BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477157
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80870.1 | Symbols: | Protein kinase superfamily protein | ... 3241 0.0
> AT1G80870.1 | Symbols: | Protein kinase superfamily protein
| chr1:30392133-30394383 FORWARD LENGTH=2251
Length=2251
Score = 3241 bits (1755), Expect = 0.0
Identities = 2089/2243 (93%), Gaps = 52/2243 (2%)
Strand=Plus/Plus
Query 1 ATGCCTTCAAGACCAAATCCAATCCGACCAAAGCTATT-CATCAACAGAACAAAAActct 59
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGCCTTCAAGACCAAATCCAACCCGACCAAAGCTATTCCAT-AACAGAACAAAAACTCT 59
Query 60 cttcttgattcttacaatctcatcttctcttgtaatcttcttcgcaattctctacttcat 119
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 CTTCTTGATTCTTACAATTTCATCCTCTCTTGTAATCTTCTTCGCAATTCTCTACTTCAT 119
Query 120 ctatcacctctggatttctcttcttAACCGCTCGAGGACCATCCCTTTCGACGTTGCTGC 179
|||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||
Sbjct 120 CTATCACCTCTGGATTTCTCTTCTGAACCGTTCCAGAACCATCCCTTTCGACGTTGCTGC 179
Query 180 TGCGTCGCCATTAAAGCTCCAGCTTTTCACTTACAAAGAGCTCAAACTAGCGACAAACGA 239
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 180 TGCATCGCCATTAAAGCTCCAGCTTTTCACTTACAAAGAGCTTAAACTAGCAACAAACGA 239
Query 240 TTTCGACGAATCCAATGTGATTGGTAAAGGCGGCTCTGGTACTGTGTTCAGAGGCATCAC 299
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 240 TTTCGACGAATCCAATGTGATTGGTAAAGGTGGCTCTGGTACTGTGTTCCGAGGCATTAC 299
Query 300 AAGAGAGGGCAAGCTTTTCGCGGTTAAGAGACTCGATAATCTCTCTATTCAAACAGAGAC 359
| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 300 ACGAGACGGCAAGCTTTTCGCGGTTAAGAGACTCGATAACCTCTCTATACAAACAGAGAC 359
Query 360 CGAGTTTCAGAACGAGTTACAGATTCTTGGCGGGTTAAAATCGTCTTTTTTGGTTACCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAGTTTCAGAACGAGTTACAGATTCTTGGCGGGTTAAAATCGTCTTTTTTGGTTACCCT 419
Query 420 TTTAGGTTATTGCGTCGAGAAGCATCACAGGTTCTTGATTTACGAGTATATGCCAAACAA 479
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 420 TTTAGGTTATTGCGTCGAGAAGAATCACAGGTTCTTGATTTATGAGTATATGCCAAACAA 479
Query 480 GAGTCTTCAAGAGCTTCTCTTCAACGAAGATGGAGATTCGTGCTTGCATTGGGAAAGGAG 539
||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 480 GAGCCTTCAAGAGCTTCTCTTTAACGAAGATGGCGATTCGTGCTTGAATTGGGAAAGGAG 539
Query 540 ATTCAGTATCCTCCTCGATGTAGCGAAAGCTCTCGAATTTATGCATTTCGGGTGTGACCC 599
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCGGTATCATCCTCGATGTAGCGAAAGCTCTCGAATTTATGCATTTCGGGTGTGACCC 599
Query 600 ACCAGTGATTCATGGAGATATCAAGCCTAGTAATGTTCTTCTGGATACTGAATTTAGGGC 659
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 600 ACCAGTGATTCATGGAGATATCAAGCCTAGTAATGTTCTTCTTGATTCTGAATTTAGGGC 659
Query 660 AAAGATTTCGGATTTTGGTTTGTCTAGGGTTAAAGTGGAGGGAGGTTATGGGGTTGATTT 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAAGATTTCGGATTTTGGGTTGTCTAGGGTTAAAGTGGAGGGAGGTTATGGGGTTGATTT 719
