BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477177
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1199 0.0
AT1G80980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1184 0.0
> AT1G80700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80980.1); Has 476
Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria
- 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0;
Other Eukaryotes - 270 (source: NCBI BLink). | chr1:30331922-30333400
FORWARD LENGTH=868
Length=868
Score = 1199 bits (649), Expect = 0.0
Identities = 768/822 (93%), Gaps = 21/822 (3%)
Strand=Plus/Plus
Query 18 CGCCGGGAGAGATCATCAGGGATGATTCGCGGCAGAGGCTCGTGGGT-CGGATTATCGAC 76
||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 40 CGCCGGGAGAGATCA--A--GATGATTCGCGGCAGAGGCTCGT-GGTCCGGATTATCGAC 94
Query 77 CCGGTTGAAGCTTTACAGGATCCGACGTCTCTGCACGAAAGGAGAGAATGGTGGGAACAA 136
|||||||||||||||||||| ||||||| ||||||| ||||||||||| | ||
Sbjct 95 CCGGTTGAAGCTTTACAGGACCCGACGTTTCTGCACAAAAGGAGAGAA---T------AA 145
Query 137 AGTCGAGAAGACGGAATCTAGCGTTGCTCATTACAGCGAGACTGAATCTAGTGTTTCTCG 196
| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 146 ACTCGAGAAGACGGAATCTAGCGTTGCGCATCACAGCGACACTGAATCTAGTGTTTCTCG 205
Query 197 CTACGATGAGACCTATAAGAAACTCGACAAGCTCGATTTCGTGACCGCTGCGAAGATCTT 256
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 206 CTACGATGAGACCTATAAGAAACTCGATAAGCTCGATTTCGTTACCGCTGCGAAGATCTT 265
Query 257 GTTCACTGAACCACCCAAGAAGAATAAATTTGGGTTTGATTGGCATGTGGTGCAATTCAT 316
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 266 GTTCACTGAACCACCCAAGAAGAACAAATTTGGGTTTGATTGGCATGTGGTGCAATTCAT 325
Query 317 TATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAAT 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAAT 385
Query 377 GAAGATCATGGATGCAGAACTTGGagagaagaaaaggaaagaagaagaaaagaaagagaa 436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 GAAGATCATGGATGCTGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAA 445
Query 437 agaagaagctgaacaaaaggcattagaagtagaagCAGCAACCAAGTCTCACGAAGAGCT 496
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 446 AGAAGAAGCTGAACAAAAGGCATTACAAGTAGAGGCAGCAACCAAGTCTCACGAAGAGCT 505
Query 497 AATGGAGATGAAACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAGATTGTTTTGGA 556
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 AATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGA 565
Query 557 AACCAAGAAACCTTCAGGAAATGCTCCAACCAAGACCCAAGAAGATCAATCTACTAAACT 616
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 566 AACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCTACTAAACT 625
Query 617 CTCCCCAAAAGAAGAATCGAAA-CCAGAAAAAGAACAGAAGAGCAATGTACAAAAACCAG 675
|||||||||||||| ||| | | |||||||||||||| ||| |||||||||| |||||||
Sbjct 626 CTCCCCAAAAGAAGTATC-ACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAG 684
Query 676 GTGATGGACCTCATTGAGATGATTACAAGGGAAGCTTAGGTGGTAGATGAAGAAGA-TAT 734
||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| | |
Sbjct 685 GTGATGGACCTCACTGAGATGATTAGAAGGGAAACTTAGGTGGTAGATGACGAAGAATGT 744
Query 735 ACCCTTCTGTGGGGTTATTATGCTTTTGGAACT-ACTACAGTAGTTGATGCAATTCTCTC 793
||||||||||||| ||||||| ||||||||||| | |||| ||||||||||| |||||||
Sbjct 745 ACCCTTCTGTGGG-TTATTATTCTTTTGGAACTGA-TACACTAGTTGATGCAGTTCTCTC 802
Query 794 ATTTTGCTTTTGTTTGTTGAATCACCTTTAGAATTAATATAG 835
||||| |||||||||||||||||||||||| |||||||||||
