BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477212
Length=3262
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80410.2 | Symbols: EMB2753 | tetratricopeptide repeat (TPR)... 4601 0.0
> AT1G80410.2 | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing
protein | chr1:30227485-30234985 REVERSE LENGTH=3183
Length=3183
Score = 4601 bits (2491), Expect = 0.0
Identities = 2646/2722 (97%), Gaps = 5/2722 (0%)
Strand=Plus/Plus
Query 76 TCTTCTTCTTCGCGAGCTCTCTTAGTAGCGCAAGAAAAATGGGGGCTTCGCTTCCTCCTA 135
||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 117 TCTTCGTCTTCGCGAGCTCTCTCAGTAGCGCAA-TAAAATGGGGGCTTCGCTTCCTCCTA 175
Query 136 AGGAGGCCAACCTCTTCAAGCTCATCGTCAAATCATATGAGACTAAGCAGTACAAGAAGG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AGGAGGCCAACCTCTTCAAGCTCATCGTCAAATCATATGAGACTAAGCAGTACAAGAAGG 235
Query 196 GACTCAAGGCAGCTGATGCCATATTAAAAAAGTTTCCTGATCATGGAGAGACTTTATCTA 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 236 GACTCAAGGCAGCTGATGCCATATTAAAAAAGTTTCCTGATCATGGAGAGACTTTATCGA 295
Query 256 TGAAAGGACTGACTCTAAACTGTATGGACCGCAAAACTGAAGCTTATGAGCTTGTTAGGC 315
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 296 TGAAAGGACTGACTCTAAACTGTATGGACCGCAAAACTGAAGCATATGAGCTTGTTCGAC 355
Query 316 TTGGAGTGAAGAATGATATCAAAAGCCATGTTTGCTGGCATGTGCTTGGTCTTTTGTACC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTGGAGTGAAGAATGATATCAAAAGCCATGTTTGCTGGCATGTGCTTGGTCTTTTGTACC 415
Query 376 GGTCAGACAGAGAGTATAGAGAAGCCATCAAATGCTACCGAAATGCTCTTAGAATAGATC 435
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 GGTCAGACAGAGAGTATAGAGAAGCAATCAAATGCTACCGAAATGCTCTTAGAATAGATC 475
Query 436 CTGATAACCTTGAAATACTCAGAGACCTCTCACTTCTGCAGGCACAAATGCGGGACTTAT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTGATAACCTTGAAATACTCAGAGACCTCTCACTTCTGCAGGCACAAATGCGGGACTTAT 535
Query 496 CCGGTTTTGTGGAGACCAGGCAGCAGCTTTTGACATTAAAGCCTAATCACCGAATGAACT 555
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 CCGGTTTTGTGGAGACCAGGCAGCAGCTTTTGACATTGAAGCCTAATCACCGAATGAACT 595
Query 556 GGATTGGCTTTGCAGTCTCTCAGCATTTAAACGCAAATGCTTCTAAAGCTGTTGAAATTT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGATTGGCTTTGCAGTCTCTCAGCATTTAAACGCAAATGCTTCTAAAGCTGTTGAAATTT 655
Query 616 TGGAAGCGTATGAAGGCACTTTAGAGGATGACTATCCTCCTGAGAACGAGCT-ATGTGAA 674
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 656 TGGAAGCGTATGAAGGCACCTTAGAGGATGACTATCCTCCTGAGAACGAGCTAAT-TGAA 714
Query 675 CACACTGAAATGATTCTATACAAGGTTTCCTTGCTTGAGGAGAGTGGTTCTTTTGACAAA 734
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CACACAGAAATGATTCTATACAAGGTTTCCTTGCTTGAGGAGAGTGGTTCTTTTGACAAA 774
Query 735 GCTCTTGAGGAGTTGCACAAAAAAGAACCGAAAATAGTTGATAAGTTGTCTTACAAAGAA 794
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 GCTCTTGAGGAGTTGCACAAAAAAGAGCCGAAAATAGTTGATAAGTTGTCTTACAAAGAA 834
