BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477160
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80850.1 | Symbols: | DNA glycosylase superfamily protein |... 1711 0.0
> AT1G80850.1 | Symbols: | DNA glycosylase superfamily protein
| chr1:30385449-30387522 REVERSE LENGTH=1392
Length=1392
Score = 1711 bits (926), Expect = 0.0
Identities = 1216/1343 (91%), Gaps = 71/1343 (5%)
Strand=Plus/Plus
Query 1 TGAATGTGTAAACCTTACTCATTCATTCCCGTGATCCTACTTTGGGATTTCGCTAGAAGA 60
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAATGTGTAAACCTTA--C--TCATTCCCGTGATCCTACTTTGGGATTTCGCTAGAAGA 56
Query 61 ATTGGGAAATTTTTAGGTGACGACTCATTACTTTTAAGATTGTAAATGCAGGTCCTTTCT 120
| | ||||||||||||| | ||| |||||| |||||||||||||||||||||
Sbjct 57 A----G-----TTTAGGTGACGAC-C-TTA-ATTTAAGTTTGTAAATGCAGGTCCTTTCT 104
Query 121 TTCTAGGGTTTATC---------G---A--------AATTGGTTTGAGA--TTTTCTTTT 158
|||||||||||||| | | ||||||||||||| |||||||||
Sbjct 105 TTCTAGGGTTTATCGAAATTGGTGTAAATCTTTTGGAATTGGTTTGAGATTTTTTCTTTT 164
Query 159 GGGGAAATTGCAATTCCTTAGTCGACGTGACTCGTGATCCAGAGTGTGTTTTAAGTGAAG 218
|||| ||||||||||| ||||| | | ||||||||||| |||| ||||||||||||
Sbjct 165 GGGG-AATTGCAATTCATTAGT---C--G--TCGTGATCCAGTGTGT-TTTTAAGTGAAG 215
Query 219 -AAGGCATTTTCGAAAACCGGAGACTTTTAGGTCAATGTCGGCTCCACCGCGAGTTCGGT 277
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TAAGGCATTTTCGATATTCGGAGACTTTTAGGTCAATGTCGGCTCCACCGCGAGTTCGGT 275
Query 278 CTGTGGATTCATCCGACCGAGAATTCAGATCAGTTCTTGGTCCCGCCGGTAATAAGCTGC 337
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 276 CTGTGGATTCATCCGACCGAGAATTCAGATCAGTTCTTGGTCCCGCCGGCAATAAGCTGC 335
Query 338 AGCAGAAACC---GT---------TGAAGAAGCCGGTGGCTGATAAAACCAAAAACCTAA 385
|||||||||| || |||||||||| |||||||| ||||||||||||||||
Sbjct 336 AGCAGAAACCGTTGTCAAAGCCGGTGAAGAAGCCTGTGGCTGAGAAAACCAAAAACCTAA 395
Query 386 CCTTTACGAAGAAAATGCCGCAATGCTCGCCTCTAAGCCCTTCAATTCTGAGACGAAACG 445
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 396 CCTTTACGGAGAAAATGCCGCAATGCTCGCCTCTAAGCCCTCCAATTCTGAGACGTAATG 455
Query 446 GTATCTCGATGACCGCTTCGTATTCTTCAGATGCGTCATCTTCGTGCGAGTCGTCGCCGT 505
|||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 456 GTATTTCGATGACTGCTTCGTATTCTTCAGATGCGTCGTCTTCTTGCGAGTCGTCGCCGT 515
Query 506 TAAGTGTGGCGTCGACTTCGAGCGGGAAGAGGGCTTTGCGGCGAAGTGGGTCACTTTCTT 565
||||| || |||| |||||||| || ||||||| ||||||||||||||||||| ||||||
Sbjct 516 TAAGTATGACGTCTACTTCGAGTGGAAAGAGGGTTTTGCGGCGAAGTGGGTCAGTTTCTT 575
Query 566 CTTCCTCTTCCCTGAGAAGAAATCTGACGGAGGAGAGAGATGAGAAGGCTAGTGATTGCT 625
