BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477176
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80710.1 | Symbols: DRS1 | DROUGHT SENSITIVE 1 | chr1:303334... 2492 0.0
> AT1G80710.1 | Symbols: DRS1 | DROUGHT SENSITIVE 1 | chr1:30333423-30335871
REVERSE LENGTH=1702
Length=1702
Score = 2492 bits (1349), Expect = 0.0
Identities = 1592/1705 (93%), Gaps = 33/1705 (2%)
Strand=Plus/Plus
Query 1 ttttttttttGGGTGTAAAGAGAAAAAGTCTCAATTTTCTCAAG---C-ATCAATCAATG 56
|||||| |||| ||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 19 TTTTTTGTTTGTGTGTAAAGAGAAAAAATCTCAATTTTCTCAAGCATCAATCAATCAATG 78
Query 57 GCGACGGAGTACGAGCGGAAGAGATTGGAGAACATAAGACGGAACGATGAGATGATGGCG 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 79 GCGACGGAGTACGAGCGGAAGAGATTGGAGAACATAAGACGGAACGATGAGATGTTGGCT 138
Query 117 GCTCTCAATGTCCGTGCCAAAGCCTCTTCTCTTCTCTCGGCCGCAACCGCAGCCAAACGC 176
|||||||||||||| |||||||| ||||||||||||| ||| | | |||||||||
Sbjct 139 GCTCTCAATGTCCGCGCCAAAGCTTCTTCTCTTCTCT---CCG----C-C-GCCAAACGC 189
Query 177 TCTCGAGATGATTCTAAATCATTTAAGAAAAAGAAGCCCAAACCTGCTACAACAACGCCC 236
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 190 TCTCGAGATGATTCTAAATCTTTTAAGAAGAAGAAGCCCAAACCTGCT---TCAACGCCC 246
Query 237 ACTGTTATCCGAAAGTCTCTACGCACCAGAGGTTTGAATCCAGATTCCGGTGGCTTACCT 296
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 247 ACTGTTATCCGAATGTCTCTACGCACCAGAGGTTTGAATCCAGATTCCGCTGGCTTACCT 306
Query 297 GATAGG-TTTTCAGATTTCCGGATGGGTTCTCAGATCACACACAACAAACCGTCTCCTAA 355
||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 307 GAT-GGCTTTTCAGATTTCCGGATGGGTTCTCAGATCACACACAACCAACCATCTCCTCA 365
Query 356 GAAGCAATCGCCACGTCTATTGGCTCCTCTGCCCTTCGATTCTGCTTATGAAGGAGATGG 415
|||||||||||| ||||| ||||||||| | |||||||| || || ||||||||| | ||
Sbjct 366 GAAGCAATCGCCGCGTCTTTTGGCTCCTATTCCCTTCGAATCCGCGTATGAAGGATACGG 425
Query 416 TTCTTATACGCAATTGGTTGATACTCTTTTGGGTGTTGAGAGTAAGTCTTGTAGAGGCAA 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 426 TTCTTATACGCAATTGGTTGATACTCTTTTGGGTATTGAGAGTAAGTCTTGTAGAGGCAA 485
Query 476 ATTGGTTAAGGGAGAAACTGGA-TCGGTTAAGGATGAGAACGAGTCTCCTATGGTGAGCA 534
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
Sbjct 486 ATTGGTTAAGGGAGAAATTGGAGT-GGTTAAGGATGAGAACGAGTCTCCTATGGTGAGGA 544
Query 535 CTAGGAGTACTTCTCGTGTATCTAAAGTTTTTGTTAAAAAGGAAGAGCC---AGATGATT 591
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 545 CTAGGAGTAGTTCTCGTGTATCTAAAGTTTCTGTTAAAAAGGAAGAGCCTGAAGATGATT 604
Query 592 CCTTCAGTGATTGTGTGAAGAAGGAATTTGA-TATTCCGGTGAAGCTTGAGAAAATTGAG 650
|||||||||||| |||||| ||||||||| | ||||||||| |||| |||||||||||||
Sbjct 605 CCTTCAGTGATTATGTGAACAAGGAATTT-AGTATTCCGGTTAAGCCTGAGAAAATTGAG 663
Query 651 TTTGATCAGGATTTGTTGAGTTTAGAACCGCATAATGTAGCTCGTGTTGTGCCTGGGAGG 710
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 664 TTTGATCTGGATTTGTTGACTTTAGAACCGCAGAATGTAGCTCGTGTTGTGCCTGGGAGG 723
Query 711 ATTTTTGTTGTCCAGTTCTTACCTTGCGAGAATGTTAAGATGGTTGCTGCAGGGGACAAA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 ATTTTTGTTGTCCAGTTCTTACCTTGCGAGAATGTTAAGATGGTTGCTGCAGGGGACAAA 783
Query 771 CTTGGGAATGTTGGGTTTTGGAATTTGGATTGTGAGAATGAGGAAGATAATGATGGGATA 830
