BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477182
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80640.1 | Symbols: | Protein kinase superfamily protein | ... 2329 0.0
> AT1G80640.1 | Symbols: | Protein kinase superfamily protein
| chr1:30311666-30314375 FORWARD LENGTH=1734
Length=1734
Score = 2329 bits (1261), Expect = 0.0
Identities = 1521/1637 (93%), Gaps = 56/1637 (3%)
Strand=Plus/Plus
Query 1 TCCACGTCTTATCACCACGTCTGGGGGTTTAGGCACTCTTTGCTGCTTTATTAGCCtttt 60
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 4 TCCACGTCTTATCACCACGTCT--GGGATTAGGCACTCTTTGCTGCTTTATTAGCC-TTT 60
Query 61 ttttCCACCTTTTCATAACTGCCACATGAAGACCAAACACCAAAAGACCTTTGT-C--CT 117
|| |||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||
Sbjct 61 TTGTCCACCTTTTCATAACTGCCACATGAAGACCAAACACCTAAA-ACCTTTGTCCTTCT 119
Query 118 -TCTCTCTGTTTCCCAACTCCAACAGTGTCTCTTGTCTCCATCTCCTCCCCCAGACAAAG 176
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 120 CTCTCTCTGTTTCCCAACTCCAACAGTGTCTCTTGTCTACATCTCCT---CCAGACAAAG 176
Query 177 ATAATCTCTAG-A-TTCCCACCATTTCCATAAAAGAATTAGGTAGACCAAGAA-CAAG-- 231
||||||||||| | || |||||| |||||||||||||||| |||| || ||| | ||
Sbjct 177 ATAATCTCTAGCATTTTTCACCATCTCCATAAAAGAATTAGATAGAACACGAAGC-AGCT 235
Query 232 -C-TActc-tt-tct-t-tatctctctgtttttgtcttttctctgcatgtttttGTGATA 285
| ||||| || ||| | | ||||||| |||||||||||||||||||| ||| | |||||
Sbjct 236 TCGTACTCTTTATCTCTCTCTCTCTCTCTTTTTGTCTTTTCTCTGCATATTTGT-TGATA 294
Query 286 CCAG---ACAAAACTAAATATGTGTCTCCTTGGTCATTTGCTACCCATTTGGGTTCTTGG 342
|||| |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 CCAGACAACAAAATTAAATATGTGTCTCCTTCGTCATTTGCTACCCATTTGGGTTC---- 350
Query 343 TttcttcttcttcttcttcttctCCACTGCTCTTGTTGTTACTAAATCAGAAGAATCTTC 402
||||| | ||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 351 -TTCTTGGT-TTCTTCTTCTTCTCCACTG--C-------TACTAAATCACAAGAATCTTC 399
Query 403 CGTTGTCTA-----C--GT--TTCCCACGAAATCCCCATTTCTCAGGCTTCTCCACGAAT 453
||||||||| | || ||||| |||||||||||||||||||||||||||||||||
Sbjct 400 CGTTGTCTACGTTTCTGGTGCTTCCCCCGAAATCCCCATTTCTCAGGCTTCTCCACGAAT 459
Query 454 GGGAGCTCAATCCCCAGGACCTCCCATTGTTAAAGTGGTGCTTCGCCAGGACTTGAACAA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GGGAGCTCAATCCCCAGGACCTCCCATTGTTAAAGTGGTGCTTCGCCAGGACTTGAACAA 519
Query 514 GAAGATTCTAATTGCTCTTATAGTCTCATCATCACTGCTCTGTGTTACAGTCATGTTCCT 573
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 520 GAAGATTCTAATTGCTCTTATAGTCTCATCATCTCTGCTCTGTGTCACAGTCATGTTCCT 579
Query 574 TTTGTATCTCTTGCTATGGAGGTACA-GACATATGAAGAACAGCTTCACCGGGATCAAAC 632
| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 580 TGTGTATCTCTTGCTATGGAGGTACAGGA-ATATGAAGAACAGCTTCACCGGTATCAAAC 638
Query 633 G-AAATTCCGATTCGGTGAAGAGTGTCACCACGAAACCGATTGTACACAAGATTGATTCT 691
| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 639 GCAAA-TCCGATTCGGTGAAGAGTGTAACCACGAAACCGACTGTACACAAGATTGATTCT 697
Query 692 GTGAGGAAAGGAACCATCCCTGTGTATGAATATCAATTGCTGGAATCTGCAACAAACAAG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTGAGGAAAGGAACCATCCCTGTGTATGAATATCAATTGCTGGAATCTGCAACAAACAAG 757