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CTTCCTCTTCACTGAGAAGAAATCTGACGGAGGAGAGAGATGAGAAGGCTAGTGATTGCT 635
Query 626 TCTCTGACGGTCGTAAAAGATGCGCTTGGATCACGCCTAAATCTGACCAATGTTACATTT 685
||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 636 TCTGTGACGGTCGTAAAAGATGCGCTTGGATCACCCCTAAATCTGATCAATGTTACATTG 695
Query 686 CTTTCCATGAT-ACTGAATGGGGAGTTCCTGTCCATGACGACAAGAGACTATTCGAGTTG 744
| ||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 696 CCTTCCATGATGA-AGAATGGGGAGTTCCTGTCCATGATGACAAGAGACTTTTCGAGTTA 754
Query 745 TTAAGCTTGTCTGGTGCTCTTGCTGAACTATCTTGGAAAGACATTCTTTCCAAAAGACAA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTAAGCTTGTCTGGTGCTCTTGCTGAACTATCTTGGAAAGACATTCTTTCCAAAAGACAA 814
Query 805 TTATTCAGGGAAGTTTTCATGGACTTTGATCCAATTGCAATATCTGAACTAACTAATAAG 864
|||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 815 CTATTCAGGGAGGTTTTCATGGACTTTGATCCAATTGCAATATCTGAATTAACAAATAAA 874
Query 865 AAGATAACATCCCCTGAGATTGCTACCACTACGTTACTATCAGAGCAAAAGTTACGGTCA 924
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 875 AAGATAACATCCCCTGAGATTGCTGCCACCACGTTACTATCAGAGCAAAAGCTACGGTCA 934
Query 925 ATCCTCGAGAATGCTAACCAAGTTTGCAAGATAATAGTTGAATTTGGATCATTTGACAAG 984
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 935 ATCCTCGAGAATGCTAACCAAGTTTGCAAGATAATAGGTGCATTTGGATCATTTGACAAG 994
Query 985 TACATTTGGAACTTCGTTAACCAGAAACCTACTCAAAGCCAATTCCGGTACCCACGCCAA 1044
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 995 TACATTTGGAACTTCGTTAACCAGAAACCTACTCAGAGCCAATTCCGGTACCCACGTCAA 1054
Query 1045 GTCCCTGTGAAGACTTCCAAAGCCGAGTTGATAAGTAAAGATCTAGTACGCAGAGGCTTT 1104
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1055 GTCCCTGTGAAGACTTCGAAAGCCGAGTTGATAAGCAAAGATCTTGTACGCAGAGGTTTT 1114
Query 1105 CGCAGTGTCAGTCCAACGGTTATTTACTCATTCATGCAAACAGCTGGTCTCACAAACGAC 1164
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1115 CGCAGTGTAAGTCCAACGGTTATTTACTCGTTCATGCAAACAGCTGGTCTCACAAACGAC 1174
Query 1165 CATCTCACTTGCTGCTTCAGACACCATGACTGCATGACAAAAGACGAGACTGGTAATTAA 1224
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1175 CATCTCACTTGCTGCTTCAGACACCATGACTGCATGACAAAGGACGAGACTGGTAATTAA 1234
Query 1225 AGAAAAACCAAGAGAGAATAGTTT-AACACTGTGCTGCTTAGGATGATGGTTTGCTGTTG 1283
|||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1235 AGAAAAACCAAGAGAGAATAGTTTTAACTCTGTGCTGCTTAGGATG--------CTGTTG 1286
Query 1284 TGCTGTGTTTGTATTTGTACAGA 1306
||||||||||| |||||||||||
Sbjct 1287 TGCTGTGTTTGCATTTGTACAGA 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5