BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477187 Length=1558 Score E Sequences producing significant alignments: (Bits) Value AT1G80570.2 | Symbols: | RNI-like superfamily protein | chr1:3... 2189 0.0 > AT1G80570.2 | Symbols: | RNI-like superfamily protein | chr1:30290454-30292418 FORWARD LENGTH=1837 Length=1837 Score = 2189 bits (1185), Expect = 0.0 Identities = 1343/1421 (95%), Gaps = 4/1421 (0%) Strand=Plus/Plus Query 96 GATAGACAAATGGATGAATTGCCAGATCATTTGGTTTGGGACATTCTCAGTAAGCTTCAT 155 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 238 GATAGACAAATGGATGAATTGCCAGACCATTTGGTTTGGGACATTCTCAGTAAGCTTCAT 297 Query 156 ACTACCAATGACAGAAACTCGGTTTCACTATCATGCAGGCGTTTCTAT-TCCCTAGACAA 214 |||||| |||||||||||||| ||||||| ||||||| ||||||| | || || ||||| Sbjct 298 ACTACCGATGACAGAAACTCGCTTTCACTCTCATGCAAACGTTTCT-TCTCGCTGGACAA 356 Query 215 CGACCAAAGATACTCTCTTCGGATCGGTTGCGGTTTAGTTCCTGCAACCGATGCATTGCT 274 ||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| Sbjct 357 CGAGCAAAGATACTCTCTGCGGATTGGTTGCGGTTTAGTTCCTGCATCCGATGCATTGCT 416 Query 275 TTCTCTCTGCAGGAGGTTTCCAAATCTATCCAAAGTAGAGATTATATACTCAGGTTGGAT 334 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 417 TTCTCTCTGCAGGAGGTTTCCAAATCTTTCCAAAGTGGAGATTATATACTCAGGCTGGAT 476 Query 335 GTCAAAACTTGGCAAAC-AGCTTGACGATCAAGGCCTTCTTGTCCTCACCACAAACTGTC 393 ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| Sbjct 477 GTCAAAACTTGGCAAACAAG-TTGACGATCAAGGCCTTCTTGTCCTGACCACAAACTGTC 535 Query 394 TTTCTCTCACCGATCTCACTCTCAGCTACTGCACCTTCATCACCGATGTTGGCATTCGCC 453 ||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||| Sbjct 536 ATTCTCTCACTGATCTCACTCTGAGCTTCTGCACCTTCATCACCGATGTTGGCATAGGCC 595 Query 454 ATTTGTCATCGTGTCTAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTG 513 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 ATTTGTCGTCGTGTCCAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTG 655 Query 514 GTTGTGGTGTCTTGTCACTTGCTGTAGGCTGCAAGAAACTCAGGAGACTTCACCTCATTC 573 |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 656 GTTGTGGTGTGTTGTCACTTGCTGTAGGATGCAAGAAACTCAGGAGACTTCATCTCATTC 715 Query 574 GATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAAACTTTAG 633 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 716 GATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAGACTTTAG 775 Query 634 AAGAACTCTGCATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGA 693 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 AAGAACTCTGTATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGA 835 Query 694 ATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTTGATGCCAATTACAGGTACATGA 753 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 836 ATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTAGATGCCAATTACAGGTACATGA 895 Query 754 AGGTTTATGATCAGTTGGATGTGGAACGGTGGCCGAAACAGTTGGTTCCTTGTGACAGTC 813 ||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||||| Sbjct 896 AGGTTTACGACCAGTTAGATGTGGAACGGTGGCCCAAACAGTTGGTTCCCTGTGACAGTC 955 Query 814 TGGTGGAGCTCAGCCTTGGTAACTGCATCATAGCTCCCGGGAGAGGGCTCGCTTGTGTAC 873 |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| | Sbjct 956 TGGTGGAGCTCAGCCTCGGTAACTGCATCATAGCTCCTGGTAGAGGGCTCGCTTGTGTGC 1015 Query 874 TGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGATATGTGTACCGGTGTCAGCGACT 933 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1016 TGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGACATGTGTACCGGTGTCAGCGACT 1075 Query 934 CAGACATCATAGCATTGGTTCAGAAAGCTAAACACCTCAGAAGCATCTCGCTCCGTGTCC 993 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1076 CAGACATCATAGCATTGGTTCAGAAAGCTAGTCACCTAAGAAGCATCTCGCTCCGTGTCC 1135 Query 994 CATCCGATTTCACTCTGCCTCTCTTAAACAACATCACCCTAAGATTAACCGATGAAAGCC 1053 | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1136 CGTCCGATTTTACTCTGCCTCTCTTAAACAACATCACGTTAAGATTAACCGATGAAAGCC 1195 Query 1054 TCAGCGCCATAGCTCGACACTGCTCAAAGCTCGAATCTTTCAAGATCTCTTTCTCAGACG 1113 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1196 TCAGCGCCATAGCTCAACACTGCTCAAAGCTCGAATCTTTCAAGATATCTTTCTCAGACG 1255 Query 1114 GTGAATTCCCTTCCCTCTTCTCTTTCACCCTCCAGGGGATAATCAATCTGATCCAGAAAT 1173 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1256 GTGAATTCCCTTCCCTCTTCTCTTTCACACTCCAGGGGATAATCACTCTGATCCAGAAAT 1315 Query 1174 GCCCAGTACGCGAGCTTTCTCTTGACCACGTGTGCGTTTTCAACGACATGGGGATGGAGG 1233 |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 1316 GCCCAGTACGCGAGCTTTCTCTTGACCATGTGTGTGTATTCAACGACATGGGGATGGAGG 1375 Query 1234 CTCTGTGTTCAGCTCAGAATCTAGAGATCTTAGAGCTTGTCCAATGCCAGGAAGTGAGTG 1293 |||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| | Sbjct 1376 CTCTATGTTCAGCTCAGAAACTTGAGATCTTAGAGCTTGTCCATTGCCAAGAAGTGAGCG 1435 Query 1294 ATGAGGGGTTAATTCTTGTGAGCCAGTTTCCTTCTCTCAGTGTGTTGAAACTATCAAAAT 1353 |||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1436 ATGAGGGGTTGATTCTGGTGAGCCAGTTTCCTTCTCTCAATGTGTTGAAGTTATCAAAAT 1495 Query 1354 GTCTGGGAGTCACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGCTAGAGTTGC 1413 |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1496 GTCTGGGAGTGACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGTTGGAGTTGC 1555 Query 1414 TTGTGGTCGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTG 1473 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 TTGTTGTTGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTG 1615 Query 1474 TATCTTTTAAGTAAGATTTGTCATGGATGTACTGAGATCGT 1514 | || |||||| ||||||||||||||||||| ||||||||| Sbjct 1616 TCTCGTTTAAGCAAGATTTGTCATGGATGTATTGAGATCGT 1656 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76907234940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5