Query 720 GTTCAGCCAAGAACTTTCTGGGAATTTTGGAGGAGAGAGCACTCCTCAGACGGCCATTGG 779
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GTTTAGCCAAGAACTTTCTGGGAATTTTGGAGGAGAGAGCACTCCTCAGACCGCCATTGG 779
Query 780 TACTCCAACGCATCCTGAGGTTGATTTTGCTCTTGCTCTACAAGCTTCTTCGTCTTCCAA 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACTCCAACGCATCATGAGGTTGATTTTGCTCTTGCTCTACAAGCTTCTTCGTCTTCCAA 839
Query 840 GAACAGTAGAACAAGTCGTAACATTAAGGGAATGAATCTGAATTCGATGAGTTTAGCAAT 899
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 840 GAACAGTAGAACAAGCCGTAACATTAAGGAAATGAGTCTGAATTCGATGAGTTTAGCAAT 899
Query 900 GGAGGGTGAGGCAAAAGGAAAAGAGGTTTCACACGATGGGGATGATTCTAAAGTCAATCA 959
||| |||||| ||||||| | | | | || || | ||| | ||| |
Sbjct 900 GGATGGTGAGACAAAAGG---A-A------A-A-GA---GG-T--TTC---A---AATGA 935
Query 960 TGTTGTGTTGTCATGTGAGGATCATGAGTTTGATCAGGGCAATGAGATGAA--T-TTGAG 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 936 TGTTGTGTTGTCATGTGAGGATCATGAGTTTGATCAGGGCAAGGAGATGAATTTATTGAG 995
Query 1017 CCCTAATTCGGTTCTTGATTTGGGGAAGGGGTCGAAACAATGGGGGAGAGATTGGTGGTG 1076
|| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 996 TCCGAATTCGGTTCTTGATTTGGGGAAGGGGTCTAAGCAATGGGGGAGAGATTGGTGGTG 1055
Query 1077 GAAGCAAGAAGGTAGTGGTGAATTGTGTAGTAAAGACTATGTCAGGGAATGGATAGGGAG 1136
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1056 GAAGCAAGAAGGGAGTGGTGAATTGTGTAGTAAAGATTATGTTAGGGAATGGATAGGGAG 1115
Query 1137 TCAGATTGACACGGCGAATCCGGATTGGGATGATGAGAAGAAGATCAGCACTACTCCTGA 1196
|||||||||||| || |||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1116 TCAGATTGACACTGCTAATCCGGATTGGGATGATGACAAGAAGGTCATCACTACTCCTGA 1175
Query 1197 GGTGGGAGTTTCCACTAGGACAATCGATAAAGCAGAAGATCGAGATGAGTCTGGTTTGAA 1256
| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1176 GCTGGGAGTTTCGACTAGGACAATCGATAAAGCAGAACATCGAGATGAGTCTGGTTTGAA 1235
Query 1257 TGAATCTAGGTTTGACACTCTTGG-agagaagtttgcgaaagaagagatcaacgaaaagg 1315
|||||||||||||||||||| ||| |||||||||||| ||||||||||||| || | |||
Sbjct 1236 TGAATCTAGGTTTGACACTC-TGGAAGAGAAGTTTGCAAAAGAAGAGATCAGCG-AGAGG 1293
Query 1316 ccaag-a-agaa-attg--aaa-aagaagaagaagcacaggaatatggaggaatggtgga 1369
||| | | || || | ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1294 --AAGAACAAAAGATCGAAAAACAAGAAGAAGAAGCATAGGAATATGGAGGAATGGTGGA 1351
Query 1370 aagaggaagaGCATCAAGATGAGATGATTAACAAAAAGAAGATTAGAATTCTGAGAATCA 1429
||||||||||||||||||| ||||||| |||||||||||||||| || || |||||||||
Sbjct 1352 AAGAGGAAGAGCATCAAGAAGAGATGAATAACAAAAAGAAGATTGGAGTTTTGAGAATCA 1411
Query 1430 AGTTCAAGAATCGTTTGAAATTCCCACATTTTCGTTACTGTTTCCGTCAAAAGGGTGAAA 1489
|||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1412 AGTTCAAGAATCATTTGAAATTCCCGCATTTTCGTTACTGTTTCCGACAAAAGGGTGAAA 1471
