BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477194
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1995 0.0
> AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:30284946-30286704 REVERSE LENGTH=1759
Length=1759
Score = 1995 bits (1080), Expect = 0.0
Identities = 1175/1222 (96%), Gaps = 2/1222 (0%)
Strand=Plus/Plus
Query 1 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCGCTCTCATGTTACAGCAACGAT 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 121 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCTCTCACATGTTACAGCAACGAT 180
Query 61 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAAAGAATCCGGATTCAGACATACC 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAGAGAATCCGGATTCAGACATACC 240
Query 121 ACCGAGACATTCAATCGGATGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAACTTGT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 241 ACCGAGACATTCAATCGGGTGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAATTTCT 300
Query 181 TGGGCTCTGATTAACCGCATGATCGGAAACCCGGAATCTCTGCCGAATCACGTCACGTTC 240
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 301 TGGGCTTTGATTAACCGCATGATCGGAAACACGGAATCTGTGCCGAATCACGTCACGTTT 360
Query 241 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 420
Query 301 CATAAATTGGATGATTTCAATTTGAGAGATGAAACATCTTTTTATAATCTGGTCGATGCG 360
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GATAAATTGGATGATTTCAATTTGAGAGATGAAACATCATTTTATAATCTGGTCGATGCG 480
Query 361 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTGATT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTCATT 540
Query 421 GCTCATGGTTTTAGTGTTAGTAATACTAAGATCCACAATCTGATTCTTCGTGGGTGGTCG 480
| | ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 541 GGTAATGGTTTTAGTGTGAGTAATACTAAGATTCATAATCTGATTCTTCGTGGGTGGTCG 600
Query 481 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGGACAAGATGGATACTGAAGGTG-T 539
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 601 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGAAGAAGATGGATACTGAAGGTGTT 660
Query 540 AGCTAAGGATCTGTTTTCGTACTCTATTTACATGGATATCATGTGCAAGAGCGGTAAACC 599
| |||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 661 A-CTAAGGATCTTTTTTCGTATTCCATTTACATGGATATCATGTGCAAGAGCGGGAAACC 719
Query 600 GTGGAAAGCTGTGAAATTGTATAAGGAAATGAAGAGTAGAAGGATCAAACTTGATGTGGT 659
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 720 GTGGAAAGCTGTGAAGTTGTATAAGGAAATGAAGAGTAGAAGGATGAAACTCGATGTGGT 779
Query 660 TGCGTATAACACTGTCATTCGGGCCATTGGAGCGTCGCAAGGTGTTGAATTCAGTATCAG 719
||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 780 TGCTTATAACACTGTGATTCGAGCCATTGGAGCGTCGCAAGGTGTTGAATTCGGTATCAG 839
Query 720 GGTGTTTCGGGAGATGAGAGAAAGAGGTTGTGAACCTAATGTTGCCACTCATAACACAAT 779
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 GGTATTTCGGGAGATGAGGGAAAGAGGTTGTGAACCTAATGTTGCGACTCATAACACAAT 899
Query 780 CATTAAGCTTCTATGTGAAGATGGGAGGATGAGGGACGCGTATCGGATGCTTGATGAGAT 839
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 900 CATTAAGCTTCTATGTGAAGACGGGAGGATGAGAGACGCGTATCGGATGCTTGATGAGAT 959
Query 840 GCCTAAGAAAGGTTTTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCACGTTTGGA 899
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GCCTAAGAGAGGTTGTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCCCGTTTGGA 1019
Query 900 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 1079
Query 960 AATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTGCAGCCGGT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 GATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTTCAGCCGGT 1139
Query 1020 TTTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCATATAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 ATTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCGTATAA 1199
Query 1080 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1259
Query 1140 GGAAATGATCGAAAGAGGGCTATCTCCAAGAAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 GGAAATGATCGAAAGAGGGCTATCTCCAAGGAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1319
Query 1200 GGACGAAACGCTTGTTTGTAGA 1221
||||||||||||||| ||||||
Sbjct 1320 GGACGAAACGCTTGTCTGTAGA 1341
Score = 267 bits (144), Expect = 3e-70
Identities = 205/234 (88%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 1225 CCTTTTGGTTGAAGAAATGTCCCCAAGGTGTACCATCATTT-CCATAAAGTGCCTGTGTT 1283
|||||||| || |||||| |||||||||| || |||| ||| |||||||||| || ||||
Sbjct 1414 CCTTTTGGATGGAGAAATCTCCCCAAGGTATATCATC-TTTGCCATAAAGTGGCTTTGTT 1472
Query 1284 TCAACTCAAAACTGAAGAGAAAACACTGAGGTTCATTGAGAAATTTGGTGGTGTTGTGTG 1343
|||||||||||| || |||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 1473 TCAACTCAAAACCGAGGAGAAAACACTGAGGTTCATTGAGAAATCTGGTTGAGTTGTGTG 1532
Query 1344 TCTCAAGCCAAAATCCGAATATTTGGTTTTGGAAGATGGTTTGTCGCCTCCTA-AGGATA 1402
||| |||||||| |||||| ||||||||||| ||||||||||||||||||||| | | |
Sbjct 1533 TCTTAAGCCAAATTCCGAAGATTTGGTTTTGAAAGATGGTTTGTCGCCTCCTATATG-TG 1591
Query 1403 TTTTG-TAACGTACACGTACCATTTGTAATTCACTCTCCAACTTAAtttttttt 1455
|| | || | || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1592 TTCTACTA-CATATACGTACCATTTGTAATTCACTCTCTAACTTAATTTTTTTT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5