BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477206
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80460.1 | Symbols: NHO1, GLI1 | Actin-like ATPase superfami... 2832 0.0
> AT1G80460.1 | Symbols: NHO1, GLI1 | Actin-like ATPase superfamily
protein | chr1:30246768-30249253 REVERSE LENGTH=1959
Length=1959
Score = 2832 bits (1533), Expect = 0.0
Identities = 1721/1810 (95%), Gaps = 20/1810 (1%)
Strand=Plus/Plus
Query 83 CAACAAAGCATTATTCTTCACCTTTACCACACaaa-a-aaaaaagaaagagaaatggcaa 140
||||||||||| |||||||||||||||| | ||| | |||||| ||||| |||||||||
Sbjct 149 CAACAAAGCATCGTTCTTCACCTTTACCA-A-AAAGATAAAAAA-AAAGAAAAATGGCAA 205
Query 141 aagaaaaTGGTTTTATAGGATCAATCGATCAAGGAACCACCAGCACCAGATTCATCATCT 200
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 AAGAAAATGGATTTATAGGATCAATCGATCAAGGAACCACCAGCACCAGATTCATCATTT 265
Query 201 ACGACCACGATGCTCGTGCTGTTGCATCTCATCAAGTCGAATTCACTCAGTTCTATCCCG 260
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 266 ACGACCACGATGCTCGTCCTGTTGCTTCTCATCAAGTCGAGTTCACTCAGTTCTATCCCG 325
Query 261 AAGCTGGATGGGTGGAACACGATCCAATGGAGATACTGGAAAGTGTGAAAGTGTGCATTG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 AAGCTGGATGGGTGGAACACGATCCAATGGAGATACTGGAAAGTGTGAAAGTGTGCATTG 385
Query 321 CAAAGGCTCTCGACAAAGCCACTGCCGATGGACACAACGTCGACGGTGGCTTGAAGGCCA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CAAAGGCTCTCGACAAAGCCACTGCCGATGGACACAACGTCGACGGTGGCTTGAAGGCCA 445
Query 381 TTGGGCTCACAGATCAGAGAGAGACAACTGTTGTTTGGAGCAAATCCACTGGCCTTCCTC 440
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 446 TTGGGCTTACAGATCAGAGAGAGACTACTGTTGTTTGGAGCAAATCCACTGGCCTTCCTC 505
Query 441 TCCACAAAGCTATTGTGTGGATGGATGCTCGTACCAGTTCCATCTGCAGGAGACTAGAGA 500
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 506 TCCACAAGGCTATTGTCTGGATGGATGCTCGTACCAGCTCCATCTGCAGGAGACTAGAGA 565
Query 501 AAGAACTCTCGGGAGGAAGATCCCATTTTGTGGAGTCTTGTGGCTTGCCCATAAGCACCT 560
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 566 AAGAACTCTCGGGAGGAAGATCCCATTTTGTGGAGTCTTGCGGCTTGCCAATAAGCACAT 625
Query 561 ACTTCTCCGCCATGAAACTGCTTTGGCTCATGGAGAATGTGGATGATGTCAAAGACGCTA 620
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 ACTTCTCTGCCATGAAGCTGCTTTGGCTCATGGAGAATGTGGATGATGTCAAAGACGCTA 685
Query 621 TCAAGAAAGGGGATGCCATCTTTGGCACTATCGACACATGGTTGATCTGGAACATGACTG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TCAAGAAAGGGGATGCCATCTTTGGCACTATCGACACATGGTTGATCTGGAACATGACTG 745
Query 681 GCGGTGTCAATGGCGGCCTACATGTCACTGATGTCACCAATGCTTCTCGCACCATGCTCA 740
||||| ||||||||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 746 GCGGTATCAATGGCGGCCTTCATGTCACTGATGTCACCAATGCTTCACGGACAATGCTCA 805
Query 741 TGAACCTCAAAACCTTGAACTGGGACCAGGACACTTTGAAGACACTTGGCATACCGGCTG 800
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TGAACCTCAAAACCTTGAGCTGGGACCAGGACACTTTGAAGACACTTGGCATACCGGCTG 865
Query 801 AAATATTGCCTAAGATTGTGAGCAATTCAGAAGTGATTGGAGAAATCTGCAAAGGCTGGC 860
|||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 866 AAATCTTGCCCAAGATTGTCAGCAATTCAGAAGTGATTGGAGAGATCTGCAAAGGCTGGC 925
Query 861 CTATTCCCGGTATCAAGATTGCTGGATGTCTTGGTGATCAGCATGCTGCAATGCTGGGAC 920
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 926 CTATTCCCGGTATCAAGATTGCTGGATGTCTTGGTGATCAGCATGCTGCGATGTTGGGGC 985
Query 921 AAGCTTGCAGAAAAGGCGAGGCCAAGAGTACATATGGCACAGGCGCTTTCATTCTTCTCA 980
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 986 AAGCTTGCAGAAAAGGCGAGGCGAAGAGTACTTATGGCACAGGTGCTTTCATTCTTCTCA 1045
Query 981 ACACCGGAGAAGTGCCAATCAAATCAGGTCATGGACTTCTGACAACATTGGCCTACAAGC 1040
