BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477180
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1967 0.0
AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfami... 425 4e-118
> AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:30320576-30323780 REVERSE LENGTH=1439
Length=1439
Score = 1967 bits (1065), Expect = 0.0
Identities = 1161/1208 (96%), Gaps = 4/1208 (0%)
Strand=Plus/Plus
Query 25 TCTCCCTCTTCCGCCT-AAGTTCGTTTTCCCTCCTCTTCTGCTCACCGGAAAACACTATA 83
|||| |||||||| || || ||||||||||||||||||||||| ||||||||| |||||
Sbjct 47 TCTCTCTCTTCCGACTCAA-TTCGTTTTCCCTCCTCTTCTGCTTACCGGAAAAGTCTATA 105
Query 84 TCTCCGACGGACCTTCCTCCCTCTAGTTAATTGGACCTCGGGCTCGTGATAATGGCTACT 143
|||||||||||||||| || ||||||||||| ||||||| ||||||||||||||| |||
Sbjct 106 TCTCCGACGGACCTTCTTCTCTCTAGTTAATCAGACCTCGCGCTCGTGATAATGGCAACT 165
Query 144 TTCGGTGCGTCGGCCACCGCCAACA-TCAACCCTAACAAATCCTACGAGGTTACTCCATC 202
|| |||||| | || |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 166 TTTGGTGCGCCTGCTACCGCCAACAGT-AACCCTAACAAATCCTACGAGGTTACTCCATC 224
Query 203 ACCCGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCCGATATACTTGTGGCCAC 262
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 225 ACCGGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCAC 284
Query 263 TTCATGGGACAATCAGGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCTAG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 285 TTCATGGGACAATCAGGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAG 344
Query 323 TGCTCCCAAAGCATCAATATCGCATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGA 382
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGCTCCTAAAGCATCAATATCACATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGA 404
Query 383 TGGAACCACAGTCTTTAGCGGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTC 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGGAACCACAGTCTTTAGCGGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTC 464
Query 443 TGGTGGTCAACCTGTAACCGTTGCTATGCATGATGCTCCTATCGCAGCTATGGCTTGGAT 502
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 465 TGGTGGTCAACCTGTAACTGTTGCTATGCATGAGGGTCCTATCGCAGCTATGGCTTGGAT 524
Query 503 CCCAGGAATGAATCTTCTTGCAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACAC 562
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CCCGGGAATGAATCTCCTTGCAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACAC 584
Query 563 AAGACAGCCAAATCCTGTGCATACCCAACAGCTTCCAGATAAATGTTATACATTGTCTGT 622
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 585 AAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGT 644
Query 623 GAAGCATCCTCTGATGGTTGTCGGAACTGCAGATAGAAATCTGATAGTCTTCAACTTGCA 682
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 645 GAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCA 704
Query 683 AAATCCTCAGACTGAGTTTAAGAGAATTCAATCCCCACTGAAGTACCAGACGAGGTGTGT 742
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 705 AAATCCTCAGACTGAGTTTAAGAGAATCCAATCCCCACTGAAGTACCAGACGAGGTGTGT 764
Query 743 TACTGCCTTCCCTGATCAGCAAGGATTTTTGGTTGGTTCAATTGAGGGGCGGGTTGGTGT 802
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 765 TACTGCCTTCCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATTGAGGGGCGGGTTGGTGT 824
Query 803 CCATCATCTGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGATGG 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TCATCATCTGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGATGG 884
Query 863 AAATGAGATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTGCAAC 922
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 AAATGATATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTGCAAC 944
Query 923 TGCTGGCTCAGATGGTGCTTTCAATTTCTGGGACAAAGACAGTAAACAAAGACTCAAGGC 982
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 945 TGCTGGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAACAAAGACTCAAGGC 1004
Query 983 CATGTCGAGGTGCAATCAGCCAATTCCTTGCAGCTCGTTCAACCATGATGGATCGATATA 1042
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1005 CATGTCGAGGTGCAATCAGCCAATTCCATGCAGCTCGTTCAACCACGATGGATCGATATA 1064
Query 1043 TGCATATGCGGCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGC 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TGCATATGCGGCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGC 1124
Query 1103 AAAAAGCAGCATTTTCTTGCACCTGCCACAGGAAAACGAGGTTAAGGCCAAACCAAGAGT 1162
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1125 AAAAAGCAGCATTTTCTTGCACCTGCCACAGGAAAGCGAGGTTAAGGCCAAGCCAAGAGT 1184
Query 1163 TGGAGCAACCGGCAGAAAATGAGAGTTGCTTAGTCTGATTTCATCGCTAGTGAttttttt 1222
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1185 TGGAGCAACCGGCAGAAAATGAGCGTTGCTTAGTCTGATTTCTTCGCTAGTGATTTTTTT 1244
Query 1223 tttttttt 1230
||||||||
Sbjct 1245 TTTTTTTT 1252
> AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:5453245-5454088 REVERSE LENGTH=423
Length=423
Score = 425 bits (230), Expect = 4e-118
Identities = 336/386 (87%), Gaps = 12/386 (3%)
Strand=Plus/Plus
Query 171 AACCCTAACAAATCCTACGAGGTTACTCCATCACCCGCAGATTCTATTTCGAGCTTAAGT 230
||||||||||| ||||||||| |||||||| || || | || ||||||||||||||||||
Sbjct 40 AACCCTAACAACTCCTACGAGATTACTCCACCAGCCACCGACTCTATTTCGAGCTTAAGT 99
Query 231 TTTAGTCC-AAGAGCCGATATACTTGTGGCCACTTCATGGGACAATCAGGTGAGGTGTTG 289
|||||||| ||| ||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 100 TTTAGTCCAAAG-GCCGATATACTTGTGGCAACTTCATGGGATTGTCAGGTGAGATGTTG 158
Query 290 GGAAATATCCCGTAGTGGA-GCCTCTCTAGCTAGTGCTCCCAAA-GCATCAATATCGCAT 347
||||||| |||||||| || | |||| |||| |||| ||||| | |||||| || |||
Sbjct 159 GGAAATAACCCGTAGT-GACGGCTCTATAGCCAGTG-AACCAAAGGTATCAATGTCTCAT 216
Query 348 GATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGCGGTGGA 407
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 217 GATCAGCCGGTTTTGTGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTACCGGAGGA 276
Query 408 TGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTCTGGTGGTCAACC-TGTAACCGTTGC 466
||||||||||| |||||||||||||| ||||||||||||| |||||| | || | |||||
Sbjct 277 TGTGATAAGCAGGCAAAAATGTGGCCATTGTTGTCTGGTGCTCAACCATCTA-CTGTTGC 335
Query 467 TATGCATGATGCTCCTATCG--CAGCTATGGCTTGGATCCCAGGAATGAATCTTCTTGCA 524
|||||| ||||||||| || ||| || | |||||||||| ||||||||||| ||||
Sbjct 336 TATGCACGATGCTCCTTTCAATCAGATA-G-CTTGGATCCCTGGAATGAATCTCCTTGTT 393
Query 525 ACTGGAAGTTGGGATAAAACTTTGAA 550
|||||||| |||||||||||||||||
Sbjct 394 ACTGGAAGCTGGGATAAAACTTTGAA 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5