BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477178
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80690.1 | Symbols: | PPPDE putative thiol peptidase family... 1533 0.0
> AT1G80690.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr1:30329068-30330803 REVERSE LENGTH=1178
Length=1178
Score = 1533 bits (830), Expect = 0.0
Identities = 1050/1149 (91%), Gaps = 43/1149 (4%)
Strand=Plus/Plus
Query 1 TTGTCATCAACTTATTCGACAGTTTATATAAAAATAAAACCGAGTCACTCTTTCATCGGA 60
||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 40 TTGTCATCAACTTATTCGACAGTTTATAT----A-AAAACCGAGTCA-TCTTTCATCGGA 93
Query 61 AGAACTTCCCTCCGGCCGATTTTCTGACGCCGGCGATA--CTC--T-A--TC--TC-CTC 110
|| |||||||||||||| |||||||||||||||||||| ||| | | || || ||
Sbjct 94 AGTACTTCCCTCCGGCCCATTTTCTGACGCCGGCGATACTCTCTTTCACCTCTTTCTTTC 153
Query 111 TGTCtt-t-t-t-tttctt--tttGTTTCTCTCCGGTGAAGAAAATGTTGGAGCCATTAC 164
| |||| | | | ||| || ||||||||||||| |||| ||||||| |||| ||||||
Sbjct 154 TTTCTTCTCTGTCTTTTTTGCTTTGTTTCTCTCCAGTGAGGAAAATGGCGGAGTCATTAC 213
Query 165 GATTCTCCG-CT----TAACTTG-T-AAACC-TTGAAAAGAAGAGGAAGAATTTGAAAGA 216
||||||||| || || | | ||||| ||| ||||||||||||||||||||||||
Sbjct 214 GATTCTCCGACTGAAAAAAGAAGTTAAAACCTTTG-AAAGAAGAGGAAGAATTTGAAAGA 272
Query 217 AAGGAAAATGCTTTGCCGGAAAAGCTCAAGCTTTGTGGATAGAGGCAATGTTCCGGTTTA 276
||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||
Sbjct 273 AAGGAAAATGCTTTGCCGGAAAAACTCAAGCTTGGTGGACAGAGGAAATGTTCCGGTTTA 332
Query 277 TCTCAATGTTTACGATCTAACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGT 336
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TCTGAATGTCTACGATCTTACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGT 392
Query 337 TTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTTTGGAGCTCATGAGTATCC 396
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 393 TTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTATGGAGCTCATGAATATCC 452
Query 397 AAGCACTGGAATTTTCGAAGGGGAGCC-AAGGCAATGTGAAGGCTTTACATTTAGGAAAT 455
||||||||| || |||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 453 AAGCACTGGGATATTCGAAGGGGAGCCGAA-GCAATGTGAAGGCTTTACGTTTAGGAAAT 511
Query 456 CGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTGAGAGCTACTATGGAGCAAC 515
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 512 CGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTCAGAGCTACTATGGAGCAAC 571
Query 516 TTGCTGACAACTACAAAGGAAGTTCTTATAATCTCATCACCAAGAACTGCAACCATTTCT 575
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 572 TTGCTGACAACTACAAAGGAAGTTCTTACAATCTTATCACCAAGAACTGCAACCATTTCT 631
Query 576 GCGATGAAACTTGTATCAAGCTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTG 635
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 632 GCGATGAAACTTGTATTAAGTTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTG 691
Query 636 CAAGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACCATAAACGCGACCAGGTTTG 695
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 692 CCCGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACTATAAACGCGACCAGGTTTG 751
Query 696 GAAACAACAGAATCAACCAAGAAAAATCATGTGAAGCAGAATCTGAGAAGAAGAAACTGA 755
||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 752 GAAACAACAGAGTCAATCAAGACAAATCATGTGAAGCAGAAAATGAGAAGAAGAAACTGA 811
Query 756 CCAGTGTATCGAGCAGAGAGAGGTCTACTACGATTGCTACTCCTTCGTCGTCTTCTTCAT 815
| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 812 CGAGTGTATCGAGCAGAGAGAGGTCTAC--C-ATTGCTACTCCTTCGTCGTCTTCTTCGT 868
Query 816 CTCCTTCAGTTCAAGTCCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTT 875
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CTCCTTCAGTTCAAGTTCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTT 928
Query 876 CATCGCCATTGACTCTCGGATCTTCCTCCGTTTGACTATAAATAAAAATGAAATTTGGCT 935
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 929 CATCGCCATTGACTCTCGGATCTTCCTCCGTTTGACTATAAGTAAAA-TGAAATTTGGCT 987
Query 936 TTCGTA-GTTAAATCCATTTTTGATCTCTCAATTAGAGAGACCACTCTGTTTTTCCTTCT 994
|| || | ||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 988 TT-GTTTGGTAAATCCATTTTTGATCTCTCAACTAGAGAGACCACTCTGTATTTC-TTCT 1045
Query 995 CTTAATTGCGAGTGTGCTTTGTAATCTTGTTAATATGCAAACcttcttcttttctttct- 1053
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1046 ATTAATTGCGAGTGTGCTCTGTAATCTTGTTAATATGCAAACCTTTTTCTTTTCTTTTTT 1105
Query 1054 --gtaattttatttacattttcgtttcagattttggacattatttttaCAGTCATATATC 1111
||||| |||||| ||||||| ||||||||||||||| ||||||||||||||| |||||
Sbjct 1106 TTGTAATCTTATTTGCATTTTCTTTTCAGATTTTGGACTTTATTTTTACAGTCAGATATC 1165
Query 1112 AAATTCTCG 1120
|||||||||
Sbjct 1166 AAATTCTCG 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5