Sbjct 803 ATTTTACTTTTGTTTGTTGAATCACCTTTATAATTAATATAG 844
> AT1G80980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80700.1); Has 477
Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria
- 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0;
Other Eukaryotes - 274 (source: NCBI BLink). | chr1:30422058-30424087
REVERSE LENGTH=1418
Length=1418
Score = 1184 bits (641), Expect = 0.0
Identities = 754/805 (94%), Gaps = 21/805 (3%)
Strand=Plus/Plus
Query 18 CGCCGGGAGAGATCATCAGGGATGATTCGCGGCAGAGGCTCGTGGGT-CGGATTATCGAC 76
||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 631 CGCCGGGAGAGATCA--A--GATGATTCGCGGCAGAGGCTCGT-GGTCCGGATTATCGAC 685
Query 77 CCGGTTGAAGCTTTACAGGATCCGACGTCTCTGCACGAAAGGAGAGAATGGTGGGAACAA 136
|||||||||||||||||||| ||||||| ||||||| ||||||||||| | ||
Sbjct 686 CCGGTTGAAGCTTTACAGGACCCGACGTTTCTGCACAAAAGGAGAGAA---T------AA 736
Query 137 AGTCGAGAAGACGGAATCTAGCGTTGCTCATTACAGCGAGACTGAATCTAGTGTTTCTCG 196
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 737 ACTCGAGAAGACGGAATCTAGCGTTGCTCATCACAGCGAGACTGAATCTAGTGTTTCTCG 796
Query 197 CTACGATGAGACCTATAAGAAACTCGACAAGCTCGATTTCGTGACCGCTGCGAAGATCTT 256
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 797 CTACGATGAGACCTATAAGAAACTCGATAAGCTCGATTTCGTGACCGCTGCGAAGATCTT 856
Query 257 GTTCACTGAACCACCCAAGAAGAATAAATTTGGGTTTGATTGGCATGTGGTGCAATTCAT 316
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 857 GTTCACTGAACCACCCAAGAAGAACAAATTTGGGTTTGATTGGCATGTGGTGCAATTCAT 916
Query 317 TATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAAT 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CATCGTCTGCTTGCCATCTGTAGCTGTGTATCTGGTTGCTCAATATGCTCGCCGGAAAAT 976
Query 377 GAAGATCATGGATGCAGAACTTGGagagaagaaaaggaaagaagaagaaaagaaagagaa 436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 GAAGATCATGGATGCTGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAA 1036
Query 437 agaagaagctgaacaaaaggcattagaagtagaagCAGCAACCAAGTCTCACGAAGAGCT 496
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1037 AGAAGAAGCTGAACAAAAGGCATTACAAGTAGAGGCAGCAACCAAGTCTCACGAAGAGCT 1096
Query 497 AATGGAGATGAAACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAGATTGTTTTGGA 556
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1097 AATGGAGATGAGACAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGA 1156
Query 557 AACCAAGAAACCTTCAGGAAATGCTCCAACCAAGACCCAAGAAGATCAATCTACTAAACT 616
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1157 AACCAAGAAACCTTCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCAACTAAACT 1216
Query 617 CTCCCCAAAAGAAGAATCGAAA-CCAGAAAAAGAACAGAAGAGCAATGTACAAAAACCAG 675
|||||||||||||| ||| | | |||||||||||||| ||| |||||||||| |||||||
Sbjct 1217 CTCCCCAAAAGAAGTATC-ACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAG 1275
Query 676 GTGATGGACCTCATTGAGATGATTACAAGGGAAGCTTAGGTGGTAGATGAAGAAGA-TAT 734
||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| | |
Sbjct 1276 GTGATGGACCTCACTGAGATGATTAGAAGGGAAACTTAGGTGGTAGATGACGAAGAATGT 1335
Query 735 ACCCTTCTGTGGGGTTATTATGCTTTTGGAACT-ACTACAGTAGTTGATGCAATTCTCTC 793
||||||||||||| ||||||| ||||||||||| | |||| ||||||||||| |||||||
Sbjct 1336 ACCCTTCTGTGGG-TTATTATTCTTTTGGAACTGA-TACACTAGTTGATGCAGTTCTCTC 1393
Query 794 ATTTTGCTTTTGTTTGTTGAATCAC 818
||||| |||||||||||||||||||
Sbjct 1394 ATTTTACTTTTGTTTGTTGAATCAC 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5