BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477198
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80510.1 | Symbols: | Transmembrane amino acid transporter ... 2883 0.0
> AT1G80510.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:30272849-30274793 FORWARD LENGTH=1945
Length=1945
Score = 2883 bits (1561), Expect = 0.0
Identities = 1793/1903 (94%), Gaps = 23/1903 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTATCGCTCGCCGACGAGGCAGGAAGGACGACCGATTGAGACGTTGACCCTTA 60
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 37 TCTCTGTGTATCGCTCGCCGACGAGGCAGGAAGGACGACCAATTGAGACGTTGACCCTTA 96
Query 61 AGCCGATTTG----AT-T-T-T-T-TGAACAATCT-tctctctc-t-ctc---ACTCATA 105
| |||||||| || | | | | | | ||| |||||||| | || | |||||
Sbjct 97 ATCCGATTTGAACAATCTCTCTCTCT-CTCTCTCTCTCTCTCTCTTGGTCGAGATTCATA 155
Query 106 AAAGTCTCTTCTTTCGTCTGCTTCGATCTCGGATTATCTGTAAGTTTATTTATATTC-TT 164
||||||||||||||||||| |||||||||||||| ||| |||||||| | | ||| ||
Sbjct 156 AAAGTCTCTTCTTTCGTCTTCTTCGATCTCGGATAATCACAAAGTTTATCT-TCTTCTTT 214
Query 165 CTTTaaaaaaaaaaaaaaaaaaaaaCAGATCTGGCGAATGGATAGCAGTTACTCTGTAAT 224
|||| ||||| |||| | | | ||||||| |||||||||||||||||||||||| ||
Sbjct 215 CTTTTTTAAAAATAAAATCAGAGAGCAGATCTTGCGAATGGATAGCAGTTACTCTGTCAT 274
Query 225 TTCCAAAACTTCTTACGTTGAGCTACAGAAACCGACGAATAAT-GGAAACCCCAGAAACA 283
|||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||
Sbjct 275 TTCCAAAACTTCTTACGTTGAGTTACAGAAACCGACGGTTAATGGGAAA-CCCAGAAACA 333
Query 284 AGTTGCTTCCTTCTGATGAAGAAAGCTTCGTTAACGATTTTGACGATACCCGTAATGGTG 343
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 334 AGTTGCTTCCTTCTGATGAAGAAAGCTTCGTCAATGATTTTGACGATGCCCGTAATGGTG 393
Query 344 TTGGCGGTGAAGATGGTGATGATCTCGATTTCGATGTCGCTGATTACTCACTCGTTCATG 403
|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 394 TTGGGGGTGAAGATGCTGATGATCTCGATTTCGATGTCGCTGATTACCCACTCGTTCATG 453
Query 404 GCAAATCATCCAATCAAGGATCTGGGATCTACGGTGCCGTTTTTAATCTCACCACTTCCA 463
|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct 454 GCAAATCATCCAATCAAGGATCTGGGATTTACGGTGCTGTTTTCAATCTCACCACTTCTA 513
Query 464 TTATCGGCGCCGGGATCATGGCATTGCCCGCCACCATGAAAGTTCTCGGCTTGGTTCTAG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 TTATCGGCGCCGGGATCATGGCATTGCCCGCCACCATGAAAGTTCTCGGCTTGGTTCTAG 573
Query 524 GGTTTCTTTTGATTATCCTCATGGCTATTTTGTCTGAGATTAGTGTTGAGCTTTTGATTA 583
||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 574 GGTTTGTTTTGATTATCCTCATGGCTCTTTTGTCTGAGATTAGTGTTGAGCTTCTGGTTA 633
Query 584 GATTTTCAGTTCTTTACAAGTCCAAATCTTACGGCGAGGTTGTTCAATTCGCTTTGGGGA 643
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 634 GATTTTCTGTTCTTTACAAGTCCAAATCCTACGGCGAGGTTGTTCAATTCGCTTTGGGGA 693
Query 644 AAACCGCTAGGGTTTTGTCTGAGATTTGTATCATTGTCAACAATGGTGGCGTTCTCGTTG 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AAACCGCTAGGGTTTTGTCTGAGATTTGTATCATTGTCAACAATGGTGGCGTTCTCGTTG 753
Query 704 TTTACTTGATTATTATGGGCGATGTTATGTCTGGTTCTCTTCATCACATTGGGGTTTTGG 763
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 754 TTTACTTGATTATTATGGGCGATGTTATGTCTGGTTCTCTCCATCACATTGGGGTTTTGG 813
Query 764 ATCAATGGTTAGGGAATGGATTCTGGGATCACCGTAAAGTTTTGATTTTGATTGTTATGG 823
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 814 ATCAATGGTTAGGGAATGGGTTCTGGGATCACCGTAAAGTGTTGATTTTGATTGTTATGG 873
Query 824 TCATCTTCTTGGCTCCTCTCTGTGCTTTGAACAAGATTGATTCCTTGAGCGTTACATCTG 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 874 TCATCTTCTTGGCTCCTCTCTGTGCTTTGAACAAGATTGATTCCTTGAGCGTTACATCAG 933
Query 884 CTGCTTCTGTTGCTCTTGCTGTTGTCTTTGTGGTTGTCTGTTTCGCTGTCGCCACGATCA 943
