BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477184
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80630.1 | Symbols: | RNI-like superfamily protein | chr1:3... 2859 0.0
> AT1G80630.1 | Symbols: | RNI-like superfamily protein | chr1:30308696-30310656
REVERSE LENGTH=1961
Length=1961
Score = 2859 bits (1548), Expect = 0.0
Identities = 1808/1931 (94%), Gaps = 27/1931 (1%)
Strand=Plus/Plus
Query 1 ATCGATGGATTTACCTGAAGAATGTTGGGAACTGATCTGCAAAGCTATCGATGAAGATGA 60
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 38 ATCCATGGATTTACCTGAAGAATGTTGGGAATTAATCTGCAAAGCTATCGATGAAGACGA 97
Query 61 TTATCGATTCCTGGAATCTGTTTCACTCGTATCAACCTTGTTCCTCTCAATCACCAATCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 TTATCGATTCCTGGAATCTGTTTCACTCGTATCAACCTTGTTCCTCTCAATCACCAATCG 157
Query 121 CGTTCGCTCTACTTTCGTCGTCACCGATCGAACTCTTCCTTTTCTCAATCGTCATCTCCT 180
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 158 CGTTCGCTCTACTTTCGTCGTCACCGATCGAGCTGTTCCTTTACTCAATCGTCATCTCCT 217
Query 181 TCGATTCCGGAGCTTGAAGCGAATCAGGTTCTCTGATTTCAATCAGGATCTCAATTCGAT 240
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 218 TCGATTCCGCAACTTGAAGCGAATCAGGTTCTCTGATTTCACTCAGGATCTCAATTCGAT 277
Query 241 TCTTCTTCAGGTTTCGCGTTCCGGTTTGGATTTCGAATCGGTAGATGTGTCGCAAAAGCG 300
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 278 TCTTCTCCAGGTTTCTCGTTCCGGTTTGGATTTCGAATCGGTAGATGTCTCGCAAACGCG 337
Query 301 GTATTTTCCAGATTTTGAGAAGAAGAATGTCAAGGAATTGAAATGTTATGGAGTTGGGGG 360
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 338 CTATTTCCCAGATTTTGAGATGAAGAATGTCAAGGAATTGAAATGTTATGGAGTTGGAGG 397
Query 361 TTTTCGAGATAGCGATCTGGTTTCGATCGGAGTGAATTTTCCGTTCCTAGAGAAGCTGGA 420
|||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 398 TTTTAGTGATAGCGATCTGGTTTCCATCGGAGTGAATTTTCCGTTGCTAGAGAAGCTGGA 457
Query 421 CA-TAGGCTATCCTAACTCTATTCCGAGTCGAGTCTCTGATTTTGGGGTTATCGAGCTTT 479
|| || |||||||||| || | |||||||||||||||||||| ||| |||||||||||||
Sbjct 458 CATTA-GCTATCCTAATTCAAGTCCGAGTCGAGTCTCTGATTCTGGTGTTATCGAGCTTT 516
Query 480 CGTCGAATCTCAAGGGTTTGTTGAAGATTAACATTTCTGGTAATAGTTTCATCACAGATA 539
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CCTCGAATCTCAAAGGTTTGTTGAAGATTAACATTTCTGGTAATAGTTTCATCACAGATA 576
Query 540 AATCTTTGATTGCTCTCTCGCAGAATTGTCTTCTCTTGAGAGAGATAATCTTCCGTGACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AATCTTTGATTGCTCTCTCGCAGAATTGTCTTCTCTTGAGAGAGATAATCTTCCGTGACT 636
Query 600 GTGATTTCATTTCGTCGGATTGCATCAAATTCGTTCTGCGCAATTCGCGGAACTTGGAGT 659
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 637 GTGATTTCATTTCGTCGGATTGCATCAAATTCGTTCTTCGCAATTCCCGTAACTTGGAGT 696
Query 660 CTCTAGCCATCAACGGAATCGGATTGAGGCCGAGGGAGTCTTTATCAAGCGATGCTTTCT 719
|||| || |||||||||||||||||||| |||||||||||||| | || |||||| ||||
Sbjct 697 CTCTTGCGATCAACGGAATCGGATTGAGACCGAGGGAGTCTTTGTTAACCGATGCGTTCT 756
Query 720 TGTTTGCTCGATGTTTGACTGAGCTTGATCTTTCGGATTCGTTTCTATCCGATGAGTTGC 779
|||||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||||
Sbjct 757 TGTTTGCTCGTTGTTTGACTGAGCTTGATCTTTCGGATTCGTTTTTGTCTGATGACTTGC 816
Query 780 TTTGTTTGATTGCTGA-TGCCAAGTTACCTCTAAAGAAGCTTCTTCTCTCCGATTGCCAT 838
| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 817 TCTGTTTGATTGCT-AGTGCTAAGTTACCTCTAAAGAAGCTTCTTCTCTCCGATTGCCAC 875
Query 839 GGTTTTACTTTTGATGGGATCTTGTATCTGCTGG-CTAAGTACCAAACACTAGTTCACTT 897
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 876 GGTTTTACTTTTGATGGGATCTTGTATCTGCTGGAC-AAGTACCAATCACTAGTTCACTT 934
Query 898 GAACCTTAAAGGAGCAAATTTCCTCTCTGATGAGATGGTTATGGAATTAGGGATGTTCTT 957
