BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477161
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80840.1 | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding prot... 1816 0.0
AT3G32090.1 | Symbols: | WRKY family transcription factor | ch... 267 2e-70
> AT1G80840.1 | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein
40 | chr1:30383691-30385499 FORWARD LENGTH=1195
Length=1195
Score = 1816 bits (983), Expect = 0.0
Identities = 1121/1185 (95%), Gaps = 19/1185 (2%)
Strand=Plus/Plus
Query 1 AACAATCCCACAATaaaaaaaGAAGAACCCAAGATCGACTCTTACTACGAATCTCTCTCA 60
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AACAATCCCACCATTAAAAAAGAAGAACCCAAGATCGACTCTTACTTCGAATCTCTCTCA 60
Query 61 ACtttttttCCTCAGCTTAC-GG-A-----A-AC---T---TCCACAAGAACCCATATCG 106
|| ||| ||||||||||||| || | | || | |||||||||||||||||||
Sbjct 61 AC-TTTCTTCCTCAGCTTACGGGAACTTCCACACATATACATCCACAAGAACCCATATCG 119
Query 107 AAGATTCATCCTACATATATTTACATGGATCAGTACTCATCCTCTTTGGTCGATACTTCA 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGATTCATCCTACATATATTTACATGGATCAGTACTCATCCTCTTTGGTCGATACTTCA 179
Query 167 TTAGATCTTACTATCGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGACAAGTGCT 226
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGACAAGTGCT 239
Query 227 TTGGTGGAAGAATTAAAGCGAGTGAGTGCTGAGAACAAGAAGCTCTCGGAGATGCTAACT 286
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGCTCTCGGAGATGCTAACT 299
Query 287 TTGATGTATGACAACTACAACGTCTTGAGGAAGCAACTTATGGAATATGTTAACAAGAGC 346
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGATGTGTGACAACTACAACGTCTTGAGGAAGCAACTTATGGAATATGTTAACAAGAGC 359
Query 347 AACATAACCGAGAGAGATCAAATCAGTCCTCCCAAGAAACGCAAATCTCCGGCCAGAGAG 406
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 360 AACATAACCGAGAGGGATCAAATCAGCCCTCCCAAGAAACGCAAATCCCCGGCGAGAGAG 419
Query 407 GACGCATTCAGCTCG-GCGGTTATTGGTGGAGTGTCGGAGAGTAGCTCAACGGATCAAGA 465
||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 GACGCATTCAGCT-GCGCGGTTATTGGCGGAGTGTCGGAGAGTAGCTCAACGGATCAAGA 478
Query 466 TGAGTATTTGTGTAAGAAGCAGAGAGAAGAGACTGTTGTGAAGGAAAAAGTCTCAAGAGT 525
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 479 TGAGTATTTGTGTAAGAAGCAGAGAGAAGAGACTGTCGTGAAGGAGAAAGTCTCAAGGGT 538
Query 526 CTATTACAAGACCGAAGCTTCTGACACCACCCTTGTTGTGAAAGATGGGTATCAATGGAG 585
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 539 CTATTACAAGACCGAAGCTTCTGACACTACCCTCGTTGTGAAAGATGGGTATCAATGGAG 598
Query 586 GAAATATGGACAGAAGGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGC 645
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAAATATGGACAGAAAGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGC 658
Query 646 TTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGGTTCAGAGAAGTGTGGAGGATCAGTCCGT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGGTTCAGAGAAGTGTGGAGGATCAGTCCGT 718
Query 706 GTTGGTTGCGACTTATGAGGGTGAACATAACCATCCAATGCCATCGCAGATCGATTCAAA 765
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 GTTAGTTGCAACTTATGAGGGTGAACACAACCATCCAATGCCATCGCAGATCGATTCAAA 778
Query 766 CAATGGCTTAAACCGCTACATCTCTCATGGTGGTTCAGCTTCAACACCCGCAGCGGCCAA 825
|||||||||||||||| ||||||||||||||||||||||||||||||||| || || ||
Sbjct 779 CAATGGCTTAAACCGCCACATCTCTCATGGTGGTTCAGCTTCAACACCCGTTGCAGCAAA 838
Query 826 CaaaaaaaGTAGCTTGACTGAGCCAGTGACTACCGTAGATTTGACTGAATCAAAGAAAGT 885
|| || |||||||||||||| ||| ||||||||||||||| ||| |||||| ||||||||
Sbjct 839 CAGAAGAAGTAGCTTGACTGTGCCGGTGACTACCGTAGATATGATTGAATCGAAGAAAGT 898
Query 886 GACGAGCCCAACATCAAGAATAGATTTTCCCGAAGTTCATAAACTTTTGGTGGAGCAAAT 945
|||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 899 GACGAGCCCAACGTCAAGAATCGATTTTCCCCAAGTTCAGAAACTTTTGGTGGAGCAAAT 958
Query 946 GGCTTCTTCCTTGACCAAAGATCCTAACTTTACAGCAGCTTTAGCAGCAGCTGTTACCGG 1005
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGCTTCTTCCTTAACCAAAGATCCTAACTTTACAGCAGCTTTAGCAGCAGCTGTTACCGG 1018
Query 1006 AAAATTGTATCAACAGAATCATACCGAGAAATAGTTTAGTTTCAAATTCCGTTAGTGTTT 1065
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1019 AAAATTGTATCAACAGAATCATACCGAGAAATAGTTTAGCTTCAAATTCCGTTAGAGTTT 1078
Query 1066 TTAGATT-GAAATTGTCATGAGTTAGAGAAAGAGAGTAGATTATAATCCATTGTGATACT 1124
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTAGATTTGAATTTGTCATGAGTAAGAGAAAGAGAGTAGATTATAATCCATTGTGATACT 1138
Query 1125 GAAAATGTAACATGTAATCGTTTT-CATTCAATCTCCAATACATT 1168
|||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1139 GAAAATGTAACATGTAATCGTTTTTCATACAATCTCCAATACATT 1183
> AT3G32090.1 | Symbols: | WRKY family transcription factor |
chr3:13078956-13079921 FORWARD LENGTH=549
Length=549
Score = 267 bits (144), Expect = 2e-70
Identities = 164/174 (94%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 676 GGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTGGTTGCGACTTATGAGGGTGAACATAA 735
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 282 GGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGTGAACACAA 341
Query 736 CCATCCAATGCCATCGCAGATCGATTCAAACAATGGCTTAAACCGCTACATCTCTCATGG 795
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 342 CCATCCAATGCCATCGCAAATGGATTCAAACAATGGCTTAAACCGCTACATCTCTCATGG 401
Query 796 TGGTTCAGCTTCAACACCCGCAGCGGCCAACaaaaaaaGTAGCTTGACTGAGCC 849
|||||| ||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct 402 TGGTTCTGCTTCAACACCCGTTGCAGCCAACAAAAGAAGTAGCTTGACTGAGCC 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57329022390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5