BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477174
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80730.1 | Symbols: ZFP1, ATZFP1 | zinc-finger protein 1 | c... 1188 0.0
> AT1G80730.1 | Symbols: ZFP1, ATZFP1 | zinc-finger protein 1 |
chr1:30339323-30340247 REVERSE LENGTH=925
Length=925
Score = 1188 bits (643), Expect = 0.0
Identities = 843/932 (90%), Gaps = 43/932 (5%)
Strand=Plus/Plus
Query 1 CAAtttttttACTTTCATTCTCTTTATATATTCTCTCTAGGC-------CATA-TACAGA 52
||||| ||||||||||||||||||||||||||||||||| || ||| |||| |
Sbjct 1 CAATTCTTTTACTTTCATTCTCTTTATATATTCTCTCTACGCTATAATATATATTACACA 60
Query 53 GAATATACATGGATCCGTCCATCAAAGGAGATCAAGAAATGTTAAAAATCAAGAAACAAG 112
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATATACATGGAACCGTCCATCAAAGGAGATCAAGAAATGTTAAAAATCAAGAAACAAG 120
Query 113 GTCATCAAGATCTTGAGTTGGGTTTGACCCTTTTGCCACGTGGAACCACGACTTCGTCAG 172
|||||||||||||||||||||| |||||||||||| ||||||||||| |||| || ||||
Sbjct 121 GTCATCAAGATCTTGAGTTGGGGTTGACCCTTTTGTCACGTGGAACCGCGACCTCATCAG 180
Query 173 AGCTCAATCTCATCGATTCTTTTAAAACCAGCTCATCGTCGACTTCTCATCATCATCAAC 232
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct 181 AGCTCAATCTCATCGATTCTTTCAAAACCAGCTCATCATCGACTTCTCATCATCAGCACC 240
Query 233 AGCAAGAACATTTGGCAGATCCGAGAGTGTTCTCTTGCAACTATTGTCAAAGAAAGTTCT 292
|||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 241 AGCAAGAACAATTGGCAGATCCGAGAGTGTTCTCGTGTAATTATTGTCAAAGAAAGTTCT 300
Query 293 ATAGCTCACAAGCACTAGGCGGCCACCAAAACGCTCATAAACGCGAGCGCACCTTGGCCA 352
|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 301 ATAGTTCACAAGCGCTAGGCGGTCACCAAAACGCTCATAAACGTGAGCGCACCTTAGCCA 360
Query 353 AACGTGGACAGTATTACAAGATGACTCTCTCCTCCTTGCCTTCTTCAGCGTTTGCGTTTG 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACGTGGACAGTATTACAAGATGACTCTCTCCTCCTTGCCTTCTTCAGCGTTTGCGTTTG 420
Query 413 GCCACGGTTCAGTCAGCAGATTCGCAAGCATGGCATCGTTACCATTACATGGCTCGGTGA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCCACGGTTCAGTCAGCAGATTCGCAAGCATGGCATCGTTACCATTACATGGCTCGGTGA 480
Query 473 ATAACAGGTCGACGTTAGGGATTCAAGCTCATTCAACGATCCATAAGCCCT--TT-TTAG 529
|||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 481 ATAACAGGTCAACGTTAGGGATTCAAGCTCATTCAACGATCCATAAGCCCAGCTTCTTAG 540
Query 530 GAAGACATACGGCGAGTTTAAGCCATATTTTCAAACAGAGCATTAACCAGAAACCGACCA 589
||||||| ||| |||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 541 GAAGACAAACGACGAGTTTAAGTCATGTTTTCAAACAGAGCATTCACCAGAAACCGACCA 600
Query 590 TCGGAAAGATGTTGCCGGAGAAATTTCACCTTGAAGTCGCCGGCAGTGATAACAGTAA-- 647
| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 601 TAGGAAAGATGTTGCCGGAGAAATTTCACCTTGAAGTCGCCGGAAATAATAACAGTAACA 660
Query 648 -G---------A--T-G-A-----TTGGACATTTCAAGAGAAATCAAGAAGACCATAATC 688
| | | | | |||||||||||||||| || |||||||| |||||||
Sbjct 661 TGGTTGCTGCTAAGTTGGAGAGAATTGGACATTTCAAGAGCAACCAAGAAGATCATAATC 720
Query 689 AGTTTAAGAAGATTGACTTGACTCTTAAGCTATGAGCTCTTAAATTGTCATCTTCTTTTT 748
|||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 721 AGTTTAAGAAAATTGACTTGACTCTTAAGCTATGAGCTCT------GCCATCTTCTTTTT 774
Query 749 AGTCTTCATTATAACtttttttttATTCTCATATTTGTTTGATATAATGATTGACGGCAG 808
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 775 AGTCTTCATTATAACTTTTTTT--ATTCTCATCTTTGTTTGATATAATGATTGACGGCAG 832
Query 809 GGTGTGTTAGAGTTTCACTAAT---CAAGTTGTACTTTTTATATATTCCATTGATGCCTT 865
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 833 GGTGTGTTAGAGTTTCACTAATGATCAAGTTGTACTTTTTATATATTTCATTGATACCTT 892
Query 866 GTGGGTGTAATTCAATATTTGAGGTCTATTTT 897
|| | ||||||||||||||| |||||| ||||
Sbjct 893 GTTGATGTAATTCAATATTTTAGGTCTGTTTT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5