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 784 CTTGGGAATGTTGGGTTTTGGAATTTGGATTGTGGGAATGAGGAAGATAATGATGGGATA 843
Query 831 TATCTATTCACTCCTCACTCAGCACCAGTTTCATCTATCGTGTTTCAGCAAAACTCTCTA 890
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 844 TATCTATTCACTCCTCACTCAGCACCAGTTTCATCTATTGTGTTTCAGCAAAACTCTTTA 903
Query 891 TCAAGGGTTATTACCAGCAGCTATGATGGTCTCATCCGGTTGATGGATGTCGAGAAGTCG 950
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TCAAGGGTTATTAGCAGCAGCTATGATGGTCTCATCCGGTTGATGGATGTCGAGAAGTCG 963
Query 951 GTTTTTGATCTGCTTTATTCCACGGATGAAGCTATATTTTCGCTCTCGCAGAGACCAAAT 1010
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 964 GTTTTTGATCTGGTTTATTCCACGGACGAAGCTATATTTTCACTCTCGCAGAGACCAAAT 1023
Query 1011 GATGAGCAAAGCTTGTACTTTGGTGAGGATTATGGAATGTTCAATATATGGGACCTCCGA 1070
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1024 GATGAGCAAAGCTTGTACTTTGGTCAGGATTATGGAGTGTTCAATGTATGGGACCTCCGA 1083
Query 1071 GCAGGAAAATCAGTTTTCCATTGGGAGTTACATGAACAGAGGATTAACTCTATAGACTTC 1130
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1084 GCAGGAAAGTCAGTTTTCCATTGGGAGTTACATGAACGGAGGATTAACTCTATAGACTTC 1143
Query 1131 AACCCGCAAAATCCCCATGTCATGGCTACAAGTTCCACAGATGGAACTGCTTGCCTTTGG 1190
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1144 AACCCGCAGAATCCGCATGTCATGGCGACAAGTTCCACAGATGGAACTGCTTGCCTTTGG 1203
Query 1191 GACCTGAGAAGCATGGGAGCCAAAAAACCGAAAATATTGACTACTCTAAATCATTCTAGG 1250
||| |||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||
Sbjct 1204 GACTTGAGAAGCATGGGAGCCAAAAAACCGAAAACATTGTCTACTGTTAATCATTCTAGG 1263
Query 1251 GCTGTGCACTCTGCTTATTTCTCACCTTCTGGCCTTTTACTTGCAACTACAAGCCTTGAC 1310
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1264 GCTGTGCACTCTGCTTATTTCTCACCTTCTGGCCTTTCACTTGCAACTACAAGCCTTGAC 1323
Query 1311 AACTACATTGGTATTCTAAGCGGCGCAAATTTTGAGAATACTTACAAGATATATCACAAT 1370
|||||||||||| ||||||||||||| ||||||||||| |||| || |||||||||||||
Sbjct 1324 AACTACATTGGTGTTCTAAGCGGCGCCAATTTTGAGAACACTTGCATGATATATCACAAT 1383
Query 1371 AATAACACCAGCAGGTGGATCTCCAAATTCAGGGGAGTGTGGGGGTGGGATGATTCATAC 1430
|| ||||||||| |||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 1384 AA---CACCAGCAGATGGATCTCCAAATTCAAGGCAGTATGGGGGTGGGATGATTCATAC 1440
Query 1431 ATCTATGTTGGCAATTTGTCAAAAAAGATTGATGTGATCAATCCGAAACTAAAGCGAACA 1490
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1441 ATCTATGTGGGCAATTTGTCAAAGAAGATTGATGTGATCAATCCAAAACTAAAGCGAACA 1500
Query 1491 GTGATGGAACTGCATAACCCTCTG-ATGAAAGCTATACCATGCAGAATCCATTGTCATCC 1549
|||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||
Sbjct 1501 GTGATGGAACTGCATAACCCTCTGCA-GAGAGCTATACCATGCAGAATCCATTGCCATCC 1559
Query 1550 TTATAATGTTGGGACACTTGCAGGATCCACAGCTGGAGGACAGGTCTATGTTTGGACAGC 1609
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1560 TTATAATGTTGGAACGCTTGCAGGATCCACAGCTGGAGGACAAGTCTATGTTTGGACAAC 1619
Query 1610 AAAGTAGCCTACTTGACC-ATTTTCAATTAGCATGAGGTGTTGTGTTGTTTTGTTCTGTC 1668
|||||||| ||||||||| |||| |||||||||||| ||||||||||||||||| |||
Sbjct 1620 AAAGTAGCATACTTGACCTATTTG-AATTAGCATGAGATGTTGTGTTGTTTTGTTATGTT 1678
Query 1669 GTACAGAAGAAATGGAAGCAAGTTT 1693
||||| |||||||||||||||||||
Sbjct 1679 GTACA-AAGAAATGGAAGCAAGTTT 1702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5