BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477214
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80390.1 | Symbols: IAA15 | indole-3-acetic acid inducible 1... 798 0.0
> AT1G80390.1 | Symbols: IAA15 | indole-3-acetic acid inducible
15 | chr1:30221780-30222702 REVERSE LENGTH=540
Length=540
Score = 798 bits (432), Expect = 0.0
Identities = 506/542 (93%), Gaps = 4/542 (1%)
Strand=Plus/Plus
Query 1 ATGTCATCGGAGGAATACGTTAGGGTTTGGCCCGATTCCGGTGATCTTGGAGGAATTGAG 60
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1 ATGTCACCGGAGGAATACGTTAGGGTTTGGCCGGATTCCGGTGATCTTGGAGGAACTGAG 60
Query 61 CTGACCCTAGCTTTGCCTGGCACTCCGACAAATGCATCGGACGGTCCAAAAAAGTGCCGA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 61 CTGACCCTAGCTTTGCCTGGCACTCCGACAAATGCATCGGAAGGTCCAAAAAAGTTCGGG 120
Query 121 AACAAACGTAGATTCCTCGAGACCGTTGATTTAAAACTCGGGGAAGGACACGAGAATAAG 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 121 AACAAACGTAGATTCCTCGAGACCGTTGATTTAAAACTCGGGGAAGCACACGAGAACAAT 180
Query 181 TATTTCTCAAGCCTGATCACTAATGACCAGTTGGTTGGG-TGGCCGCCGGTAACGACGGC 239
||| |||||||| || ||||||||||||||||||| ||| |||||||||||| |||| ||
Sbjct 181 TATATCTCAAGCATGGTCACTAATGACCAGTTGGT-GGGCTGGCCGCCGGTAGCGACAGC 239
Query 240 GAGGAAAACAGTGAGGCGGAAATACGTGAAAGTGGCGGTGGATGGTGCGGCGTATCTCAG 299
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 240 GAGGAAAACAGTGAGGCGGAAATACGTGAAAGTGGCGTTGGATGGTGCGGCCTATCTCAG 299
Query 300 GAAAG-TCGATCTTGAGATGTACGATTGCTACGGGCAACTTTTCACCGCTCTAGAAAACA 358
|||| | ||||||| ||||||||||||||| || || ||||||||||||||||||||||
Sbjct 300 -AAAGGTTGATCTTGGGATGTACGATTGCTATGGACAGCTTTTCACCGCTCTAGAAAACA 358
Query 359 TGTTTCAGGGTATAATAACAATATGTAAAGTGACGGAGTTGGAGAGGAAGGGAGAGTTTG 418
|||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 359 TGTTTCAGGGGATAATAACAATATGTAGAGTGACAGAGTTGGAGAGGAAGGGAGAGTTTG 418
Query 419 TGGCTACTTACGAGGATAAGGACGGTGACTGGATGTTAGTCGGAGATGTCCCGTGGATGA 478
| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 419 TTGCTACTTACGAGGATAAGGACGGTGACTTGATGTTAGTCGGAGATGTGCCGTGGATGA 478
Query 479 TGTTTGTGGAATCGTGCAAACGTATGAGGTTGATGAAAATAGGAGATGCTATTGGATTAT 538
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 479 TGTTTGTGGAATCTTGCAAACGTATGAGGTTAATGAAAACCGGAGATGCTATTGGATTAT 538
Query 539 AG 540
||
Sbjct 539 AG 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25870585705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5