Query 752 TTTAGTGATAGTAATGTGTTGAGCCGAGGTGGTCGTGGATGCCTTTACAGAGCTTGTCTT 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTTAGTGATAGTAATGTGTTGAGCCGAGGTGGTCGTGGATGCCTTTACAGAGCTTGTCTC 817
Query 812 GATGAAAAGTCCTCTGTCACTGTGAAGAGACTTGATGGTGCTGGGGAGACAGACATTGAA 871
|||||||| ||||| ||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 818 GATGAAAAATCCTCAGTCACTGTGAAGAAACTTGATGGCGGTGGGGAGACAGACATTGAA 877
Query 872 AAACAGTTTGAGACTGAGGTAGATTGGTTGGCTAAGATCAGGCATCAGAACATAGTTTCC 931
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 AAACAGTTTGAGACTGAAGTAGATTGGTTGGCTAAGATCAGGCATCAGAACATAGTTTCC 937
Query 932 CTATTGGGATTTTGCGTATATCGCCAAACGAGTTGTATTGTGTATGAGATGATGCAGAAT 991
||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 938 TTATTGGGGTTTTGCGTATATCGGCAAACGAGTTGTATTGTGTATGAGTTGATGCAGAAT 997
Query 992 GGATCTTTGGAGAGTCAGTTACATGGGCCTAGTCAAGGTTCAGGTTTAACTTGGCAGCTC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GGATCTTTGGAGAGTCAGTTACATGGGCCTAGTCAAGGTTCAGGTTTAACTTGGCAGCTC 1057
Query 1052 AGGATGAAGATAGCAGTTGATATAGCAAGAGGATTAGAGTATCTTCACGAGCATTGCCAT 1111
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1058 AGGATGAAGATAGCGGTTGATATAGCGAGAGGATTAGAGTATCTTCACGAGCATTGCCAT 1117
Query 1112 CCTCCGGTAGTTCACAGAGATTTGAAATCATCTAGCATCCTTCTAGACTCCGATTTCAAT 1171
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1118 CCTCCTGTAGTTCACAGAGATTTGAAATCATCTAGCATCCTTCTGGACTCCGATTTCAAT 1177
Query 1172 GCAAAGATATCAGATTTTGGGTTTGCCACGGTGTTGACCACACAGAATAAAAACCTGATA 1231
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1178 GCAAAGATATCCGATTTTGGGTTTGCCACGGTTTTGACCACGCAGAATAAAAACCTGATA 1237
Query 1232 CACAAAGCTTCTGAGCATCTTCTTGATGGGAAAGTTACAGACAAGAATGATGTCTACTCG 1291
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CACAAGGCTTCTGAGGATCTTCTTGATGGGAAAGTTACAGACAAGAATGATGTCTACTCA 1297
Query 1292 TTTGGAGTGATCCTCCTCGAACTTCTCCTCGGGAAGAAATCAGTGGAGAAACCGTCTTCT 1351
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TTTGGAGTGATCCTGCTCGAACTTCTCCTCGGGAAGAAATCAGTGGAGAAACCGTCTTCT 1357
Query 1352 GAACCAGAATCCATCGTTACCTGGGCTGTACCTAAGCTGAGTGATAGAGCTAATCTTCCA 1411
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1358 GAACCAGAATCCATCGTTACTTGGGCAGTACCTAAGCTGAGTGATAGAGCTAATCTACCA 1417
Query 1412 AACATCTTGGATCCTGCAATCAAAGGAACCATGGATTTGAAGCATCTATATCAGGTAGCT 1471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AACATATTGGATCCTGCAATCAAAGGAACCATGGATTTGAAGCATCTATATCAGGTAGCT 1477
Query 1472 GCGGTAGCGGTGTTGTGTGTACAGCCGGAGCCAAGTTACAGACCACTAATAACCGATGTC 1531
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1478 GCGGTGGCGGTGTTGTGTGTACAGCCGGAGCCAAGTTACAGACCACTTATAACCGATGTC 1537
Query 1532 TTGCACTCACTCATCCCTCTTTTACCAGTAGAACTCGGCGGATCATTGCGGATTTTATAA 1591
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1538 TTGCACTCACTCATCCCTCTTCTACCAGTAGAACTCGGTGGATCATTGCGGATTTTATAA 1597
Query 1592 ATTATC-TTTCCCTTTT 1607
| | | |||||| |||
Sbjct 1598 AAAAACATTTCCCCTTT 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5