995116-29998058 FORWARD LENGTH=2585
Length=2585
Score = 2473 bits (1339), Expect = 0.0
Identities = 1443/1495 (97%), Gaps = 0/1495 (0%)
Strand=Plus/Plus
Query 29 AATGGCTAATCGATCGGAGGAAGCAGAGTACGAGAACGATTCTCGGAGAAATCACCAAGA 88
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 21 AATGGCCAATCGATCGGAGGAAGCAGAGTACGAGAACGATTCTCGGCGAAATCATCAAGA 80
Query 89 CAAGAAGAAAGAAGGAGTTTTAGATCTGGTGTTGAAACGGCCTATACGGTGGTTAAGAAT 148
|||||||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||
Sbjct 81 CAAGAAGAAAGAAGGAGTTTTAGATCTGGTACTGAAACGACCTTTACGGTGGCTAAGAAT 140
Query 149 GCTCATTGAAGAGCTTCACTGGAGCTTCTTCTTCGGTGTGATTGTCGTCTATGGAGTTAG 208
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 141 GCTCATCGAAGAGCTTCACTGGAGCTTCTTCTTCGGTGTGATTATCGTCTATGGAGTTAG 200
Query 209 CCAAGGACTTGGTAAAGGTCTCAGCAAAGTCAGCACTCAGTACTACTTCAAAGACGAGCA 268
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 201 CCAAGGACTTGGTAAAGGTCTCAGCAAAGTCAGCACACAGTACTACTTCAAAGACGAGCA 260
Query 269 GAAGATACAACCCTCTCAAGCTCAGATTTATGTTGGTTTGATTCAGATTCCTTGGATCAT 328
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 261 GAAGATACAACCCTCTCAAGCTCAGATTTACGTTGGTTTGATTCAGATTCCTTGGATTAT 320
Query 329 TAAACCTCTCTGGGGATTGTTGACTGATGTTGTCCCAGTTTGGGGTTACAGGAGACGACC 388
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 321 TAAACCTCTCTGGGGATTGTTGACTGATGTTGTCCCAGTTTTGGGTTACAGGAGACGACC 380
Query 389 CTATTTCGTATTCGCTGGTGTTCTTGCTATGATTTCCATGATGGTTTTATGGCTTCACAC 448
||||||| |||| || ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 381 CTATTTCATATTAGCCGGTTTTCTTGCTATGATCTCCATGATGGTGTTATGGCTTCACAC 440
Query 449 GAATCTGCATCTTGCACTGGCTTTGTCCTGTCTTGTGGCAGGAAGTGCTGGAGTTGCTAT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAATCTGCATCTTGCACTGGCTTTGTCCTGTCTTGTGGCAGGAAGTGCTGGAGTTGCTAT 500
Query 509 AGCAGATGTAACCATTGATGCTTGTGTGACACAATGCAGCATAAGCCATCCTACACTTGC 568
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 501 AGCAGATGTAACTATTGATGCTTGTGTGACACAATGTAGCATAAGCCATCCTACACTTGC 560
Query 569 TGCAGATATGCAAAGTTTGTGTGGTTTGAGTTCATCCATTGGTTCCTTGGTTGGTTTCTC 628
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 561 TGCAGATATGCAAAGTTTGTGTGGTTTGTGTTCTTCGATTGGTTCCTTGGTTGGTTTCTC 620
Query 629 CCTTAGTGGCATTTTGGTGCACTTGGTTGGGTCCAAGGGTGTGTACGGTTTACTCGGTGT 688
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 621 CCTTAGCGGCGTTTTGGTGCACTTGGTTGGGTCCAAAGGTGTGTACGGTTTACTCGGTGT 680
Query 689 GACTGCAGGATTGCTTGTTGTGGTTGGGATGGTTCTTAAAGAATCTCCTTCTCGCAGTCT 748
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 681 GACGGCAGGATTGCTTGTTGTGGTTGGGATGGTTCTGAAAGAATCTCCTTCTCGCAGTCT 740
Query 749 AGGTCGCAAGCATGTTAACGAGAAGTTTCTGGATGCTGGAAGTGCAATATGGAAAACCTT 808