Query 795 CAAGAGGTATCTCTCTTGTCAAAGGTTGGTCGTCTAGAAGAAGCCAATAAACTCTACAGG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAAGAGGTATCTCTCTTGTCAAAGGTTGGTCGTCTAGAAGAAGCCAATAAACTCTACAGG 894
Query 855 GTTTTACTTTCCATGAACCCTGACAATTACAGATATTATGAAGGCCTTCAAAAATGCCTT 914
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 895 GTTTTACTTTCCATGAACCCTGACAATTACAGATATCATGAGGGCCTCCAAAAATGCCTT 954
Query 915 GGTTTGTATTCAGAAAGTGGTCAATATTCGTCCGACCAGATTGAGAAGTTAAATGCTTTG 974
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 955 GGATTGTATTCAGAAAGTGGTCAATATTCGTCCGACCAGATTGAAAAGTTAAATGCTTTG 1014
Query 975 TACCAGTCTCTAAGTGAGCAGTACACTAGGTCATCCGCTGTTAAGAGGATACCATTGGAT 1034
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1015 TACCAGTCTCTAAGTGAGCAGTACACTCGGTCATCCGCTGTTAAGAGGATACCATTGGAT 1074
Query 1035 TTTCTGCAAGATGAGAACTTTAAGGAGGCTGTAGCAAAATACATTAAACCTCTGTTGACA 1094
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1075 TTTCTGCAAGATGAGAACTTTAAGGAGGCTGTAGCAAAGTACATTAAACCTCTTTTGACA 1134
Query 1095 AAGGGTGTTCCTTCATTATTTTCTGATCTCTCTTCTTTGTATGATCACCCTCGCAAGCCT 1154
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1135 AAGGGTGTTCCTTCATTATTTTCTGATCTCTCTTCTCTGTATGATCACCCTCGCAAGCCT 1194
Query 1155 GATATATTGGAGCAACTAGTTGTCGAGATGGAACATTCGATTAGGACTACCGGAAGTTTC 1214
||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||
Sbjct 1195 GATATATTGGAGCAACTAGTTGTTGAGATGAAACATTCGATTGGGACTACAGGAAGTTTC 1254
Query 1215 CCAGGAAGTGATGTAAAAGAGCCCCCTTCCACACTCTTGTGGACAttttttttCTTGGCT 1274
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1255 CCAGGAAGTGATGTAAAAGAGCCCCCTTCTACACTATTGTGGACATTGTTTTTCTTGGCT 1314
Query 1275 CAGCATTATGACAGGCGGGGTCAATATGATGTTGCGCTCTGTAAAATTGATGAGGCCATT 1334
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CAGCATTATGACAGGCGTGGTCAATATGATGTTGCGCTCTGTAAAATTGATGAGGCCATT 1374
Query 1335 GCTCATACGCCAACAGTGATTGATCTGTACTCCGTTAAGAGCCGAATAATGAAGCATGCA 1394
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1375 GCTCATACGCCAACAGTGATTGATCTGTACTCCGTCAAGAGCCGAATAATGAAGCATGCA 1434
Query 1395 GGAGACTTGACTGCCGCTGCTGCACTTGCCGATGAAGCTAGAGGCATGGACCTAGCAGAT 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GGAGACTTGACTGCCGCTGCTGCACTTGCCGATGAAGCTAGAGGCATGGACCTAGCAGAT 1494
Query 1455 CGTTATATAAACAGTGAATGCGTTAAGCGTATGTTGCAAGCAGATCAGGTGCCCTTGGCT 1514
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1495 CGTTATATAAACAGTGAATGCGTTAAGCGTATGTTACAAGCAGATCAGGTGCCCTTGGCT 1554
Query 1515 GAGAAAACTGCTGTTTTATTTACCAAAGAGGGGGATCAGCTCAACAATCTTCATGACATG 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGAAAACTGCTGTTTTATTTACCAAAGAGGGGGATCAGCTCAACAATCTTCATGACATG 1614
Query 1575 CAGTGCATGTGGTATGATCTTGCATCTGGAGATAGCTACTTCCGTCAGGGTGATCTTGGA 1634
