BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477187
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80570.2 | Symbols: | RNI-like superfamily protein | chr1:3... 2189 0.0
> AT1G80570.2 | Symbols: | RNI-like superfamily protein | chr1:30290454-30292418
FORWARD LENGTH=1837
Length=1837
Score = 2189 bits (1185), Expect = 0.0
Identities = 1343/1421 (95%), Gaps = 4/1421 (0%)
Strand=Plus/Plus
Query 96 GATAGACAAATGGATGAATTGCCAGATCATTTGGTTTGGGACATTCTCAGTAAGCTTCAT 155
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GATAGACAAATGGATGAATTGCCAGACCATTTGGTTTGGGACATTCTCAGTAAGCTTCAT 297
Query 156 ACTACCAATGACAGAAACTCGGTTTCACTATCATGCAGGCGTTTCTAT-TCCCTAGACAA 214
|||||| |||||||||||||| ||||||| ||||||| ||||||| | || || |||||
Sbjct 298 ACTACCGATGACAGAAACTCGCTTTCACTCTCATGCAAACGTTTCT-TCTCGCTGGACAA 356
Query 215 CGACCAAAGATACTCTCTTCGGATCGGTTGCGGTTTAGTTCCTGCAACCGATGCATTGCT 274
||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 357 CGAGCAAAGATACTCTCTGCGGATTGGTTGCGGTTTAGTTCCTGCATCCGATGCATTGCT 416
Query 275 TTCTCTCTGCAGGAGGTTTCCAAATCTATCCAAAGTAGAGATTATATACTCAGGTTGGAT 334
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 417 TTCTCTCTGCAGGAGGTTTCCAAATCTTTCCAAAGTGGAGATTATATACTCAGGCTGGAT 476
Query 335 GTCAAAACTTGGCAAAC-AGCTTGACGATCAAGGCCTTCTTGTCCTCACCACAAACTGTC 393
||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 477 GTCAAAACTTGGCAAACAAG-TTGACGATCAAGGCCTTCTTGTCCTGACCACAAACTGTC 535
Query 394 TTTCTCTCACCGATCTCACTCTCAGCTACTGCACCTTCATCACCGATGTTGGCATTCGCC 453
||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 536 ATTCTCTCACTGATCTCACTCTGAGCTTCTGCACCTTCATCACCGATGTTGGCATAGGCC 595
Query 454 ATTTGTCATCGTGTCTAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTG 513
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATTTGTCGTCGTGTCCAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTG 655
Query 514 GTTGTGGTGTCTTGTCACTTGCTGTAGGCTGCAAGAAACTCAGGAGACTTCACCTCATTC 573
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 656 GTTGTGGTGTGTTGTCACTTGCTGTAGGATGCAAGAAACTCAGGAGACTTCATCTCATTC 715
Query 574 GATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAAACTTTAG 633
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 716 GATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAGACTTTAG 775
Query 634 AAGAACTCTGCATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGA 693
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAGAACTCTGTATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGA 835
Query 694 ATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTTGATGCCAATTACAGGTACATGA 753
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 ATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTAGATGCCAATTACAGGTACATGA 895
Query 754 AGGTTTATGATCAGTTGGATGTGGAACGGTGGCCGAAACAGTTGGTTCCTTGTGACAGTC 813
||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 896 AGGTTTACGACCAGTTAGATGTGGAACGGTGGCCCAAACAGTTGGTTCCCTGTGACAGTC 955
Query 814 TGGTGGAGCTCAGCCTTGGTAACTGCATCATAGCTCCCGGGAGAGGGCTCGCTTGTGTAC 873
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
Sbjct 956 TGGTGGAGCTCAGCCTCGGTAACTGCATCATAGCTCCTGGTAGAGGGCTCGCTTGTGTGC 1015
Query 874 TGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGATATGTGTACCGGTGTCAGCGACT 933
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 TGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGACATGTGTACCGGTGTCAGCGACT 1075
Query 934 CAGACATCATAGCATTGGTTCAGAAAGCTAAACACCTCAGAAGCATCTCGCTCCGTGTCC 993
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1076 CAGACATCATAGCATTGGTTCAGAAAGCTAGTCACCTAAGAAGCATCTCGCTCCGTGTCC 1135
Query 994 CATCCGATTTCACTCTGCCTCTCTTAAACAACATCACCCTAAGATTAACCGATGAAAGCC 1053
| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1136 CGTCCGATTTTACTCTGCCTCTCTTAAACAACATCACGTTAAGATTAACCGATGAAAGCC 1195
Query 1054 TCAGCGCCATAGCTCGACACTGCTCAAAGCTCGAATCTTTCAAGATCTCTTTCTCAGACG 1113
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1196 TCAGCGCCATAGCTCAACACTGCTCAAAGCTCGAATCTTTCAAGATATCTTTCTCAGACG 1255
Query 1114 GTGAATTCCCTTCCCTCTTCTCTTTCACCCTCCAGGGGATAATCAATCTGATCCAGAAAT 1173
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1256 GTGAATTCCCTTCCCTCTTCTCTTTCACACTCCAGGGGATAATCACTCTGATCCAGAAAT 1315
Query 1174 GCCCAGTACGCGAGCTTTCTCTTGACCACGTGTGCGTTTTCAACGACATGGGGATGGAGG 1233
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1316 GCCCAGTACGCGAGCTTTCTCTTGACCATGTGTGTGTATTCAACGACATGGGGATGGAGG 1375
Query 1234 CTCTGTGTTCAGCTCAGAATCTAGAGATCTTAGAGCTTGTCCAATGCCAGGAAGTGAGTG 1293
|||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| |
Sbjct 1376 CTCTATGTTCAGCTCAGAAACTTGAGATCTTAGAGCTTGTCCATTGCCAAGAAGTGAGCG 1435
Query 1294 ATGAGGGGTTAATTCTTGTGAGCCAGTTTCCTTCTCTCAGTGTGTTGAAACTATCAAAAT 1353
|||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1436 ATGAGGGGTTGATTCTGGTGAGCCAGTTTCCTTCTCTCAATGTGTTGAAGTTATCAAAAT 1495
Query 1354 GTCTGGGAGTCACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGCTAGAGTTGC 1413
|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1496 GTCTGGGAGTGACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGTTGGAGTTGC 1555
Query 1414 TTGTGGTCGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTG 1473
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TTGTTGTTGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTG 1615
Query 1474 TATCTTTTAAGTAAGATTTGTCATGGATGTACTGAGATCGT 1514
| || |||||| ||||||||||||||||||| |||||||||
Sbjct 1616 TCTCGTTTAAGCAAGATTTGTCATGGATGTATTGAGATCGT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76907234940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5