BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477194 Length=1455 Score E Sequences producing significant alignments: (Bits) Value AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1995 0.0 > AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:30284946-30286704 REVERSE LENGTH=1759 Length=1759 Score = 1995 bits (1080), Expect = 0.0 Identities = 1175/1222 (96%), Gaps = 2/1222 (0%) Strand=Plus/Plus Query 1 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCGCTCTCATGTTACAGCAACGAT 60 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 121 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCTCTCACATGTTACAGCAACGAT 180 Query 61 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAAAGAATCCGGATTCAGACATACC 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAGAGAATCCGGATTCAGACATACC 240 Query 121 ACCGAGACATTCAATCGGATGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAACTTGT 180 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | Sbjct 241 ACCGAGACATTCAATCGGGTGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAATTTCT 300 Query 181 TGGGCTCTGATTAACCGCATGATCGGAAACCCGGAATCTCTGCCGAATCACGTCACGTTC 240 |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 301 TGGGCTTTGATTAACCGCATGATCGGAAACACGGAATCTGTGCCGAATCACGTCACGTTT 360 Query 241 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 420 Query 301 CATAAATTGGATGATTTCAATTTGAGAGATGAAACATCTTTTTATAATCTGGTCGATGCG 360 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 GATAAATTGGATGATTTCAATTTGAGAGATGAAACATCATTTTATAATCTGGTCGATGCG 480 Query 361 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTGATT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 481 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTCATT 540 Query 421 GCTCATGGTTTTAGTGTTAGTAATACTAAGATCCACAATCTGATTCTTCGTGGGTGGTCG 480 | | ||||||||||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct 541 GGTAATGGTTTTAGTGTGAGTAATACTAAGATTCATAATCTGATTCTTCGTGGGTGGTCG 600 Query 481 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGGACAAGATGGATACTGAAGGTG-T 539 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | Sbjct 601 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGAAGAAGATGGATACTGAAGGTGTT 660 Query 540 AGCTAAGGATCTGTTTTCGTACTCTATTTACATGGATATCATGTGCAAGAGCGGTAAACC 599 | |||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 661 A-CTAAGGATCTTTTTTCGTATTCCATTTACATGGATATCATGTGCAAGAGCGGGAAACC 719 Query 600 GTGGAAAGCTGTGAAATTGTATAAGGAAATGAAGAGTAGAAGGATCAAACTTGATGTGGT 659 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 720 GTGGAAAGCTGTGAAGTTGTATAAGGAAATGAAGAGTAGAAGGATGAAACTCGATGTGGT 779 Query 660 TGCGTATAACACTGTCATTCGGGCCATTGGAGCGTCGCAAGGTGTTGAATTCAGTATCAG 719 ||| ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 780 TGCTTATAACACTGTGATTCGAGCCATTGGAGCGTCGCAAGGTGTTGAATTCGGTATCAG 839 Query 720 GGTGTTTCGGGAGATGAGAGAAAGAGGTTGTGAACCTAATGTTGCCACTCATAACACAAT 779 ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 840 GGTATTTCGGGAGATGAGGGAAAGAGGTTGTGAACCTAATGTTGCGACTCATAACACAAT 899 Query 780 CATTAAGCTTCTATGTGAAGATGGGAGGATGAGGGACGCGTATCGGATGCTTGATGAGAT 839 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 900 CATTAAGCTTCTATGTGAAGACGGGAGGATGAGAGACGCGTATCGGATGCTTGATGAGAT 959 Query 840 GCCTAAGAAAGGTTTTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCACGTTTGGA 899 |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 960 GCCTAAGAGAGGTTGTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCCCGTTTGGA 1019 Query 900 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 1079 Query 960 AATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTGCAGCCGGT 1019 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1080 GATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTTCAGCCGGT 1139 Query 1020 TTTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCATATAA 1079 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1140 ATTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCGTATAA 1199 Query 1080 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1259 Query 1140 GGAAATGATCGAAAGAGGGCTATCTCCAAGAAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1199 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1260 GGAAATGATCGAAAGAGGGCTATCTCCAAGGAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1319 Query 1200 GGACGAAACGCTTGTTTGTAGA 1221 ||||||||||||||| |||||| Sbjct 1320 GGACGAAACGCTTGTCTGTAGA 1341 Score = 267 bits (144), Expect = 3e-70 Identities = 205/234 (88%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 1225 CCTTTTGGTTGAAGAAATGTCCCCAAGGTGTACCATCATTT-CCATAAAGTGCCTGTGTT 1283 |||||||| || |||||| |||||||||| || |||| ||| |||||||||| || |||| Sbjct 1414 CCTTTTGGATGGAGAAATCTCCCCAAGGTATATCATC-TTTGCCATAAAGTGGCTTTGTT 1472 Query 1284 TCAACTCAAAACTGAAGAGAAAACACTGAGGTTCATTGAGAAATTTGGTGGTGTTGTGTG 1343 |||||||||||| || |||||||||||||||||||||||||||| |||| | |||||||| Sbjct 1473 TCAACTCAAAACCGAGGAGAAAACACTGAGGTTCATTGAGAAATCTGGTTGAGTTGTGTG 1532 Query 1344 TCTCAAGCCAAAATCCGAATATTTGGTTTTGGAAGATGGTTTGTCGCCTCCTA-AGGATA 1402 ||| |||||||| |||||| ||||||||||| ||||||||||||||||||||| | | | Sbjct 1533 TCTTAAGCCAAATTCCGAAGATTTGGTTTTGAAAGATGGTTTGTCGCCTCCTATATG-TG 1591 Query 1403 TTTTG-TAACGTACACGTACCATTTGTAATTCACTCTCCAACTTAAtttttttt 1455 || | || | || |||||||||||||||||||||||| ||||||||||||||| Sbjct 1592 TTCTACTA-CATATACGTACCATTTGTAATTCACTCTCTAACTTAATTTTTTTT 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71736578805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5