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1615 CAGTGCATGTGGTATGATCTTGCATCTGGAGATAGCTATTTCCGTCAGGGTGATCTTGGA 1674
Query 1635 CGTGCTTTGAAAAAGTTCTTAGCTGTGGAGAAGCACTATGCTGACATTTCTGAAGATCAA 1694
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CGTGCTTTGAAGAAGTTTTTGGCTGTGGAGAAGCACTATGCTGACATTTCTGAAGATCAA 1734
Query 1695 TTTGATTTCCACTCGTATTGCCTAAGGAAAATGACTTTGCGTTCATATGTTGACATGCTT 1754
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1735 TTTGATTTCCACTCGTATTGTTTAAGGAAAATGACTTTGCGTTCATATGTTGATATGCTT 1794
Query 1755 AAGTTCCAAGACCGATTGCACTCGTTCCCATATTTCCACAAAGCAGCAATCAGAGCTATC 1814
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1795 AAGTTCCAAGACCGATTGCACTCATTCCCATATTTCCACAAAGCAGCAATCAGAGCTATC 1854
Query 1815 AGGTGCTACCTGAAATTGCATGACTCTCCCAAGTCGACTGCTGAAGAAGATGAAATGTCA 1874
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1855 AGGTGCTACCTGAAATTGCATGACTCTCCCAAGTCAACTGCTGGAGAAGATGAAATGTCA 1914
Query 1875 AAGTTGGCTCCTGCTCagaagaagaaaatcaagaagcagaaaaaggcagaagcccgagct 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 AAGTTGGCTCCTGCTCAGAAGAAGAAAATCAAGAAGCAGAAAAAGGCAGAAGCCCGAGCT 1974
Query 1935 aagaaagaagctgagagtaagagTGAAGAATCAACTGCCAGTGGTGCCTCTAAGTCTGGC 1994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAGAAAGAAGCTGAGAGTAAGAGTGAAGAATCAACTGCCAGTGGTGCCTCTAAGTCTGGC 2034
Query 1995 AAACGAAATGTGAAACCTGTAGATCCAGATCCTCATGGGCAAAAGTTAATTCAGGTTGAG 2054
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2035 AAACGAAATGTGAAACCTGTAGACCCAGATCCTCATGGGCAAAAGTTAATTCAGGTTGAG 2094
Query 2055 CAGCCAATGGCAGAGGCTTCAAAGTACTTGAGACTACTCCAGAAGCATTCGCCTAATTCT 2114
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2095 GAGCCAATGGCAGAGGCTTCAAAGTACTTGAGACTACTCCAGAAACATTCACCTAATTCT 2154
Query 2115 TTGGAGACTCATCTACTTTCCTTTGAGGTCAATATGAGAAAACAGAAGTTTCTACTTGCA 2174
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2155 TTGGAGACTCATTTACTTTCCTTTGAGGTCAATATGAGAAAACAGAAGTTTCTGCTTGCA 2214
Query 2175 TTCCAGGCCGTCAAGCAATTGATTAAATTGGATGCAGAGAACCCTGATTCACATCGTTCC 2234
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2215 TTCCAGGCTGTCAAGCAATTGCTTAAATTGGGTGCAGAGAACCCTGATTCACATCGTTCC 2274
Query 2235 TTGGTTAAATTCTTTCTCATGGCAGAATCGATAAGTGCTCCAACGACTGAAGCTGAGAAA 2294
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2275 TTGGTTAAATTCTTTCTCATGACAGAATCGATAAGTGCTCCAACGACTGAAGCTGAGAAA 2334
Query 2295 CTTCGTTGGAGTGTTCTAGAGGCTGAGCGCCCATCAATCAGTCAATTGCAGAATAAATCA 2354
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 CTTCGTTGGAGGGTCCTAGAGGCTGAGCGCCCATCAATCAGTCAATTGCAGAATAAATCA 2394
Query 2355 CTAATGGAAGCAAACAAAGAGTTTCTTGGTAGACACGAAGATTCTTTGGTGCACAGAGCT 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2395 CTAATGGAAGCAAACAAAGAGTTTCTTGGTAGACACGAAGATTCTTTGGTGCACAGAGCT 2454
Query 2415 GCATATGCTGAAATGCTGTATATTTTAGATCCAAGCAAGAAAGCCGAGGCAATCAAAATA 2474
