BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477185
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1543 0.0
> AT1G80610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15800.1);
Has 73 Blast hits to 69 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:30300733-30304033
REVERSE LENGTH=1180
Length=1180
Score = 1543 bits (835), Expect = 0.0
Identities = 1030/1118 (92%), Gaps = 37/1118 (3%)
Strand=Plus/Plus
Query 4 TGAGTTCCGACTATGTCCGGTGAAAACTGGATTCGAGTGGCCATGTCTGACGATTCCTTG 63
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 62 TGAGTTGCGACTATGTCCGGCGAAAACTGGATTCGAGTGGCCATGTCTGACGATTCCATG 121
Query 64 GTGGCGGAGGCGCTTCTTCGGCTCCGCCACTCCGAACCAAAGAAGAGCGTCGACGCGTCT 123
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 122 GTGGCGGAGGCGCTTCTTCGGCTCCGCCACTCCGAACCGAAGAATAGAGTCGACGCGTCC 181
Query 124 CCTCTCAAGCTGAAATGGAGCGTCCGTCAACGGAGATCGAAGAAAGGAGACCAGACGCGA 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 182 CCTCTCAAGCTGAAATGGAGCGTGCGTCAACGGAGATCGAAGAAAGGAGACCAGACGCGA 241
Query 184 GCCAGCCCCACCACACCGCTTTCCTGGAGCGGTACCACGTCTCTTAGCGGCGGAGGCGGC 243
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 242 GCAAGCCCCACCACACCGCTTTCCTGGAGCGGTGCCACGTCTCTTAGCGGCGGAGGCGGC 301
Query 244 AGCGGTGGAAGCGGCGGCGGTGCTACCACCGTGGAAGGCCTTGAGGAGTCTAGCGCCGCC 303
|||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 302 AGCGGTGGAAGCGGCGCCGGTGCTACCACCATGGAAGGCCTCGAGGAGTCTAGCGCCGCC 361
Query 304 GTAAAACCCTTTGAGCCCTTTAGATCTAAGATTTCTCAAACGAGTGCAAT---------A 354
|||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 362 GTAAAACCCTCTGAGCCATTTAGATCTAAGATTTCTCAAACGAGTGCAATAACAACAACA 421
Query 355 ACAACAACAACCCTTTTCAAGAGATCAAGAAAGAAAAAGACTTTGGCTGAGCTTAAAGAA 414
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 422 ACAACAACAACCCTTTTCAAGAGATCAAGAAAGAAGAAGACTTTGGCTGAGCTTAAAGAG 481
Query 415 GAAGAGATCATGCTCTTGAAGGAGAGTAGCGGCCTGAAAAATGAATTGGCAAGTATGCGC 474
||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 482 GAAGAGATCATGCTCTTGAAGGAAAGTAACGGCCTGAAAAATGAATTGGCAAATATGCGC 541
Query 475 GATTTGGTCGAGCAACAAAGAGCAAGAAACAATGCTCTTAAGAAGATGAAGGCTGAATCA 534
|||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 542 GATTTGCTCGAGCAACAAAGAGCAAGAAACACTGCTCTAAAGAAGATGAAGGCTGAATCA 601
Query 535 AAATCTGCCTTATCTTGCAAACACGCTTTCGAAAAAGGTTCCTCCTTCTTGCTCCCTGAC 594
||||||||||||| ||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct 602 CAATCTGCCTTATCGTGCAAACTCACTTTCGAACAAGGTTCTTCCTTCTTGCTCCCTGAC 661
Query 595 CTAAACATGCCTCTAGATAACGACCCGAGCCCTGAAGTTGTCTGCTGAAGGGGGGAGCCA 654
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 662 CTAAACATGCCTCTAGATAACGACCCGAGCCCTGAAGTTGTCTGCTGAACGGGCGAGCCA 721
Query 655 TAAGCACATCATTCTTTTGTTTTTCCCATTACACAAC--TATACCACTATACCTACTCC- 711
||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 722 CAAGCATATCATTCTTTTGTTTTTCCCATTACACAACACTATACCACTATACCTCCTCCG 781
Query 712 -C-ACAAACATGTCTTTT-AACTGTAACTATATGAACATGAAGAACGTAGATTAATCCTA 768
| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 782 TCCACAAACATGTTTTTTGAACTGTAACTATATGAATATGAAGAACGTAGATTAATCCTA 841
Query 769 TATATCCTTCACCCATTTCCCG-TGGACGCTGAAGAAGATTCGCCTGAAGGTGAAGT--T 825
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 842 TATATCCTTCACCCATATCCCGGTGGAAGCTGAAGAAGATTCGCCTGAAGGTGAAGTGGT 901
Query 826 T--A---T--GGTTAAGTGTTTTCTGACA-TATCTTCTTGTTTAGCTGGTAGTAAGATTT 877
| | | |||||||||| || ||| |||||||| |||||||||||||||||||||
Sbjct 902 TCGAGACTATGGTTAAGTGTGTTA--ACAATATCTTCTAGTTTAGCTGGTAGTAAGATTT 959
Query 878 TTGCTCTGCCATTCTCCTAAATGATTCTTATGTTTCTCCCATTTTCTTAGGATGAGATGT 937
||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 960 TTGTTCTGCCAATCTCCTAAATGATTCTTATCTTTCTCCCATTTTATTAGGATGAGATGT 1019
Query 938 AATTATCTACTTAGATAATAGATGTACAC-tttttttttt-GTTC-TTC---CTTATTAT 991
||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||
Sbjct 1020 AATTATCTACTTAGATAATAGATGTACACCTTTTTTTTTTTGTTTGTTCTTTCTTATTAT 1079
Query 992 CTCTAGTAAGATGTATTACGTCGACATTTATAATCAATGTAACACGTTCCAAAACATTTT 1051
|||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 1080 CTCTGGTAAGATGTATTACATCGACATTTATAATCAGTGTAACACGTTCCAAA-CATTTT 1138
Query 1052 ACTAT-TTT-GTAATATGATTGATGGACTATAAAATAT 1087
||||| ||| ||| |||||||||||||||| |||||||
Sbjct 1139 ACTATATTTTGTATTATGATTGATGGACTAAAAAATAT 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5