BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477150
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80940.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1389 0.0
> AT1G80940.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:30410701-30412289
FORWARD LENGTH=1246
Length=1246
Score = 1389 bits (752), Expect = 0.0
Identities = 1037/1163 (89%), Gaps = 66/1163 (6%)
Strand=Plus/Plus
Query 58 AGCTGAAACACAAAGCAAAAGCCTTTGGTAGTCGTAACCAAAACGCCAAATCATTACCGT 117
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 79 AGCTGAAGCACAAAGCAAAAGCATTTGGTAGTCGTAACCAAAACGCCAAATCATTACCGT 138
Query 118 TCAACTGAAATCTTACAGAGAG-CCTCTTTCCTT-GGAATTTCGATCCCGTGTACGTTAT 175
||||||||||||| |||||||| ||||||| ||| |||| |||||| || ||||||||||
Sbjct 139 TCAACTGAAATCTAACAGAGAGCCCTCTTTTCTTGGGAA-TTCGATTCCTTGTACGTTAT 197
Query 176 CTTCTTCTTTTCCTACTTCTCTTTCTCCATAA-TCGTG--T-GT-GGGGAAATTTTCAGA 230
||||||| || || ||||||||||| || || ||||| | | ||||||||||||||
Sbjct 198 CTTCTTC--TT-CTTCTTCTCTTTCT-CAAAATTCGTGTATCTTCTGGGAAATTTTCAGA 253
Query 231 -TTGGATGGAGAAAGGGATTGGATTTGAGAAAGAGAAGAAGACAGTGAGTGATGATGGGT 289
|| ||||||||||||| |||||||||||||||| | ||||||||| | | ||||||||
Sbjct 254 TTTAGATGGAGAAAGGGGTTGGATTTGAGAAAGACATGAAGACAGTCA--G-TGATGGGT 310
Query 290 TTGTCGGAGGTTTTTTCCCTGTCTCTACCACCAAGATCGCGTGGAAGTCAAGAAAAAGAT 349
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 311 TTGTCGGAGGTTTTTTCCCTGTCTCTACCACCAAGATCGCGTGGAAATCAAGAAAAAGAT 370
Query 350 CAGCATCGGCGAA-CTCAAACAAGGCACCGGAGGTTGTTATGGAGGTCACACCAGAGAAG 408
|||||| | ||| || | |||| |||||||||| ||||| |||||||||||||||||||
Sbjct 371 CAGCATTGTTGAACCT-AGACAAAGCACCGGAGGCTGTTACGGAGGTCACACCAGAGAAG 429
Query 409 AGCGAGATAACAGCAATGGAGACCGACAAAGTTGGGGAACCAACGACCACAACTCCTCTT 468
| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 430 AACGAGATAACAGCAATGGATACCGAGAAAGTTGGGGAACCAATGACCACAACTCCTCTT 489
Query 469 CTGTCCGAGAAAAGGAAAGCTCTGTTCGAGCCACTTGAACCCATTACAAACTTGAACGGA 528
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 CTGTCCGAGAAAAGGAAAGCTCTGTTCGAGCCACTTGAACCCATTACGAACTTGAACGGA 549
Query 529 AAGCGACCAACAGCTGCTGATTCATTGTTGCCACCGCCGGATTTCGAGACTGCAAACTAC 588
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AAGCGACCAACTGCGGCTGATTCATTGTTGCCACCGCCGGATTTCGAGACTGCAAACTAC 609
Query 589 CCGAAAGGCTGGTTGATCGGTAAGAAGAGGAAGCTAGTGAATGTTGATGTAGTTGAGAGC 648
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 610 CCAAAAGGCTGGTTGATCGGTAAGAAGAGGAAGCTTGTGAATGTTGATGTAGTTGAGAGC 669
Query 649 ATGCGAAGAATCGCTGTCCAAGAAATGAACAGAAAGGATCGAGAGATTGATGGGTTAAAC 708
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 670 ATGCGTAGAATAGCTGTCCAAGAAATGAACAGAAAGGATCGAGAGATAGATGGGTTAAAC 729
Query 709 GAGCAGCTAGAAGAGGATTCACGGTGCTTAGAGCATCTTCAACTTCAGCTGCTACAAGAA 768
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 730 GAGCAGCTAGAAGAGGATTCACGGTGCTTAGAGCATCTACAGCTTCAGCTGCTACAAGAG 789
Query 769 AGAAGCAAGAGAACAGAGATTGAAAGAGAGAACACAATGTTGAAAGAGCAAGTCGATATG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 AGAAGCAAGAGAACAGAGATTGAAAGAGAGAACACAATGTTGAAAGAGCAAGTTGATATG 849
Query 829 CTTGTCAACATGATACAACAAGATGAAGAAGAAGGAGCTGAAGAACCCTAAGCTATTTTT 888
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| || |
Sbjct 850 CTTGTGAACATGATACAAGAAGATGACGAAGAAGGAGCTGAAGAACCCTAAGCTAGTTCT 909
Query 889 CCATCAAACTTATGTCCCACCTATAATAGCTGTGCTCTGTTTGTTT-ATTCTTTTGTAGA 947
| |||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 910 C-ATCAAATTTATGTCTCACCTATAATAGCTGTGTTCTGTTTTTTTTATTCTTTTGTAGA 968
Query 948 TTTGTCTCGTCGTCCATAAGAAGGAAGAAAAGAAAGAAGCTTTACAATGTATTATTTGGT 1007
||||||||||| | | || ||| |||||||||||||||||| || || |||||||||||
Sbjct 969 TTTGTCTCGTCCACAA-AA-AAG-AAGAAAAGAAAGAAGCTTAACCATCTATTATTTGGT 1025
Query 1008 TAAGCTACTGTTGTTCCCTTGTGT-AT-----------TA-T-A------T-AT-T---C 1042
||||||||| |||||||||||||| || || | | | || | |
Sbjct 1026 TAAGCTACTCTTGTTCCCTTGTGTGATAGAACAAAACATAATCAAGAACATTATATATTC 1085
Query 1043 TAAGTTCTGAGTTCTCCTGCAAGATTTGAACCTGGCATTTGATTGAATC-ATTGAAGTTC 1101
|||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 1086 TAAGTTATGAGTTCTCCTGCAAGATTTGAACCTGGCATTTGATTGAATCGATT-ATGTTC 1144
Query 1102 -TT----C-CG-AGGATGAA---GAACCATTTGgtgtgtgtgtgtgtgtgt-TG-CTT-C 1148
|| | | |||| ||| |||||||||||||||||||||||||||| | ||| |
Sbjct 1145 ATTGAAGCTCTTAGGAGGAAAAAGAACCATTTGGTGTGTGTGTGTGTGTGTGTATCTTTC 1204
Query 1149 ---AGCAAGAAACAGAGGCAAAA 1168
||||||||||||||||||||
Sbjct 1205 TTCAGCAAGAAACAGAGGCAAAA 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5