BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477163
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80770.1 | Symbols: PDE318 | P-loop containing nucleoside tr... 2242 0.0
> AT1G80770.1 | Symbols: PDE318 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr1:30355115-30357964
FORWARD LENGTH=1685
Length=1685
Score = 2242 bits (1214), Expect = 0.0
Identities = 1337/1397 (96%), Gaps = 6/1397 (0%)
Strand=Plus/Plus
Query 31 AAAGTTTT-TATCTTTCTTGTTCGGAACTCAGAAACACGATGAAATTGGCCTCGAGCTTG 89
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AAAGTTTTCT-TCTTTCTTGTTCGGAACTCAGAAACACGATGAAATTGGCCTCGAGCTTG 172
Query 90 GTTCCTCATCAGTGGCGTCTTTTAACATCACCACAGCTTTCTCTACAAGCTCTCATTTTT 149
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 173 GTTCCTCATCAATGGCGTCTCTTAACATCACCACAGCTTTCTCTACAAGCTTTCATTTTC 232
Query 150 TCTTCAGCCAACACCCCAAAGTCTCACACTTTCTGGTCTCCAA-CTTTGCGTCAATGTCG 208
|| ||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 233 TCCACAGCCTCCACCACAAAGTCTCACACTTTCTGGTCTCCAAGC-TTGCGTCAATGTCG 291
Query 209 AAATCTTCAGACGGCTGTTTCTCCAATCGTCAGTTCAAGCTACTTGCCCACTTCCTACAT 268
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 292 GAATCTTCAGACGGCTCTTTCTCCAATCGTCAGTTCTAGCTACTTGCCCACTTCCTACAT 351
Query 269 CACTCAGAAGCAGATTGAAATCCCTACCTCCCCTGAAAAACAATCGCCACCAGTGCAGGA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CACTCAGAAGCAGATTGAAATCCCTACCTCCCCTGAAAAACAATCGCCACCAGTGCAGGA 411
Query 329 AGGTTTGGGTGCTTTTCAAAAACTGCCCATGGTGATGCCATCTATTGATTTATATTG-TT 387
||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||
Sbjct 412 AGGTTTGGGTGCTTTTCAAAAACTGCCCATGGTCATGCCATCTATTGATTTGTA-TGCTT 470
Query 388 CTGCTCTCAGGAAGTCCAAAAGAGTCCAACCAACTAAAGGCATTGCTAATATTGCAAAGC 447
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 471 CTGCTCTCAGGAAGTCTAAAAGAGTCCAACCAACTAAAGGCATTGCTAATATTGCTAAGC 530
Query 448 GAGAAAGAAATAGAGGTGCTAAACAGCTTGATGCATTCATGAAAGAACTGGCTCTTCCTT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 531 GAGAAAGAAATAGAGGTGCTAAACAGCTTGATGCATTCATGAAAGAACTGGCTCTACCTT 590
Query 508 TAAAAGGATACATGGAAAGTTTTCCGAGGAAGAGACTCCTGCATCCATATGAAAGGTCTC 567
||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 591 TAAAAGGCTACATGGAAAGTTTTCCCAGGAAGAAACTCTTGCATCCATATGAAAGGTCTC 650
Query 568 TTATTAACTTGACACTTGGTGATGGGAAGTATGAAGAGGTGTTAGGGAAAGTTGATGTTC 627
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 651 TTATTGACTTGACACTTGGTGATGGAAAGTATGAAGAGGTGTTAGGAAAAGTTGATGTTC 710
Query 628 TGAGGAAAAAGGTGCTATCTGTTGGAAAGGAACATGCTTCTCTCTGCGCCAAGGCTTTGT 687
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGAGGAAGAAGGTGCAATCTGTTGGAAAGGAACATGCTTCTCTCTGCGCCAAGGCTTTGT 770
Query 688 CAAAGAAAGAAGCAGAGGAACGCTTGAACGAAGGTGTGGAGAAGCTTGAACTGGTTTTCC 747
||||||| || |||||||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct 771 CAAAGAAGGAGGCAGAGGAACGCTTGAGCGAAGGTGTGGAGAAGCTGGAATTGGTTTTCC 830
Query 748 AACAACAAGGGAGAGCTGTTGATGATTTGCTAAGTATAGCGAAGGTTTTGAGGGCTATGC 807
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 831 AACAACAAGGGGGAGCTGTTGATGATTTGCTAACTATAGCGAAGGTTTTGAGGGCTATGC 890
Query 808 CAGTTGTTGACTTGGAAATGCCGACTCTTTGCCTTGTCGGAGCACCAAACGTTGGCAAAT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 891 CAGTTGTTGACTTGGAAATGCCGACTCTTTGCCTTGTCGGAGCACCAAACGTTGGGAAGT 950
Query 868 CATCGTTGGTCCGCATTCTTTCAACAGGGAAGCCTGAGATTTGCAATTATCCTTTCACAA 927
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CATCATTGGTTCGCATACTGTCAACAGGGAAGCCTGAGATTTGCAATTATCCTTTCACAA 1010
Query 928 CCAGAGGAATTCTGATGGGTCACATCGTTTTAAACTACCAACGATTTCAGGTTACAGACA 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CCAGAGGAATTCTGATGGGTCACATCGTTTTAAACTACCAACGATTTCAGGTTACAGACA 1070
Query 988 CCCCTGGCCTTCTTAGGAGATGTGATGAGGATAGGAATAATCTAGAGAAGTTAACTCTTG 1047
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1071 CCCCTGGCCTTCTTAGGAGATGCGATGAGGATAGGAATAATCTAGAGAAGTTAACTCTTG 1130
Query 1048 CTGTACTCACTCATCTTCCAACCGCGGTTCTATATGTTCATGATCTAACTGGAGAATGTG 1107
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1131 CTGTACTCACTCATCTTCCAACCGCGGTTCTATATGTTCATGATCTAACGGGAGAATGTG 1190
Query 1108 GGACTTCTCCTTCTGATCAGTTTCGAATTTATAAAGAGATGAAAGAGAGGTTTAAGGATT 1167
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1191 GGACTTCTCCTTCTGATCAGTTTCAAATATATAAAGAGATGAAAGAGAGGTTTAAGGATT 1250
Query 1168 ACCTGTGGATTGATGCTGTGTCCAAATGTGATCTGCTGGGAGGCTCACCGGTGATGTATG 1227
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1251 ACCTGTGGATTGATGCTGTGTCCAAATGCGATCTGCTGGGAGGCTCACCGGTGATGTATG 1310
Query 1228 CCAAAGAAGATAGAAGCAGCGATGACGCGGAAATCATTAAGTACAGAGAAACAGGACCTG 1287
||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||
Sbjct 1311 CCAAAGAAGATAGAAGCAGTGATGACGCGGAAATCATTAAGTACCGGGAAAGAGGACCTG 1370
Query 1288 ATGAATCAATTCATGTCTCGGTGAAAACAGAACAAGGTCTCAATGAGCTAAAGAACAAAG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ATGAATCAATTCATGTCTCGGTGAAAACAGAACAAGGTCTCAATGAGCTAAAGAACAAAG 1430
Query 1348 TGAAGGAAGTACTGAGTAATGAGATGGAGAAGATCAAAAGTGGAGATAAAATTGATCAAA 1407
|||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||
Sbjct 1431 TGAAGGAAGTACTGAGTAGTGAGATGGAGAAGATCCAAAGTGGAGAGAAAACTGATCAAA 1490
Query 1408 GTGTTGGTACTTGTTAG 1424
|||||| |||||| |||
Sbjct 1491 GTGTTGCTACTTGCTAG 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5