BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477207
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80450.1 | Symbols: | VQ motif-containing protein | chr1:30... 1123 0.0
> AT1G80450.1 | Symbols: | VQ motif-containing protein | chr1:30243930-30244783
REVERSE LENGTH=854
Length=854
Score = 1123 bits (608), Expect = 0.0
Identities = 781/856 (91%), Gaps = 46/856 (5%)
Strand=Plus/Plus
Query 1 TGTGCAGTAGGCAGACGAATGTCTTTTAGACaaaaacaaaaa-aa-C-AAT-TT-TCTCT 55
|||||||||||||||||||||||||||||||||||||||||| || | | || |||||
Sbjct 5 TGTGCAGTAGGCAGACGAATGTCTTTTAGACAAAAACAAAAACAAGCTTCTCTTCTCTCT 64
Query 56 TCTCTTCATCTCTTTAGTCATCATCTTAACCACCATGAGCCACCAGCACCAGCAGCCGCC 115
||||||| |||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 65 TCTCTTCTTCTCTTTAGTCATC-TC--AACCACCATGAG------TCACCAGCAGCCGCC 115
Query 116 GAGCTATGCCACCGACCCAAACACCATGTTCGTTCAAGCAGACCCTTCTAATTTCCGTAA 175
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 116 GAGCTATGCCACCGAGCCAAACACCATGTTCGTTCAAGCAGACCCCTCTAATTTCCGTAA 175
Query 176 CATCGTCCAAAAGCTCACCGGAGCACCACCCGATATctcctcctcctcctcctTCTCCAC 235
|||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||| |
Sbjct 176 CATCGTCCAAAAGCTCACTGGAGCACCACCCGATA--T-CTCCTCCTCATCCTTCTCCGC 232
Query 236 CGTCTCCGCCGCACACCAGAAGCTTCCACTAACTCCCAAAAAGCCAGCGTTCAAGCTCCA 295
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 233 CGTCTCAGCCGCACACCAGAAGCTTCCATTAACTCCCAAAAAGCCAGCGTTCAAACTCCA 292
Query 296 CGAACGGCGTCAATCATCAAAGAAAATGGAGCTGAAGGTCAACAACATCACAAACCCCAA 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 293 CGAACGGCGTCAATCATCAAAGAAAATGGAGCTTAAGGTCAACAACATCACAAACCCTAA 352
Query 356 CGACGCTTTCAGCCATTTCCACCGAGGATTCCTCGTCTCTCCCGTCTCTCACCTAGACCC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CGACGCTTTCAGCCATTTCCACCGAGGATTCCTCGTCTCTCCCGTCTCTCACCTAGACCC 412
Query 416 ATTCTGGGCGCGCGTGAGTCCACATTCAGCGCGTGAGGAACACCACGCGCAACCGGACAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATTCTGGGCGCGCGTGAGTCCACATTCAGCGCGTGAGGAACACCACGCGCAACCGGACAA 472
Query 476 GGAAGAGCAAAAAGCCATAGCGGATAAAGGGTTCTACTTCCTTCCGAGTCCGAGAAGCGG 535
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 GGAAGAGCAAAAAGCCATAGCGGAAAAAGGGTTCTACTTCCTTCCGAGTCCGAGAAGCGG 532
Query 536 CGCTGAGCCAGCACCGGAGCTTTTGCCACTGTTTCCTCTTCGTTCTCCTAACGGCACTAC 595
| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 533 CTCCGAGCCGGCACCGGAGCTTTTGCCCCTGTTTCCTCTTCGTTCTCCTAACGGCACTAA 592
Query 596 TCACCGGATTCATGAAGATAATTATGGCGACTCTT-GA-T-AATTT-GA--GT-TCA--- 645
|||||||||||||||||||||| || | ||||||| | | ||||| || || | |
Sbjct 593 TCACCGGATTCATGAAGATAATCATCGAGACTCTTAGTCTTAATTTAGAACGTATAATTT 652
Query 646 -A-TT--AGGCTATTTTAATCGTAAGTTGGGGTGACACGTGATATTTGCTGTTGCTTTTT 701
| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 653 GAGTTTTAGGCTATTT-AATCGTAAGTTGGGG--ACACGTGATATTTGCTGTTGCTTTTT 709
Query 702 ACTATTTTTGTTAGGGCTATAGTTAATATCCGTTTTCCATTTAACCTAGACTCCTTTTTC 761
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 710 ACTATTTTTGTTAGGGCTA--GTTAATATCCGTTTTCCATTTAACCTAGACT--TTTTTC 765
Query 762 TTCTATTATCCTTCATTAAACGTTTT-TTGAAGGGTCAACTATTTCGGCGCGTGTAGTCC 820
|| |||||||||||| |||| || |||||||||||||||||||||||||| |||
Sbjct 766 ----AT---CCTTCATTAAACTTTTTCTTCAAGGGTCAACTATTTCGGCGCGTGTACTCC 818
Query 821 ACTTCCTTTTAGAATA 836
|||||||||| |||||
Sbjct 819 ACTTCCTTTTGGAATA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5