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGGTCGCAAGCATGTTAACGACAAGTTTCTGGATGCTGGAAGTGCAATATGGAAAACCTT 800
Query 809 TCAATATGGTGAGGTGTGGCGACCATGCTTGTTCATGCTATTGTCTGCTGCAGTGAGCTT 868
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 801 TCAATATGGTGAGGTGTGGCGACCATGCTTGTTCATGCTATTGTCAGCTGCAGTGAGCTT 860
Query 869 GCACATTCACGAAGGCATGTTCTATTGGTACACAGATTCAAAAGATGGTCCTTCCTTTTC 928
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 861 GCACATTCACGAAGGCATGTTCTATTGGTACACGGATTCAAAGGATGGCCCTTCCTTTTC 920
Query 929 AAAGGAAGCTGTTGGATCCATTATGTCGTTTGGTGCAATCGGCTCTCTCGTGGGCATACT 988
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 921 AAAGGAAGCCGTTGGATCCATTATGTCGTTTGGTGCAATTGGCTCTCTTGTGGGAATACT 980
Query 989 TCTCTATCAGAACTTTCTGAAGAACTTCCCTTTCCGGAATGTCGTTTTCTGGGCACTTTC 1048
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 981 TCTCTATCAGAACTTTCTGAAGAACTTCCCTTTCAGGAATGTCGTCTTCTGGGCACTTTC 1040
Query 1049 CCTATCTGTCCTGTCAGGACTTCTGGATTTGATCCTGGTGCTGCGCATAAATCTGAAGCT 1108
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1041 CCTATCTGTCCTGTCAGGATTTCTGGATTTAATCCTGGTGCTGCGCATAAATCTGAAGCT 1100
Query 1109 TGGTGTCCCTGATTACTTCTTTATTGTGGTAGATGAGTTTGTTTCACATATGATAAGTAG 1168
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TGGTCTCCCTGATTACTTCTTTATTGTGGTAGATGAGTTTGTTTCACATATGATAAGTAG 1160
Query 1169 AATCAAGTGGTTACCCTTACTTGTTCTCAGTTCCAAGCTCTGCCCTGCCGGTATGGAAGG 1228
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1161 AATCAAGTGGTTACCCTTACTTGTTCTCAGCTCCAAGCTCTGCCCTGCCGGTATGGAAGG 1220
Query 1229 CACTTTCTTTGCTTTGCTCATGTCTATTGAACATGTAGGACATCTAGTGTCGTCATGGGG 1288
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1221 CACTTTCTTTGCTTTGCTCATGTCTATTGAACATATAGGACATCTAGTGTCGTCATGGGG 1280
Query 1289 CGGAGGAGTATTACTCCATGCCCTGAAAGTCACGCGTACTCAGTTTGATAATCTCTGGTT 1348
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1281 CGGAGGAGTACTACTCCATGCCCTGAAAGTTACGCGTACTCAGTTTGATAATCTCTGGTT 1340
Query 1349 GGTTATTGTGATCAGGAGTTTATTGAGGGTAATTCCAATTGGATTGGTCTTTTTGATACC 1408
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1341 GGTTATTGTGATCAGGAGTTTATTGAGGGTAATCCCAATTGGATTGGTCTTTTTGATACC 1400
Query 1409 AAATGTTGATTCAAACTCAACCATTCTCCCGGCTGAGATGTTAACAAACAGAATAAGTGA 1468
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1401 AAATGTTGATTCAAACTCAACCATTCTCCCTGCTGAGATGTTAACAAGTAGAATAAGTGA 1460
Query 1469 AGGTGTTGATACCGAGAAGATAGAGATGACCGCTCTGATCAGTGATGAAGCTTGA 1523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 AGGTGTTGATACCGAGAAGATAGAGATGACCGCTCTGATCAGTGATGAAGCTTGA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5