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 935 GAACCTCAAAGGAGCAAATTTCCTCTCTGATGAGATGGTTATGAAATTAGGGATGTTCTT 994
Query 958 TCGGAGTTTAACCTTTTTGAACCTTAGTTTCTGTTCCAAGCTAACTGGTCTAGCATTCTT 1017
|||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 995 TCGGCGTTTAACCTTTTTGAATCTGAGTTTCTGTTCCAAGTTAACTGGTCTAGCATTCTT 1054
Query 1018 TAGTATCATTGAAAGATGTGTTTCCCTGAGGTGCATGATAATGGTAGGGACGAACTTTGG 1077
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TAGTATTATTGAAAGATGTGTTTCCCTGAGGTGCATGATAATGGTAGGGACGAACTTTGG 1114
Query 1078 AGTGGAAGAATATTCCAAGGA-AC--TGGATATCAAGTCAGGGATCAAGTTTTTGTACTT 1134
||||||||||||| ||||||| || |||| ||||||||||| ||||||||||||||||
Sbjct 1115 AGTGGAAGAATATACCAAGGATACGAAGGATTTCAAGTCAGGGGTCAAGTTTTTGTACTT 1174
Query 1135 TTCTAGAAACCACAATTTGCGCGATGAGTGTCTCGAGAAGATATCACGGCATTGCCCTTT 1194
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1175 ATCTAGAAACCACAATTTGCTCGATGAGTGTCTCGAAAAGATATCACGGCATTGCCCTTT 1234
Query 1195 TTTAGAAAGTCTTGACGTGGCTCAGTGTCCTGGCATCACGAGAGATGGGATTCTTGAAGT 1254
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TATAGAAAGTCTTGACGTAGCTCAGTGTCCTGGCATCACGAGAGATGGGATTCTTGAAGT 1294
Query 1255 TTGGAGGAATTGTGGTGAGCTAAGATCTTTGGATATCAGCAGATGTACGGGCGTAAGGAG 1314
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 1295 TTGGAGGAATTGTGGCAAGCTAAGATCTTTGGACATCAGCAGATGTACGGGCATAAAGAG 1354
Query 1315 TCTTGGTGTAGTAGACTTTGAACTTCCAAAGTTGGAGTCTTTGCGAGCATGTGGAACTTG 1374
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1355 TCTTGGTGTAGTAGACTTTGAGCTTCCAAAGTTGGAGTCTTTGCGAGCATGTGGAACTTG 1414
Query 1375 GATCGATGACGAAGCCTTGGATATGATCAGC-AAAAGATG-CAGAGGGTTGTTGCATCTT 1432
|||||| || |||||||| |||||||||||| ||||| || | |||||||||||||||||
Sbjct 1415 GATCGACGATGAAGCCTTAGATATGATCAGCAAAAAG-TGTC-GAGGGTTGTTGCATCTT 1472
Query 1433 GATCTGCAAGGATGCTTGAATGTGAGTTCAAGAGGGGTGAAGGAAGTTGTGCAGAGCTGC 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GATCTGCAAGGATGCTTGAATGTGAGTTCAAGAGGGGTGAAGGAAGTTGTGCAGAGCTGC 1532
Query 1493 ATACGTTTAAGAGAGATAAACCTCAAGTATTGTGAAGCTGATAATAAAATGTTCACTTGG 1552
||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1533 ATACGTTTAAGAGAGATTAACCTCAAGTATTGTGAAGCTGATAAGAAAATGTACACTTGG 1592
Query 1553 ATGGTTTTTGCAAATCCATCTCTTAGGAAAATCGTACCGCCATGTGGTTTTTCTCCAACT 1612
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1593 ATGGTTTTTGCAAATCCATCTCTTAGGAAAATCGTACCGCCATGTGGGTTTTCTCCAACT 1652
Query 1613 AAAAAACTCGAGAACTTCTTGCTGCGTCATGGATGTGTAATCTCCCAGGATTCTTCTGAG 1672
||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1653 AAAGCACTCAAGAACTTCTTTCTGCGTCATGGATGTGTAGTCTCCCAGGATTCTTCTGAG 1712
Query 1673 TTGCTTTCTATAGCATACCGTGCCAATGGAAGAGATGATGACACATTGACTAGACTGATT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TTGCTTTCTATAGCATACCGTGCCAATGGAAGAGATGATGACACATTGACTAGACTGATT 1772
Query 1733 ATTTGAGCTGATTTGTGAAGAAAAA-GGAATCTGCATACT-GATTAGAATGGAGAAACAG 1790
|||||||| ||||||||||||||| || ||| ||||| | | || ||||||||||||||
Sbjct 1773 ATTTGAGCC-ATTTGTGAAGAAAAAAGGTATCAGCATAATAGTTT-GAATGGAGAAACAG 1830
Query 1791 GGTTTAACCTTTGTTTGGGTTTATATTTTTCACTTTCCATT-TAATAAAATTGTCCAGCC 1849
|| ||||||||| |||| |||||||||| ||||| || || ||||||||||||| ||||
Sbjct 1831 GGGTTAACCTTTCTTTGAGTTTATATTTGTCACTCTCG-TTGTAATAAAATTGTCAAGCC 1889
Query 1850 AAAGCCCTAAGGCAGGCTTGCGTTGATTTGTTTT-CAAATGTTCAGCCATCTTCTTATTC 1908
|||| | ||| | |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1890 AAAGGC--AAG-C----TTGCGTTGATTTTTTTTTCAAATGTTCAGCCATCTTCTTATTC 1942
Query 1909 AATGATAGAAG 1919
|||||||||||
Sbjct 1943 AATGATAGAAG 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5