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1046 ACACCGGAGAAGTGCCAATCAAATCAGGTCATGGTCTTCTGACCACGTTGGCCTACAAGC 1105
Query 1041 TCGGGCCTCAAGCACATACCAACTATGCACTGGAGGGTTCGATTGCCATAGCAGGAGCTG 1100
|||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1106 TCGGTCCTCAAGCACAGACAAACTATGCATTGGAGGGTTCGATTGCCATAGCAGGAGCTG 1165
Query 1101 CTGTCCAGTGGCTTAGAGACAGCCTTGGGATAATCAAAAGCGCCTCTGAAATCGAAGATT 1160
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1166 CTGTTCAGTGGCTTAGAGACAGCCTTGGGATAATCAAAAGCGCCTCTGAGATCGAAGATT 1225
Query 1161 TGGCAGCAATGGTAGATTCTACAGGAGGAGTGTACTTTGTGCCAGCGTTCAACGGCTTTT 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1226 TGGCAGCAATGGTAGATTCTACAGGAGGAGTGTACTTTGTGCCAGCGTTCAACGGCTTGT 1285
Query 1221 TTGCTCCTTGGTGGAGAGAAGACGCACGCGGTGTGTGCATTGGAATCACGAGGTTCACCA 1280
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1286 TTGCTCCTTGGTGGAGAGAAGACGCACGTGGTGTGTGCATTGGAATCACGAGGTTCACCA 1345
Query 1281 ACAAGTCTCACATTGCTCGGGCAGTGCTGGAGAGCATGTGTTTCCAAGTGAAAGACGTCC 1340
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1346 ACAAGTCTCACATTGCTCGGGCTGTGCTGGAGAGCATGTGTTTCCAGGTGAAAGACGTCC 1405
Query 1341 TTGACTCCATGAACAAAGATGCAGGTGAAAAGGGTTCCCT-AGATAACGGGAAAGGGGAG 1399
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1406 TTGACTCCATGAACAAAGATGCAGGTGAAAAGGGTTCCCTTA-ATAACGGGAAAGGGGAG 1464
Query 1400 TTCTTGCTCAGAGTTGATGGTGGTGCCACAGCTAACAACCTTCTGATGCAGATTCAGGCT 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TTCTTGCTCAGAGTTGATGGTGGTGCCACAGCTAACAACCTTCTGATGCAGATTCAGGCT 1524
Query 1460 GATCTGATGGGGAGTCCAGTGGTGAGGCCTGTGGACATAGAGACAACAGCACTAGGAGCA 1519
||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1525 GATCTGATGGGAAGTCCGGTGGTGAGGCCAGTGGACATAGAGACAACAGCATTAGGAGCA 1584
Query 1520 GCCTATGCAGCTGGGTTGGCTGTGGGATTCTGGAATGAAGCAGACATATTCGAGTCAGGA 1579
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1585 GCCTATGCAGCTGGATTAGCTGTGGGATTCTGGAAGGAAGCAGACATATTCGAGTCGGGA 1644
Query 1580 GAGAAGGCGAAGAACTCCAAAGTTTTCAGACCTGCTATGGAAGAAGAAACCAGGAAGAAG 1639
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 1645 GAGAAGGCGAAGAACTCCAAAGTTTTCAGACCCGCTATGGAAGAAGGAATCAGGAAGAAG 1704
Query 1640 AAAGTGGCGTCTTGGTGCAAAGCGGTGGAAAGAACATTTGATCTCGCTGATCTCTCTATG 1699
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1705 AAAGTGGCGTCTTGGTGCAAAGCGGTGGAAAGAACATTTGATCTCGCTGACCTCTCTATC 1764
Query 1700 TAAAACTTGAATCA-TCTCATCTCTGAGAT-TACTTCTT-ATTTACCACAGTTGGGCTCT 1756
||||||||||| | | | ||||| ||||| | || ||| ||||||||||||||||||||
Sbjct 1765 TAAAACTTGAAGAAGT-TGATCTCAGAGATGTCCT-CTTTATTTACCACAGTTGGGCTCT 1822
Query 1757 GTCTTCCAAGTCACATTATGTTT-AACGTCTAATATATGTT-GAGTAAACCGTCTTTGAA 1814
|||||||||||||||| |||||| || |||||||||||||| || |||||||||||||||
Sbjct 1823 GTCTTCCAAGTCACATAATGTTTTAAGGTCTAATATATGTTTGATTAAACCGTCTTTGAA 1882
Query 1815 TGATTTATATATCAATGCTTAATTCTGTTGGAAGTAAGATTGCATTTGCATCATAATAAG 1874
||||||||| ||||||||||||||||||||||||||||||||||| ||| | | ||||
Sbjct 1883 TGATTTATACATCAATGCTTAATTCTGTTGGAAGTAAGATTGCAT---CAT-A-A-TAAG 1936
Query 1875 ACATGAGAGA 1884
||||||||||
Sbjct 1937 ACATGAGAGA 1946
Score = 111 bits (60), Expect = 2e-23
Identities = 81/90 (90%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 1 AATGCGTAGATGGATAAAAAACGGTGAAGTTTCCAACAAAATCTCTGA-T-T----CAGC 54
|||||||||||||||| | ||||||||||||||||||||||||||||| | | ||||
Sbjct 1 AATGCGTAGATGGATAGAGAACGGTGAAGTTTCCAACAAAATCTCTGACTCTGATTCAGC 60
Query 55 TTTCTATAATCAATCGTTCCCATTATCTCA 84
|||||||| |||||||||||||||||||||
Sbjct 61 TTTCTATATTCAATCGTTCCCATTATCTCA 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93272612610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5