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 934 CTGCTTCTGTTGCTCTTGCTGTTGTCTTTGTGGTTGTCTGTTTTGTTGTCGCCACCATCA 993
Query 944 AGCTTATCGAAGGAACTATCGACCCTCCAAGGATGAGTCCTGATTTTGGTTCCAAACAAG 1003
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 994 AGCTTATCGAAGGAACTATCGACCCTCCAAGGTTGTCTCCTGACTTTGGTTCCAAACAAG 1053
Query 1004 CGATCTTGGATCTTCTTGTGGTCATTCCAATTATGTCAAACGCATATGTTTGTCACTTCA 1063
| || ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1054 CAATTTTGGACCTTCTTGTGGTCATTCCGATTATGTCAAACGCATACGTTTGTCACTTCA 1113
Query 1064 ATGTTCAGCCGATATACAATGAGCTCGAAGGTCGATCACCGCATAAGATGAACCGAGTTG 1123
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1114 ATGTTCAGCCGATATACAACGAGCTTGAAGGTCGATCACCTCATAAGATGAACCGAGTTG 1173
Query 1124 GGAGAATCACAACAGCCATTTGTGTTGTTGTCTACGCTTCAACTGCTATATCGGGTTATC 1183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1174 GGAGAATCACAACAGCCATTTGTGTTGTTGTCTACGCTTCAACTGCTGTATCGGGTTATC 1233
Query 1184 TCCTCTTCGGCAAGGACACCGAATCAGATATCTTGACCAACTTTGATCAAGATCTCGGTA 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TCCTCTTCGGCAAGGACACCGAATCAGATATCTTGACCAACTTTGATCAAGATCTCGGTA 1293
Query 1244 TCCGGTTCAGCTCTGCGGTGAATTACATTGTCAGAATCGGTTACATTCTTCATCTAGTTC 1303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1294 TCCGGTTCAGCTCTGCGGTGAATTACATTGTCAGAATCGGCTACATTCTTCATCTAGTTC 1353
Query 1304 TCGTCTTCCCCGTGATCCATTTCTCCTTGAGAGAAACCGTCAATACCTTACTGTTTGAAG 1363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TCGTCTTCCCTGTGATCCATTTCTCCTTGAGAGAAACCGTCAATACCTTACTGTTTGAAG 1413
Query 1364 GCTCGCCTCCTCTATCCGAAAGCAAAAAGAGATCTTTGGGACTCACAGTGGTCTTGCTGG 1423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1414 GCTCGCCTCCTCTATCCGAAAGCAAAAAGAGATCTTTGGGACTCACTGTGGTCTTGCTGG 1473
Query 1424 CTCTTATTTACATTGGCTCGACGATGATCCCAAACATATGGACTGCTTTCAAATTCACAG 1483
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1474 CTCTTATTTACATTGGCTCAACGATGATACCAAACATATGGACTGCTTTCAAATTCACAG 1533
Query 1484 GCGCAACATCAGCGGTTTCGCTTGGTTTTACGTTCCCTGCTCTTATCGCATTACGGTTAG 1543
||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1534 GCGCAACATCAGCTGTTTCACTTGGTTTTACATTCCCTGCTCTGATCGCATTGCGGTTAG 1593
Query 1544 GGAAACAGAGCAATTCGCTAAGCTTCGTGGAAAGATCAGTGTCATGGCTGATGCTAATCT 1603
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 GGAAACAGAGCAATTCGTTAAGCTTCGTGGAAAGATCAGTGTCATGGCTGATGCTAATCT 1653
Query 1604 TGGCCGTAGTGGTTAGCATTGTTGGAACCATTGGCAACATTTACAGCCTCGAGAGCAAAT 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 TGGCCGTAGTGGTTAGCATTGTTGGAACCATTGGCAACATTTACAGCCTCGAGAGCAAAT 1713
Query 1664 CAGATTGATACTTTATAGCAGTGTTTTTCAGGATCTTGTAGATTTATACAATCAGAGATT 1723
||||||||||||| |||||||| ||| |||||||||||||||||||| | |||||||||
Sbjct 1714 CAGATTGATACTT-ATAGCAGT-TTTC-CAGGATCTTGTAGATTTATATAGTCAGAGATT 1770
Query 1724 CTCAGTCCAATACCGAACCGGAAATCTTCAGCGACTGTTACATGCACCTTAAGGATGTCG 1783
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1771 CTCAGTCCAATACCGAACCGGAAATCTTCAGCGACTGCTACATGCACCTTTAGGATGTCG 1830
Query 1784 ATCAATGGCGTTTGTTCAGGTTAAGCCTAAAGATTTCTGGTTTGTGAATTATATGTATAC 1843
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1831 ATCAATGGCGTTTGTTCAGGCTAAGCCTAAAGATTTCCGGTTTGTGAATTATATGTATAC 1890
Query 1844 AGACACCTGATTCTTATGATATTATAATATATACGCATTTTTT 1886
|||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1891 AGACACCTGATTCTTATGATTTTATTATATATACGCATTTTTT 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93373013700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5