Query 1490 ACAGCGTGCATGACCGAGAAGGAGAAGCAGCGGGAGAATTTAGCTTCAGAAGAGGATGGA 1549
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 ACAGCGTGCACGACCGAGAAGGAGAAGCAGCGGGAGAATTTAGCTTCAGAAGAGGATGGA 1531
Query 1550 GAAGGAAAAGCAATAGCAGCAGCAAGAAGAAGAAGAA---CAACAATAGATCAATGGGGA 1606
||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 1532 GAAGGAAAAGCAATAGCAGCAGCAAGAAGAAGAAGAAGAACAACAATGGATCGATGGGGA 1591
Query 1607 ATGAGATGTGGAGCGGTGATTTGTTCAGCCGCGAATTAAGCAGCACGACGACGAGTATGA 1666
|||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1592 GTGAGATGTGGAGTGGTGATTTGTTCAGCCGTGAATTAAGCAGCACGACGA-G--TATGA 1648
Query 1667 GAGGAACATTGTGTTATATAGCACCGGAATATGGAGGCGGTTGCTGTTACTTGATGGAGA 1726
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 GAGGAACATTGTGTTACATAGCACCGGAATATGGAGGCGGTTGCTGTTACTTGATGGAGA 1708
Query 1727 AAGGCGATATCTACAGCTTTGGAGTACTGATTCTAGTGATAATCTCGGGTAGGAGGCCTT 1786
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1709 AAGGAGATATCTACAGCTTTGGAGTACTGATTCTAGTGATAGTCTCGGGTAGGAGGCCTT 1768
Query 1787 TACACGTCCTTGCATCACCGATGAAGCTTGAAAAAGCGAATTTGGTGAGCTGGTGTAGGC 1846
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1769 TACACGTCCTTGCATCGCCGATGAAGCTTGAAAAAGCAAATTTGGTGAGCTGGTGTAGGC 1828
Query 1847 AATTGGCTCAGTCAGGGAATGTTCTTGAGCTGGTCGATGAGAAATTGAAGGATGGGTATA 1906
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1829 AACTGGCTCAGTCAGGGAACGTTCTTGAGCTGGTCGACGAGAAATTGAAGGATGGGTATA 1888
Query 1907 ACAAAGAAGAAGCAGGATTGTGCATTAACTTGGCTTTGGCTTGTCTGCAGAAAGCACCTG 1966
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1889 ACAAGGAAGAAGCAGGATTGTGCATTAACTTGGCTTTGGCTTGTCTGCAGAAAGCTCCAG 1948
Query 1967 AGCTACGGCCTCATGTTAGTGAAATTGTGAGAATCTTGAGAGGGGAAATGGATATTTCCT 2026
|| |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1949 AGTTACGGCCTGATGTTAGTGAAGTTGTGAGAATCTTGAGAGGGGAAATGGACATTTCCT 2008
Query 2027 CGACTGCTTTCGAGTTTTCTCCATCGCCTAC-GGCAAAATTTTATGGCAGTAGATCAAAG 2085
| |||||||||||||||||||||||||| || || |||| |||| ||||||||||| |||
Sbjct 2009 CCACTGCTTTCGAGTTTTCTCCATCGCC-ACCGGGAAAAGTTTACGGCAGTAGATCGAAG 2067
Query 2086 CGGAGAAGTTAAAACAGGGAAATGCGGAGTAGTACGTAGTTCGAGGTTTGATCTGATCTT 2145
|||||||| |||||||||| ||||| || |||| ||||||||||||||||| |||||||
Sbjct 2068 CGGAGAAGCTAAAACAGGGCAATGC--AG-AGTA-GTAGTTCGAGGTTTGATATGATCTT 2123
Query 2146 TTCATTTACGAAATTGTTGGATGTAACTTGAGAGAGTTTTCGCTTTTGAGAACTGTATTA 2205
||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 2124 TTCATTTTCGAAATTGTTGGATGTAACTTGAAAGAGTTTTAGCTTTTGAGAATTGTATTA 2183
Query 2206 TGTTGTAATGTTTGTAAACTATA 2228
||||||||| |||||||||||||
Sbjct 2184 TGTTGTAATTTTTGTAAACTATA 2206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110541600090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5