BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477153
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80920.1 | Symbols: J8 | Chaperone DnaJ-domain superfamily p... 970 0.0
> AT1G80920.1 | Symbols: J8 | Chaperone DnaJ-domain superfamily
protein | chr1:30403644-30404690 REVERSE LENGTH=852
Length=852
Score = 970 bits (525), Expect = 0.0
Identities = 611/649 (94%), Gaps = 20/649 (3%)
Strand=Plus/Plus
Query 55 AAATCATAATCTTCTCTTTGATTCCATCTTGTGAACCGCCGG-A-GATAAAA-ATGACAA 111
||||||||||||||||||||||||||||||||||||| |||| | | |||| |||||||
Sbjct 89 AAATCATAATCTTCTCTTTGATTCCATCTTGTGAACCACCGGCATAAGAAAATATGACAA 148
Query 112 TTGCTTTAACGATCGGAGGAAAC-GGTTTCTCGGGTCTACCCGGATCGTCGTTTTCATCA 170
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct 149 TTGCTTTAACGATCGGAGGAAACGGGTTT-TCGGGTCTACCAGGATCGTCGTTTTCTTCA 207
Query 171 TCATCTTCATCGTTTCGATTGAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGA 230
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 208 TCATCTTCGTCGTTTCGATTAAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGA 267
Query 231 TCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGATCCGTATAAAACCCTTAAGATC 290
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 268 TCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGATCCGTATAAGACTCTTAAGATC 327
Query 291 CGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTAT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTAT 387
Query 351 CATCCTGATGTTTGTAGAGGAAGCAATTGTGGGGTTCAGTTTCAGACAATTAACGAAGCT 410
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 388 CATCCTGATGTTTGTAGAGGAAGCAATTGTGGGGTACAGTTTCAGACAATTAACGAAGCT 447
Query 411 TACGATATTGTGTTGAAGCAAAT-AAAGAATCAGATGGAAGGGACGGAGGAATTTGAGCC 469
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 448 TACGATATTGTGTTGAAGCAAATTAAA-AATCAGATGGAAGGGACGGAGGAATTTGAGCC 506
Query 470 GTTCGATGTATATGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGA 529
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GTTCGATGTATACGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGA 566
Query 530 GGAATGGATGGGATGGGAGGGAGCAGGGACCCGTGATTACTCGTCTCATGTTAATCCTTA 589
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 567 AGAATGGATGGGATGGGAGGGAGCAGGAACCCGTGATTACTCCTCTCACGTTAATCCTTA 626
Query 590 CGCTTGATAACC-AATGATTTCACTAATTAATTTCGAAA-A--TG-T--A--T----ATA 636
|||||||||| | |||||||||||||||||||||||||| | | | | | |||
Sbjct 627 CGCTTGATAAACGAATGATTTCACTAATTAATTTCGAAAGAAATCATCCAAATGTGTATA 686
Query 637 AATAACAATCAGAGAGAGACTAAAAGCACAACAATGTAAATAGGTGAAA 685
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 687 AATAACAATCAGAGAGAGACTAAAAGCACAACAATGTAAATAAGTGAAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5