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2455 GCATATGCAGAAATGCTGTATATTTTAGATCCAAGCAAGAAAACCGAGGCAATCAAAATA 2514
Query 2475 ATTGAAGACTCAACCAATAAAGTGGTTCAAACAAATGGAGCTCTAGGACCAGCAAGAGAA 2534
||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||
Sbjct 2515 ATTGAAGACTCAACCAATAAAGTAGTGCAAACAAATGAAGCTCTAGGACAAGCAAGAGAA 2574
Query 2535 TGGAAACTAAAAGACTGTATAGCAGTTCATAAGCTCCTAGACACAGTTCTCCTTGACTCA 2594
||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||
Sbjct 2575 TGGAAACTAAAAGACTGTATAGCTGTTCATACGCTCCTAGACACAGTTCTTCTCGACTCA 2634
Query 2595 GATGCTGCCTCCAGATGGAAATCACGCTGCGCCGAGTATTTTCCCTGTTCAACTCACTTT 2654
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635 CAAGCTGCCTCCAGATGGAAATCACGCTGCGCCGAGTATTTTCCCTGTTCAACTCACTTT 2694
Query 2655 GAAGGCAAGCACAGCTCTGTGATACCTGATTCAGTGTACAACTCA-CCTCGCAAGAGCAA 2713
||||||||||| ||||| |||| ||||||||||||||||||||| || |||||||||||
Sbjct 2695 GAAGGCAAGCATTGCTCTTTGATGCCTGATTCAGTGTACAACTCATCC-CGCAAGAGCAA 2753
Query 2714 TGAGAACGGTGACACGCCAAACCATCTAGTGGGTCAGACTGAATTGAGCGACGGACAACT 2773
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2754 TGAGAACGGTGACACGCCAAACCATCCAATGGGTCAGACTGAATTGAGCGACGGACAACT 2813
Query 2774 CGAAGCATTCAAGAGCCTCTCA 2795
||||||||||||||||||||||
Sbjct 2814 CGAAGCATTCAAGAGCCTCTCA 2835
Score = 379 bits (205), Expect = 8e-104
Identities = 298/338 (88%), Gaps = 26/338 (8%)
Strand=Plus/Plus
Query 2933 TCAGAAAATG-TTTGGAGTTGTAACATGCCAAATGTGTATAATTGTTTTTCTATATAAGG 2991
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2833 TCA-AAAATGTTTTGGAGTTGTAACATGCCAAATGTGTATAATTGTTTTTCTATATAAGG 2891
Query 2992 CTGGGTTTCAAGTTTGAAGAACATTGCCACAAAAAGAGAGAGGG-TCTGTGTCttttttt 3050
||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||
Sbjct 2892 CTGGGTTTCAAGTTTGAAGAACAATGCCACAAAAAAAGAGAGGGGTCT-TGTCTTTTTTT 2950
Query 3051 tctt-tt-ttctttttcgttttgttctctccacgcatttaa-gaggattttccgagcttt 3107
| || || || |||||||||||||||||||||| | ||||| |||||||| | ||
Sbjct 2951 TTTTCTTGTTTTTTTTCGTTTTGTTCTCTCCACAC-TTTAAAGAGGATTT-CT---CT-- 3003
Query 3108 tttGATGTTGTACCCTTTTATCTTCTTCTTTTATCAGTTTCCCCACATTATTTATTTT-T 3166
|||||||||||||||||||| |||||||| || ||||| |||||||||||||||| |
Sbjct 3004 ---GATGTTGTACCCTTTTATCTCCTTCTTTTTTCGGTTTCTCCACATTATTTATTTTCT 3060
Query 3167 CCCATTACATTATCTGTTTAAGCTTCTTGACATCTCTGGAAAATTTTTGTTTTGATGAGC 3226
|| |||||| || |||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 3061 CC-ATTACA--AT--GTTTAAGCTTCTTGACATCTCTGGAAAATTTT-GATTTGACGAGC 3114
Query 3227 CTGCCTTTGAGTG-GT-GTTACATCTTTTTCTTATATA 3262
|| |||||||||| | |||||||||||||||||||||
Sbjct 3115 CTACCTTTGAGTGAGACGTTACATCTTTTTCTTATATA 3152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162290060605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5