BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477149
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80950.1 | Symbols: | Phospholipid/glycerol acyltransferase... 2257 0.0
> AT1G80950.1 | Symbols: | Phospholipid/glycerol acyltransferase
family protein | chr1:30412544-30415113 REVERSE LENGTH=1484
Length=1484
Score = 2257 bits (1222), Expect = 0.0
Identities = 1405/1488 (94%), Gaps = 33/1488 (2%)
Strand=Plus/Plus
Query 1 GGGAAATCTAGAGACGACGAGGAAAAAAGGATGACACTTTCTTCAGATCCGCGATCTATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GGGAAATCTAGAGACGACGAGGAAAAAAGGATGACACTTTCTTCAGATCCGCGATCTATT 63
Query 61 TGATCATCTTC-TCCGAAC-CCACTCTTCCTTGTGTGATTCAATATCTGAAA-CC-CTCT 116
| ||||| | | ||| | | ||||||||||||||||||||||||||| || ||||
Sbjct 64 TCTTCATC-CCAACATAACACGA-ACTTCCTTGTGTGATTCAATATCTGAAACCCTCTCT 121
Query 117 C-T-C-T-T-----------AAAAAAGATTAGATTTTTAGGTTAGGTGAAACGAATAATA 161
| | | | | |||||||||||||||||||||||||||| || || ||||
Sbjct 122 CTTCCTTATAAAAAAAACCAAAAAAAGATTAGATTTTTAGGTTAGGTG-AA--AACAATA 178
Query 162 ATGGAATCAGAGCTCAAAGA--T---TT-GAATTCGAATCCTCCGTCGAGCAAAGAGGAA 215
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 179 ATGGAATCAGAGCTCAAAGATTTGAATTCGAATTCGAATCCTCCGTCGAGCAAAGAGGAC 238
Query 216 AGGCCGTTACTGAAATCAGATTCCGATTTGGCGGCCGCCATTGAAGAGTTAGACAAAAAG 275
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 239 CGGCCGTTACTGAAATCAGAATCCGATTTGGCGGCTGCCATTGAAGAGTTAGACAAAAAG 298
Query 276 TTCGCACCTTACGCGAGGACCGATTTGTATGGGACCATGGGTTTGGGTCCTTTTCCGATG 335
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 299 TTCGCACCTTACGCGAGGACCGATTTGTATGGGACGATGGGTTTGGGTCCTTTCCCGATG 358
Query 336 ACGGAGAAGATTAAGTTGGCGGTTGCATTGGTGACGCTTGTTCCTTTGCGGTTTATTCTC 395
|||||||| ||||| |||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 359 ACGGAGAATATTAAATTGGCGGTTGCATTGGTGACTCTTGTTCCATTGCGGTTTCTTCTC 418
Query 396 TCGATGAGCATCTTGCTTCTGTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCT 455
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCGATGAGCATCTTGCTTCTCTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCT 478
Query 456 CCTTATCGTGGGCCAGAGGAAGAGGAAGACGAAGGTGGTGTTGTTGTTCAGGAAGATTAT 515
||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 479 CCTTATCGTGGGCCAGAGGAAGAGGAAGATGAAGGTGGAGTTGTTTTTCAGGAAGATTAT 538
Query 516 GCTCACATGGAAGGATGGAAACGGACTGTTATCGTGCGCTCTGGGAGGTTTCTCTCTAGG 575
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 539 GCTCACATGGAAGGTTGGAAACGGACTGTTATCGTCCGGTCTGGGAGGTTTCTCTCTAGG 598
Query 576 GTTTTGCTTTTCGTCTTTGGGTTTTATTGGATTCACGAGAGCCGTCGAGATCGAGATTCA 635
|||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 599 GTTTTGCTTTTCGTTTTTGGGTTTTATTGGATTCACGAGAGCTGTCCAGATCGAGATTCA 658
Query 636 GCCATGGATTCCAATCATAAAACTACTTCTACAGAGATTAACCAGAAAGGGGAAGCCGCC 695
| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 GACATGGATTCTAATCCTAAAACTACTTCTACAGAGATAAACCAGAAAGGGGAAGCCGCC 718
Query 696 ACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCACGTTTCGTACTTGGACATT 755
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 ACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCATGTTTCGTACTTGGACATT 778
Query 756 TTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTT 838
Query 816 CCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAG 875
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAA 898
Query 876 TCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCACATAGG 935
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 TCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCTCATAGC 958
Query 936 AATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTAC 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTAC 1018
Query 996 TTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCTGTTCTTCCGGTAATTTTA 1055
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1019 TTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCAGTTCTTCCGGTAATATTA 1078
Query 1056 AAATATCCATATGAGCGCTTCAGTGTGGCATGGGATACAATATCCGGGGCACGCCACATA 1115
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 AAATATCCGTATGAGCGCTTCAGTGTGGCATGGGATACCATATCCGGGGCACGCCACATT 1138
Query 1116 TTATTCCTTCTCTGTCA-GTTCGTAAATCACTTGGAAGTCATACGGTTATCTGTATACTA 1174
||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 TTATTCCTTCTCTGTCAAGT-CGTAAATCACTTGGAAGTCATACGGTTACCTGTATACTA 1197
Query 1175 CCCATCTCAAGAAGAGAAAGATGATCCCAAACTTTATGCTAGCAATGTTCGGAGATTAAT 1234
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 CCCATCCCAAGAAGAGAAAGACGATCCCAAACTTTATGCTAGCAATGTTCGGAAATTAAT 1257
Query 1235 GGCCACCGAGGGTAACTTGATTTTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCA 1294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGCCACCGAGGGTAACTTGATTCTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCA 1317
Query 1295 CGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGAAA 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGAAA 1377
Query 1355 TTTTACTGGCCTGACAATGTTTGTAATGTAGTAGTCTTTACCAAAAACAACCATGACCAT 1414
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1378 TTTT-CTGGCCTGACAATGTTTGTAATGTAGTAGTCTTTACCAAAAACAACCACGACCTT 1436
Query 1415 GATTGAATAATGGTTCTTGTGATGATAATAAAAACCAAAAGTTTGATT 1462
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GATTGAATAATGGTTCTTGTGATGATAATAAAAACCAAAAGTTTGATT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72087982620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5