BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477159

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80860.2 | Symbols: ATPLMT, PLMT | phospholipid N-methyltran...   854    0.0  


> AT1G80860.2 | Symbols: ATPLMT, PLMT | phospholipid N-methyltransferase 
| chr1:30388264-30389302 REVERSE LENGTH=681
Length=681

 Score =  854 bits (462),  Expect = 0.0
 Identities = 533/567 (94%), Gaps = 5/567 (1%)
 Strand=Plus/Plus

Query  1    AAAAAACGTAAGCGAAATGGGATTATTGGCCGCGATCGGAGTTCTGTTGCCATTCCCGTT  60
            |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  3    AAAAAAAGAAAGCGAAATGGGATTATTGGCCGCGATCGGAGTTCTGTTGCCATTTCCGTT  62

Query  61   TTACTGGTGGCTATGGACAAATCCTCAGTCATGGGTCAATCTCTGCGGCCGAGGAAGAGA  120
             ||||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||
Sbjct  63   CTACTGGTGGCTGTGGACGAATGCTCAGTCATGGGTCAATCTCTGCGGCCGAGAAAGAGA  122

Query  121  CCCATCGACGGTAATGGCGCGTGTATCTCACGTgctcaaggctgctcaactcctctctct  180
            |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct  123  CCCATCGACGGTAATGGCACGTGTTTCTCACGTGCTCAAGGCTGCTCAACTCCTTTCTCT  182

Query  181  cttttccgtcgcttctctctcct-g--gcctccgctctacttctggcctctcATGGCCTT  237
            ||| ||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct  183  CTTCTCCGTTGCTTCTCTCTCCTGGCCGCCTCCGCTCTACTTCTGGCCTCTCATGGCCTT  242

Query  238  TGGCCAGTTTCTCAACTTCAGGGTATATCAATTGTTAGGTGAAGCTGGGACTTATTACGG  297
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  243  TGGCCAGTTTCTCAACTTCAGGGTATACCAATTGTTAGGTGAAGCTGGGACTTATTACGG  302

Query  298  TGTTCGATTCGGGAAGAACATACCGTGGGTTACAGAGTTCCCATATGGAGTTATCAGAGA  357
            |||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct  303  TGTTCGATTCGGGAAGAACATACCATGGGTTACAGAGTTCCCATTTGGAGTCATTAGAGA  362

Query  358  TCCACAGTATGTTGGGAGTATCATGTCTCTATTGGCATGCCTCTCTTGGGTTCC-TTTCC  416
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  363  TCCACAGTATGTTGGGAGTATCATGTCTCTATTGGCATGCCTCTCTTGGGTTCCATTTC-  421

Query  417  AATACATTCTCCTCTGGTCTCTCGGTTATGTTTTCATGATGTTTCTGGAATCAAAAGAAG  476
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct  422  AATACATTCTCCTCTGGTCTCTCGGTTATGTTTTCATGATGTTTCTCGAGTCAAAGGAGG  481

Query  477  ATCCAAGTGCTCGTGCCAAATCCCTCTCATGATTCCTAAGCATAACCCACTTGTGTTAGA  536
            |||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct  482  ATCCAAATGCTCGTGCCAAATCCATCTCATGATTCCTAAGCATAACCCACTAGTCTTAGA  541

Query  537  AGAGCAAAACTCCCAGGAACGTCAGGT  563
            |||||  |||||||| |||||||||||
Sbjct  542  AGAGCTCAACTCCCATGAACGTCAGGT  568



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34962966312


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5